mRNA_C-linearis_contig107.1030.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig107.1030.1
Unique NamemRNA_C-linearis_contig107.1030.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig107.1030.1 vs. uniprot
Match: D8LPN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN8_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 1.620e-73
Identity = 123/190 (64.74%), Postives = 142/190 (74.74%), Query Frame = 2 
Query:  131 VMYAP-GAKYTVVDVAGGDRCCGLLPPIALNLFAAGIPVEDIVSAVKDNITDDMKKLMQTLRGKVVEMSRGRFTFLDDMPEYEQTLDGEELADFADVVGNPNYVILTRGMWERVMLFLTGMFDGKAVMLMGEVLHLDGLRIVKHENGILAPCDSGGPLPREHCPMILHDR-GHFVALVPFREASDSDASG 694
            VM  P G KY VVDVAG DRCC +L PIALN+F   IP+EDIVS+V  N+TDDM K + TLRGKVVEMSR  F+F D          GEELADF DVV NP +VI+ RGMWE+VML   G FDG+A +LMG+VL LDG+RIVKH+NGILAPCD G PLP  HCPM+LHD  GHF AL+ FRE S+S+ASG
Sbjct:    4 VMSTPEGVKYRVVDVAGRDRCCEILAPIALNMFRENIPLEDIVSSVSGNLTDDMMKYVPTLRGKVVEMSRVFFSFAD----------GEELADFDDVVDNPMWVIMARGMWEKVMLCFRGQFDGRAFLLMGKVLPLDGIRIVKHDNGILAPCDVGVPLPSGHCPMVLHDGYGHFKALLHFRETSESEASG 183
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BLAST of mRNA_C-linearis_contig107.1030.1 vs. uniprot
Match: D8LK60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK60_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 4.450e-40
Identity = 94/192 (48.96%), Postives = 119/192 (61.98%), Query Frame = 2 
Query:  107 PAP---RENFDVMYAP-GAKYTVVDVAGGDRCCGLLPPIALNLFAAGIPVEDIVSAVKDNITDDMKKLMQTLRGKVVEMSRGRFTFLDDMPEYEQTLDGEELADFADVVGNPNYVILTRGMWERVMLFLTGMFDGKAVMLMGEVLHLDGLRIVKHENGILAPCDSGGPLPREHCPMILHDR-GHFVALVPFR 667
            PAP   R+N  V +   GA+Y  +DV GG  C  LL  IA+ + AAG P E+I +AV   +TDDMK+ +Q+LR   V     +F F D          GEELA F D+V +P +VI+TR MWE V L  TG  DG+AV L+ + L L G RIVKHE+G L PCD+GGP+  E CPM+LHD  GHF AL+P R
Sbjct:   18 PAPPKLRDNSRVYFTTEGAQYMALDVGGGGLCA-LLGVIAVAMDAAGTPCEEIFAAVSGKLTDDMKEYVQSLRA--VSTCGDQFAFKD----------GEELASFDDIVHDPMWVIVTRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMMLHDGYGHFKALIPLR 196
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BLAST of mRNA_C-linearis_contig107.1030.1 vs. uniprot
Match: D8LH64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH64_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 1.200e-33
Identity = 74/148 (50.00%), Postives = 93/148 (62.84%), Query Frame = 2 
Query:  227 AAGIPVEDIVSAVKDNITDDMKKLMQTLRGKVVEMSRGRFTFLDDMPEYEQTLDGEELADFADVVGNPNYVILTRGMWERVMLFLTGMFDGKAVMLMGEVLHLDGLRIVKHENGILAPCDSGGPLPREHCPMILHDR-GHFVALVPFR 667
            AAG P E+I   V   +TDDMK+ +Q+LR  +V      F F D          GEELA F D+V +P +VI+TR MWE V L  TG  DG+AV L+ + L L G RIVKHE+G L PCD+GGP+  + CPM+LHD  GHF AL+P R
Sbjct:    3 AAGTPCEEIFVGVSGELTDDMKEYVQSLRANIVSTCGDHFAFKD----------GEELASFDDIVHDPMWVIVTRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSQECPMMLHDGYGHFKALIPLR 140
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LPN8_ECTSI1.620e-7364.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LK60_ECTSI4.450e-4048.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LH64_ECTSI1.200e-3350.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:175640..176897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1258
Cds size975
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1030.1prot_C-linearis_contig107.1030.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig107 175653..176627 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927406.5375059-UTR-C-linearis_contig107:175639..1756521622927406.5375059-UTR-C-linearis_contig107:175639..175652Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 175640..175652 +
1690879682.6038353-UTR-C-linearis_contig107:175639..1756521690879682.6038353-UTR-C-linearis_contig107:175639..175652Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 175640..175652 +
1622927406.5650072-UTR-C-linearis_contig107:176627..1768971622927406.5650072-UTR-C-linearis_contig107:176627..176897Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 176628..176897 +
1690879682.6228786-UTR-C-linearis_contig107:176627..1768971690879682.6228786-UTR-C-linearis_contig107:176627..176897Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 176628..176897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927406.5539088-CDS-C-linearis_contig107:175652..1766271622927406.5539088-CDS-C-linearis_contig107:175652..176627Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 175653..176627 +
1690879682.6133156-CDS-C-linearis_contig107:175652..1766271690879682.6133156-CDS-C-linearis_contig107:175652..176627Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 175653..176627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig107.1030.1

>prot_C-linearis_contig107.1030.1 ID=prot_C-linearis_contig107.1030.1|Name=mRNA_C-linearis_contig107.1030.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=325bp
MGRGRSNARRNNNKNKKNVTPTTPDTPDTPEPAPRENFDVMYAPGAKYTV
VDVAGGDRCCGLLPPIALNLFAAGIPVEDIVSAVKDNITDDMKKLMQTLR
GKVVEMSRGRFTFLDDMPEYEQTLDGEELADFADVVGNPNYVILTRGMWE
RVMLFLTGMFDGKAVMLMGEVLHLDGLRIVKHENGILAPCDSGGPLPREH
CPMILHDRGHFVALVPFREASDSDASGSTDVESEASDDTDGESGASGGTD
GDSGASDGESEASGGTDGDESSDTPMQGRRWDVDEFFGDDKTYLAETSVL
WDGGQSSTRNSRGHGLSQDQPRLR*
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mRNA from alignment at C-linearis_contig107:175640..176897+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig107.1030.1 ID=mRNA_C-linearis_contig107.1030.1|Name=mRNA_C-linearis_contig107.1030.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1258bp|location=Sequence derived from alignment at C-linearis_contig107:175640..176897+ (Chordaria linearis ClinC8C monoicous)
TGCCAGGTGAAACATGGGCAGGGGACGCAGCAACGCAAGGAGGAACAACA
ACAAAAACAAGAAAAATGTGACACCGACGACCCCGGACACCCCGGACACC
CCGGAACCGGCGCCCCGGGAGAACTTCGACGTCATGTACGCGCCCGGAGC
TAAGTACACGGTGGTGGACGTAGCCGGCGGAGACCGGTGCTGTGGACTTC
TCCCCCCCATCGCCCTCAATCTCTTCGCCGCGGGGATCCCCGTCGAGGAC
ATCGTCTCGGCCGTCAAGGACAACATAACGGACGACATGAAGAAACTCAT
GCAGACTCTCCGTGGCAAGGTCGTCGAAATGTCTCGCGGACGCTTCACTT
TCTTGGACGACATGCCGGAGTACGAGCAGACCCTGGACGGCGAAGAGTTG
GCTGACTTCGCCGACGTTGTTGGCAACCCGAACTACGTGATCCTGACGAG
GGGGATGTGGGAGAGAGTGATGCTGTTCCTAACCGGTATGTTCGACGGGA
AAGCCGTTATGCTCATGGGCGAAGTCCTTCACCTAGACGGGCTCAGGATC
GTCAAGCATGAAAACGGGATCTTGGCTCCGTGCGATTCTGGGGGTCCCCT
CCCCCGCGAACACTGTCCCATGATACTGCACGACCGAGGGCACTTCGTGG
CCCTGGTTCCCTTTCGCGAGGCTTCGGATTCGGACGCTTCGGGCAGCACC
GACGTGGAGTCGGAGGCGTCGGACGACACCGACGGGGAGTCGGGGGCTTC
GGGTGGCACCGACGGAGATTCGGGAGCTTCAGACGGGGAGTCGGAGGCTT
CGGGCGGCACCGACGGGGATGAGTCGAGTGACACGCCCATGCAAGGTCGC
CGCTGGGACGTCGACGAGTTCTTCGGTGACGACAAGACCTATCTGGCTGA
GACCAGTGTTTTGTGGGATGGTGGACAATCGTCGACACGAAATTCGCGAG
GACACGGTCTATCGCAAGACCAGCCACGTCTCAGGTGAGCCACTCGTAGC
TAGACTGTGCGTGAATAGTAAGCAATAAAACGCTTTCGCACGCATAAAGT
GGTGGACATGTGTTCAAAAACCCCGCCTGAAAGCCCCACCTGAAAGCCCC
GCCTGAAAACCCCACCTGAAATCCCGTGTAATCCAGGCCAGTCTGTGCGA
CTTTGCTATCCCGAACAAGTACGAGCCATTGTTCCTACCCGACGAGGAAG
AGGAGGCGGAGGAGTTGCACGAAAAAGAAGACGAATCGGTCCAAGAGGGT
AGTGATGC
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Coding sequence (CDS) from alignment at C-linearis_contig107:175640..176897+

>mRNA_C-linearis_contig107.1030.1 ID=mRNA_C-linearis_contig107.1030.1|Name=mRNA_C-linearis_contig107.1030.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at C-linearis_contig107:175640..176897+ (Chordaria linearis ClinC8C monoicous)
ATGGGCAGGGGACGCAGCAACGCAAGGAGGAACAACAACAAAAACAAGAA
AAATGTGACACCGACGACCCCGGACACCCCGGACACCCCGGAACCGGCGC
CCCGGGAGAACTTCGACGTCATGTACGCGCCCGGAGCTAAGTACACGGTG
GTGGACGTAGCCGGCGGAGACCGGTGCTGTGGACTTCTCCCCCCCATCGC
CCTCAATCTCTTCGCCGCGGGGATCCCCGTCGAGGACATCGTCTCGGCCG
TCAAGGACAACATAACGGACGACATGAAGAAACTCATGCAGACTCTCCGT
GGCAAGGTCGTCGAAATGTCTCGCGGACGCTTCACTTTCTTGGACGACAT
GCCGGAGTACGAGCAGACCCTGGACGGCGAAGAGTTGGCTGACTTCGCCG
ACGTTGTTGGCAACCCGAACTACGTGATCCTGACGAGGGGGATGTGGGAG
AGAGTGATGCTGTTCCTAACCGGTATGTTCGACGGGAAAGCCGTTATGCT
CATGGGCGAAGTCCTTCACCTAGACGGGCTCAGGATCGTCAAGCATGAAA
ACGGGATCTTGGCTCCGTGCGATTCTGGGGGTCCCCTCCCCCGCGAACAC
TGTCCCATGATACTGCACGACCGAGGGCACTTCGTGGCCCTGGTTCCCTT
TCGCGAGGCTTCGGATTCGGACGCTTCGGGCAGCACCGACGTGGAGTCGG
AGGCGTCGGACGACACCGACGGGGAGTCGGGGGCTTCGGGTGGCACCGAC
GGAGATTCGGGAGCTTCAGACGGGGAGTCGGAGGCTTCGGGCGGCACCGA
CGGGGATGAGTCGAGTGACACGCCCATGCAAGGTCGCCGCTGGGACGTCG
ACGAGTTCTTCGGTGACGACAAGACCTATCTGGCTGAGACCAGTGTTTTG
TGGGATGGTGGACAATCGTCGACACGAAATTCGCGAGGACACGGTCTATC
GCAAGACCAGCCACGTCTCAGGTGAATGGGCAGGGGACGCAGCAACGCAA
GGAGGAACAACAACAAAAACAAGAAAAATGTGACACCGACGACCCCGGAC
ACCCCGGACACCCCGGAACCGGCGCCCCGGGAGAACTTCGACGTCATGTA
CGCGCCCGGAGCTAAGTACACGGTGGTGGACGTAGCCGGCGGAGACCGGT
GCTGTGGACTTCTCCCCCCCATCGCCCTCAATCTCTTCGCCGCGGGGATC
CCCGTCGAGGACATCGTCTCGGCCGTCAAGGACAACATAACGGACGACAT
GAAGAAACTCATGCAGACTCTCCGTGGCAAGGTCGTCGAAATGTCTCGCG
GACGCTTCACTTTCTTGGACGACATGCCGGAGTACGAGCAGACCCTGGAC
GGCGAAGAGTTGGCTGACTTCGCCGACGTTGTTGGCAACCCGAACTACGT
GATCCTGACGAGGGGGATGTGGGAGAGAGTGATGCTGTTCCTAACCGGTA
TGTTCGACGGGAAAGCCGTTATGCTCATGGGCGAAGTCCTTCACCTAGAC
GGGCTCAGGATCGTCAAGCATGAAAACGGGATCTTGGCTCCGTGCGATTC
TGGGGGTCCCCTCCCCCGCGAACACTGTCCCATGATACTGCACGACCGAG
GGCACTTCGTGGCCCTGGTTCCCTTTCGCGAGGCTTCGGATTCGGACGCT
TCGGGCAGCACCGACGTGGAGTCGGAGGCGTCGGACGACACCGACGGGGA
GTCGGGGGCTTCGGGTGGCACCGACGGAGATTCGGGAGCTTCAGACGGGG
AGTCGGAGGCTTCGGGCGGCACCGACGGGGATGAGTCGAGTGACACGCCC
ATGCAAGGTCGCCGCTGGGACGTCGACGAGTTCTTCGGTGACGACAAGAC
CTATCTGGCTGAGACCAGTGTTTTGTGGGATGGTGGACAATCGTCGACAC
GAAATTCGCGAGGACACGGTCTATCGCAAGACCAGCCACGTCTCAGGTGA
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