mRNA_C-linearis_contig107.1017.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig107.1017.1
Unique Name	mRNA_C-linearis_contig107.1017.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig107.1017.1 vs. uniprot
Match: D7FMZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMZ9_ECTSI)

HSP 1 Score: 337 bits (865), Expect = 9.550e-109
Identity = 171/202 (84.65%), Postives = 181/202 (89.60%), Query Frame = 1

Query:  331 MKQSKFAKRIFRIFDEDGSGSVDFREFVMSLWNYCTLSKAALIMFAFDLXXXXXXXXXXLTEVELLLKEVYGREFQSNTQAQTIMAKMRGGDLGMERNINVNQFREFCRTHPAVLYPAFVLQTQMQEKILGSKFWSSCSNARVKLSSGAYVDIAAILQAHVNEKAFQDLIDTKDVVTGKQVTPLANADNVAMLQMSGTLANR 936
            MKQSKF KRIFRIFDEDGSGSVDFREFVMSLWNYCTLSKAALIMFAFDL          + EVELLLKEVYGREFQSNT AQTIMAK+RG +LG+ RNINV+QFREFCRTHPAVLYPAFVLQTQMQEKILGSKFW +CSNARV LSSGAYVDIAAIL AHVNEKAF  L+D+KD VTGKQVTPLA++DNVAMLQMSGTLANR
Sbjct:    1 MKQSKFTKRIFRIFDEDGSGSVDFREFVMSLWNYCTLSKAALIMFAFDLYDNDNSGEIDIGEVELLLKEVYGREFQSNTHAQTIMAKLRGSELGLARNINVDQFREFCRTHPAVLYPAFVLQTQMQEKILGSKFWIACSNARVALSSGAYVDIAAILHAHVNEKAFAALVDSKDAVTGKQVTPLADSDNVAMLQMSGTLANR 202

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BLAST of mRNA_C-linearis_contig107.1017.1 vs. uniprot
Match: A0A7S3XL51_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL51_HETAK)

HSP 1 Score: 174 bits (442), Expect = 2.170e-46
Identity = 104/213 (48.83%), Postives = 139/213 (65.26%), Query Frame = 1

Query:  211 DFEALQLSEEQVRLMWDEYCKIDEDKSGEISLWELFGALDMKQSKFAKRIFRIFDEDGSGSVDFREFVMSLWNYCTLSKAALIMFAFDLXXXXXXXXXXLTEVELLLKEVYGREFQSNTQAQTIMAKMR--GGD----LGMER-NINVNQFREFCRTHPAVLYPAFVLQTQMQEKILGSKFWSSCSNARVKLSSGAYVDIAAILQAHVNEKAF 828
            +F++L L    V  +   Y  ID D SG I + EL   L +  S+F  R+FRIFDEDGSG +DFREFV+S+WNYCTL+K AL+MFAFDLXXXXXXXXXX  EVEL+LKEVYG  FQ++  AQ ++  MR   GD    L M+R  +   QF +FCR H  +L PAF +Q  ++E + G + W   S  R ++S GAY+ +  +L++H+N   F
Sbjct:   26 EFKSLGLHNRDVWALHSSYAAIDGDNSGTIEVKELMAYLGL-HSQFTNRVFRIFDEDGSGELDFREFVVSMWNYCTLAKNALVMFAFDLXXXXXXXXXXXXEVELMLKEVYGEGFQASQLAQKVLRHMRMIDGDARLPLSMQRCEVTAEQFGQFCRKHATLLLPAFTMQETLREAVGGKRLWERLSRRRFEVSDGAYISVNQLLESHLNLAQF 237

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BLAST of mRNA_C-linearis_contig107.1017.1 vs. uniprot
Match: A0A2R5GVS2_9STRA (Calcium-dependent protein kinase 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVS2_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.170e-43
Identity = 88/215 (40.93%), Postives = 130/215 (60.47%), Query Frame = 1

Query:  214 FEALQLSEEQVRLMWDEYCKIDEDKSGEISLWELFGALDMKQSKFAKRIFRIFDEDGSGSVDFREFVMSLWNYCTLSKAALIMFAFDLXXXXXXXXXXLTEVELLLKEVYGREFQSNTQAQTIMAKM-------RGGDLGMERNINVNQFREFCRTHPAVLYPAFVLQTQMQEKILGSKFWSSCSNARVKLSSGAYVDIAAILQAHVNEKAFQDL 837
            F  + L+E  V  ++  + KID+D SGE+SL+EL   L + ++ F KR+F IFDEDGSGS+DFREFV+S WNY TL+K+ LI+FAFDL          L E+  + K+VYG +F+ +  A  I+ K+       RG  +     I + +F  FC  HP +LYPAF  Q  +Q+ I+G  FW+  S  R+ + +G  V I  +L AH+++  F++L
Sbjct:   21 FRTIGLNERHVEKLYRGFSKIDKDGSGELSLFELLDHLKVSKTPFTKRVFSIFDEDGSGSIDFREFVLSTWNYATLTKSTLIIFAFDLYDGDESGSMELEEIMDMCKDVYGADFEKSRLAAQIIDKIHKLNDPTRGSGI-----ITLEKFAVFCEHHPGLLYPAFTFQQALQKAIIGVTFWTKLSKERLVMPNGVQVSIKDVLTAHIDKNKFKEL 230

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BLAST of mRNA_C-linearis_contig107.1017.1 vs. uniprot
Match: A0A482T6P1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T6P1_9ARCH)

HSP 1 Score: 166 bits (420), Expect = 1.630e-43
Identity = 80/196 (40.82%), Postives = 124/196 (63.27%), Query Frame = 1

Query:  214 FEALQLSEEQVRLMWDEYCKIDEDKSGEISLWELFGALDMKQSKFAKRIFRIFDEDGSGSVDFREFVMSLWNYCTLSKAALIMFAFDLXXXXXXXXXXLTEVELLLKEVYGREFQSNTQAQTIMAKMRGGDLGMERNINVNQFREFCRTHPAVLYPAFVLQTQMQEKILGSKFWSSCSNARVKLSSGAYVDIAAIL 801
            F+AL+L++ ++R   + Y  ID D SG I L EL   LD++ + F+ R F +FD + SG +DFREFV+SLWNYCTL  A L ++ FDL           +EV+ +LK++YG+ FQ+N +A  +M  M+  +L    + ++ +F +F R+H  +L+PAF +Q ++QEK+ G  FW  CSN R+++S G Y  I  I+
Sbjct:   20 FKALRLTDNEIRKFLNMYQAIDRDNSGAIDLQELLNYLDIENTSFSHRAFSVFDINNSGKIDFREFVLSLWNYCTLGNATLDVYTFDLYDKDKSGILSESEVQAMLKDLYGKTFQTNPRATAVMNAMKKSEL--RGDFDLPKFTKFVRSHQEMLFPAFQMQLKIQEKVFGRGFWERCSNRRIEISKGKYASITEIM 213

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BLAST of mRNA_C-linearis_contig107.1017.1 vs. uniprot
Match: A0A7S4A064_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A064_9STRA)

HSP 1 Score: 176 bits (445), Expect = 2.360e-43
Identity = 111/265 (41.89%), Postives = 157/265 (59.25%), Query Frame = 1

Query:  169 SIYDTSVWARKYRHDFEALQLSEEQVRLMWDEYCKIDEDKSGEISLWELFGALDMKQSKFAKRIFRIFDEDGSGSVDFREFVMSLWNYCTLSKAALIMFAFDLXXXXXXXXXXLTEVELLLKEVYGREFQSNTQAQTI------MAKMRGGDLGMERNINVNQFREFCRTHPAVLYPAFVLQTQMQEKILGSKFWSSCSNARVKLSSGAYVDIAAILQAHVNEKAFQDLIDTKDVVTGKQVTPLANA--DNVAMLQMSGTLANRR 939
            SIY  +   R  R  FE+L L E+ V  + +++  ID+D SG I LWEL   LD+++++FAKR+F IFD DGS  +DF+EFV++LW YCTL +  L+MF    XXXXXXXXXX      +LKE+YG+ +  NT A  +      M K R  D      ++V  F EFCRTHPA+L PAF +QT M+ +I+G  +W   SN RVK+     + I  +L+AH+ E AF   +   D    K +   A+   D  +  +++GT+A RR
Sbjct:  235 SIYSKNAAVRPLRSTFESLGLKEDDVARLHEQFVIIDKDGSGAIELWELLDYLDLQRNRFAKRVFAIFDADGSNQIDFKEFVVALWQYCTLGRPQLVMFXXXXXXXXXXXXXXXXXFNAMLKELYGKRYSKNTTAVNLLRHINAMTKRRDTD-----EVDVEAFAEFCRTHPAMLMPAFAMQTTMRARIMGGAWWDRRSNERVKVGRHT-MRIHDLLKAHLQEDAFHSFMRAVDSGDAKALKRDADKHRDWKSATEVTGTVAQRR 493

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BLAST of mRNA_C-linearis_contig107.1017.1 vs. uniprot
Match: A0A4Q3A667_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q3A667_9BACT)

HSP 1 Score: 167 bits (423), Expect = 9.760e-43
Identity = 83/208 (39.90%), Postives = 135/208 (64.90%), Query Frame = 1

Query:  211 DFEALQLSEEQVRLMWDEYCKIDEDKSGEISLWELFGALDMKQSKFAKRIFRIFDEDGSGSVDFREFVMSLWNYCTLSKAALIMFAFDLXXXXXXXXXXLTEVELLLKEVYGREF-QSNTQAQTIMAKMRGGDLGMERNINVNQFREFCRTHPAVLYPAFVLQTQMQEKILGSKFWSSCSNARVKLSSGAYVDIAAILQAHVNEKAFQ 831
            +F+AL+L   +VR ++  + ++D D SG + L EL   L+M ++ F  R+F IFDEDGSG +DFREFV+SLWNYCTLSKA L +FAFDL            E E LL+++YG  + Q N  A+ +  +++   +  E ++++++F+ F + HP++L+PAF LQ  ++ ++LGS FW   S  R++LS G +V I+ +++ +V+   +Q
Sbjct:   19 EFDALKLRPSEVRQLYRIFARVDVDHSGTVGLKELLNYLEMGEAVFKDRVFSIFDEDGSGQIDFREFVLSLWNYCTLSKATLDLFAFDLYDKNNDGELSAEEAEDLLRDLYGAHYAQHNPTARFVAFELK--KVCAESSLDIDRFQNFIQYHPSLLFPAFQLQHALRSRVLGSGFWERASERRIELSDGKFVPISRLMELNVSPALYQ 224

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BLAST of mRNA_C-linearis_contig107.1017.1 vs. uniprot
Match: A0A7S3HMR9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HMR9_9STRA)

HSP 1 Score: 171 bits (432), Expect = 4.750e-41
Identity = 97/213 (45.54%), Postives = 150/213 (70.42%), Query Frame = 1

Query:  196 RKYRHDFEALQLSEEQVRLMWDEYCKIDEDKSGEISLWELFGALDMKQSKFAKRIFRIFDEDGSGSVDFREFVMSLWNYCTLSKAALIMFAFDLXXXXXXXXXXLTEVELLLKEVYGR-EFQSNTQAQTIMAKMRGGDLGMERNINVNQFREFCRTHPAVLYPAFVLQTQMQEKILGSKFWSSCSNARVKLSSGAYVDIAAILQAHV--NEKA 825
            +++   F+A+QLS+ +VR ++  + ++D DKSG+I+L EL   +D+++++F +RIF IFD DGSG +DFREFV+SLWNYCTL+KA L MFAF  XXXXXXXXXX  EV  +L+++YG+ E +SN  A+T+   ++  D      +N+ ++R+F RTH A+L+PAF +Q  +Q K+LG +FW   +  R+K S+G Y+ +   +  +V  N+KA
Sbjct:   17 QEWMTQFQAMQLSKSEVRTLYYIFARVDFDKSGQIALAELLAHIDLERTRFTERIFSIFDADGSGEIDFREFVLSLWNYCTLTKATLDMFAFXXXXXXXXXXXXGKEVTQMLQDIYGKKEVKSNYLARTVANDLKAID-DSGTLLNIEEYRQFVRTHQALLFPAFQMQLALQRKVLGVRFWERNAERRLKFSNGKYISVGNFILMNVDANKKA 228

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BLAST of mRNA_C-linearis_contig107.1017.1 vs. uniprot
Match: A0A8J2SI54_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SI54_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.890e-39
Identity = 105/268 (39.18%), Postives = 160/268 (59.70%), Query Frame = 1

Query:  172 IYDTSVWARKY---RHDFEALQLSEEQVRLMWDEYCKIDEDKSGEISLWELFGALDMKQSKFAKRIFRIFDEDGSGSVDFREFVMSLWNYCTLSKAALIMFAFDLXXXXXXXXXXLTEVELLLKEVYGREFQSNTQAQTIMAKMRGGDLGMERN---INVNQFREFCRTHPAVLYPAFVLQTQMQEKILGSKFWSSCSNARVKLSSGAYVDIAAILQAHVNEKAFQDLIDTKDVVTGKQVTPLANA------DNVAMLQMSGTLANRR 939
            IY+   W +     R  FE+L L E+ V  + +++ KID+D SG I LWE+   LD+K+++FAKR+F IFD DGS  +DF+EFV++LW YCTL +A LIMFA   XXXXXXXXXX      +LKE+YGR +  N  A  ++  +   +L    +   ++V  F  F ++HPA+L PAF +Q  ++E+ILG  +W   S+ RVK++ G  + I  +++AH++E AF   +   +    K+    A A      D    ++++G +A RR
Sbjct:   26 IYNDKKWNKTIAPLRPTFESLGLKEDDVARLHEQFLKIDKDGSGTIELWEMLDHLDLKRNRFAKRVFAIFDVDGSNEIDFKEFVVALWQYCTLGRAQLIMFAXXXXXXXXXXXXXXXXXNTMLKELYGRRYAKNQIALNLLRHI--NELNKRHDTEEVDVETFAAFVKSHPALLQPAFSMQQTLRERILGGAWWDRRSHERVKVN-GMNLRIHDLMKAHLHEGAFHAFMKAVEKSDAKEYKKDAEAHRDFSVDWHKTVKVTGMVAQRR 290

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BLAST of mRNA_C-linearis_contig107.1017.1 vs. uniprot
Match: A0A7S3M126_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M126_9STRA)

HSP 1 Score: 162 bits (410), Expect = 5.340e-39
Identity = 86/256 (33.59%), Postives = 147/256 (57.42%), Query Frame = 1

Query:  169 SIYDTSVWARKYRHD---FEALQLSEEQVRLMWDEYCKIDEDKSGEISLWELFGALDMKQSKFAKRIFRIFDEDGSGSVDFREFVMSLWNYCTLSKAALIMFAFDLXXXXXXXXXXLTEVELLLKEVYGR-EFQSNTQAQTIMAKMRGGDLGMERNINVNQFREFCRTHPAVLYPAFVLQTQMQEKILGSKFWSSCSNARVKLSSGAYVDIAAILQAHVNEKAFQDLIDTKDVVTGKQ--VTPLANADNVAMLQMS 918
            S +D    + +++ D   + A+QLSE++VR +++E+ K+D D SG I L EL   LD+  + + +++F IFDED SG V+F+EFVM+LWNYCTL+ + L MFAFDL            EV  +L +++G+ E ++N  A+ + A++            ++ FR F +TH A+L+PAF +Q  +Q K LG+ FW   ++ R+++ +G Y+ + A +  H   ++ + +   K    G+     P+  A   A+ + S
Sbjct:    6 SAFDNEKHSPQFQKDLVQYRAMQLSEKEVRKLYNEFRKVDMDNSGSIGLPELLAHLDLPVTDYTQKVFSIFDEDRSGEVEFKEFVMTLWNYCTLTSSTLEMFAFDLYDSDGSGEISPNEVTQMLTDLFGKHEVKTNQHAKVMAAELLDHAKNFRDPFTIDTFRAFVKTHQALLFPAFQMQLALQRKFLGTAFWEKNADRRMEICNGKYISVGAFIAEHAQSQSVEAMQPLKFARIGEDPAAAPVVQAGGRAVRRKS 261

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BLAST of mRNA_C-linearis_contig107.1017.1 vs. uniprot
Match: A0A7S2F8V1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F8V1_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.390e-38
Identity = 83/149 (55.70%), Postives = 111/149 (74.50%), Query Frame = 1

Query:  271 KIDEDKSGEISLWELFGALDMKQSKFAKRIFRIFDEDGSGSVDFREFVMSLWNYCTLSKAALIMFAFDLXXXXXXXXXXLTEVELLLKEVYGREFQSNTQAQTIMAKMRG-GDLGMERNINVNQFREFCRTHPAVLYPAFVLQTQMQEK 714
            KID+D SG ISLWE+   L ++++KF KR+F I DED SG +DFREFV++LWNYCTL KAALI+FAFD XXXXXXXXXX  E++L+LKEVYG++  ++ QAQ +M K++   +   +  I   +F +F R +PA+LYPAF LQ  +Q K
Sbjct:    1 KIDQDGSGSISLWEMLEHLQLQRNKFTKRVFSIMDEDNSGEIDFREFVIALWNYCTLGKAALILFAFDXXXXXXXXXXXXDEIKLMLKEVYGKDVSNSQQAQMVMGKIQKFSESKADEEIGKEEFSDFVRRNPALLYPAFQLQMTLQRK 149

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig107.1017.1 vs. uniprot

BLAST of mRNA_C-linearis_contig107.1017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FMZ9_ECTSI	9.550e-109	84.65	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S3XL51_HETAK	2.170e-46	48.83	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A2R5GVS2_9STRA	1.170e-43	40.93	Calcium-dependent protein kinase 1 n=1 Tax=Hondaea...	[more]
A0A482T6P1_9ARCH	1.630e-43	40.82	Uncharacterized protein n=1 Tax=archaeon TaxID=190...	[more]
A0A7S4A064_9STRA	2.360e-43	41.89	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
A0A4Q3A667_9BACT	9.760e-43	39.90	Uncharacterized protein (Fragment) n=1 Tax=Verruco...	[more]
A0A7S3HMR9_9STRA	4.750e-41	45.54	Hypothetical protein n=1 Tax=Spumella elongata Tax...	[more]
A0A8J2SI54_9STRA	1.890e-39	39.18	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
A0A7S3M126_9STRA	5.340e-39	33.59	Hypothetical protein n=1 Tax=Spumella elongata Tax...	[more]
A0A7S2F8V1_9STRA	2.390e-38	55.70	Hypothetical protein (Fragment) n=1 Tax=Florenciel...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig107	contig	C-linearis_contig107:61308..65054 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	337.0
Seed ortholog evalue	1.5e-89
Seed eggNOG ortholog	2880.D7FMZ9
Hectar predicted targeting category	other localisation
EggNOG free text desc.	EF-hand, calcium binding motif
EggNOG OGs	2CXXS@1,2S4MR@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	8
Model size	2164
Cds size	1503
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig107.1017.1	prot_C-linearis_contig107.1017.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig107 61846..64931 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927404.3316424-UTR-C-linearis_contig107:61307..61845	1622927404.3316424-UTR-C-linearis_contig107:61307..61845	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig107 61308..61845 -
1690879681.3182926-UTR-C-linearis_contig107:61307..61845	1690879681.3182926-UTR-C-linearis_contig107:61307..61845	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig107 61308..61845 -
1622927404.4541812-UTR-C-linearis_contig107:64931..65054	1622927404.4541812-UTR-C-linearis_contig107:64931..65054	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig107 64932..65054 -
1690879681.4093692-UTR-C-linearis_contig107:64931..65054	1690879681.4093692-UTR-C-linearis_contig107:64931..65054	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig107 64932..65054 -

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig107:61308..65054-
coding sequence from alignment at C-linearis_contig107:61308..65054-

protein sequence of mRNA_C-linearis_contig107.1017.1

>prot_C-linearis_contig107.1017.1 ID=prot_C-linearis_contig107.1017.1|Name=mRNA_C-linearis_contig107.1017.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=501bp
MGQAIGKRSLVPKPVSIYDTSVWARKYRHDFEALQLSEEQVRLMWDEYCK
IDEDKSGEISLWELFGALDMKQSKFAKRIFRIFDEDGSGSVDFREFVMSL
WNYCTLSKAALIMFAFDLYDNDNSGEIDLTEVELLLKEVYGREFQSNTQA
QTIMAKMRGGDLGMERNINVNQFREFCRTHPAVLYPAFVLQTQMQEKILG
SKFWSSCSNARVKLSSGAYVDIAAILQAHVNEKAFQDLIDTKDVVTGKQV
TPLANADNVAMLQMSGTLANRRLLRTTIKTHMSTINSMASNADDANDVGT
LQGAAQGGKVENADGKKGVSWGTVKTHKVYVIALDGDEHGKEVVEPGTIT
QVPPETPQEMPASSTESTASPGPSSGAATRALKTKLLSPGGASQKALVAR
QESKLSATPQKPTTARSRPAAGTASRNPPAEKASLSNLSARRKPVRKVPR
YGGASTYISRQVRLIWNDAPRIVHVVEQSRQAVTKKGMGYILFLRETWLS
*

mRNA from alignment at C-linearis_contig107:61308..65054-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig107.1017.1 ID=mRNA_C-linearis_contig107.1017.1|Name=mRNA_C-linearis_contig107.1017.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3747bp|location=Sequence derived from alignment at C-linearis_contig107:61308..65054- (Chordaria linearis ClinC8C monoicous)
ACACCTTGCGCCCACACACCACATGGGCTTGTGAGCGACAATTCACGTGC
GAGGTTTGTCCTTGTAAACTCACAATGCACGAGGCTTCGCATTGATGGAG
TTGTTTGCGAAGGGGGCAGCTTCATGGGCCAGGCGATTGGAAAGAGGTCA
CTCGTCCCGAAGCCCGTGTCGATATACGACACCAGTGTCTGGGCAAGGAA
ATACCGCCACGATTTTGAGGCACTGCAGCTGTCGGAGGAGCAAGTTAGGC
TGATGTGGGATGAGTATTGCAAGGTGAGCACGGGAGCAGCTGTTGCCAGG
TACAGTGACATATAGCGAGCATTTGTTTGGTTCACAGCTGTCTAACACCT
TCTTCTCTACAGCAGCAGCATATACATACGGTCGACTACCACTTGCACGC
TCGCTATTGCTCGTTCTCAAGGCCCAAGGGGAAGAACTGTGTGGCACCCG
CCGTCTGACAGTGCTTAATAGGATGCCCTTCTTGGTACAGCATACAACAA
ATGCCAGACACAAAGCAATTTGATTCAACTTCTTGCGCGTACAGGTTGGG
GCCCAGGGCAGCGTGTAAGATTGCTCTTGTAGGTTGCTGTCAGCGACATT
GGTTCGCCATGAAAAATGTATTTTACCTCACTTGTCCTGTTCATCGATTG
GCCGTGCAGATTGACGAGGACAAGTCAGGAGAAATCAGTCTCTGGGAGTT
GTTTGGAGCTCTGGATATGAAGCAGAGCAAATTTGCCAAACGGATTTTCA
GGTACGAGACGGAGCTAGGGTAAAGGTTTTTGGACCCGGCAAGACCCGGC
AAGCTTTAGCCACCACGCTACCAAAACGCAAGTGACACTTGTCAAACGCA
ACCGTTGAACAGCGGATGCTTCTTGTCTCATCGCAGTATTTCTCATCGCA
GTATTTCTGGCCGTCCCCAACTTTCGCGACAGGATATTTGACGAAGACGG
AAGCGGATCGGTAGATTTTCGAGAGTTCGTTATGAGCCTGTGGAACTACT
GCACCCTCTCCAAGGCGGCGTTGATAATGTTTGCTTTTGACCTGTACGAC
AACGACAATAGCGGCGAAATCGACCTCACCGAGGTGGAACTATTGCTGAA
GGAGGTGTATGGGCGTGAGTTTCAGTCCAACACCCAGGCGCAGACAATTA
TGGCGAAGATGAGGGGTGGGGATCTCGGCATGGAAAGAAATATCAACGTG
AATCAGTTTCGAGAGTTTTGTAGAACGCACCCGGCTGTTTTGTATCCGGC
ATTCGTGCTACAGACGCAGATGCAAGAGAAGATACTGGGCTCTAAATTTT
GGAGTTCGTGCAGCAACGCGCGGGTGAAACTATCCAGCGGGGCATACGTC
GATATCGCAGCAATCCTACAAGCTCACGTCAACGAAAAGGTAAGCTCCGG
AAATTTCGAGTCCTCGTCCTGGCGTTCGCGTTCAACATTTGTCGCATGTT
ACCACTCGACGCACTTGATTCCCTTGACACACACCAACTTTTGGCAATAT
TTCTTAAGTTATAGGTATTTCGTAGAGGGTTGTGTAGAAGAGTAACTGCA
ACGGCAAGGGTAACTTCTTGGTGGCCTTCTAATCTGGTTCCTTGTACGCT
GTTCAGGCTTTTCAAGACCTTATCGACACTAAAGATGTTGTGACGGGGAA
GCAAGTGACGCCCTTGGCAAATGCGGACAACGTTGCTATGCTACAAATGT
CCGGTACTCTGGCAAATAGGTGAGGAGAAGTAACGGGAAAAGAAGCTGTG
AAACTTGAGGGACCGTTCGGGTCGATTCGGTTGGTTTTTGAGCGAGCCAT
CACTCAACACCCGAGGAGACAAAAAATATAACACGGAACACGACAATGAC
TTTTGTGAAACGACAGGCGCTTGTTGCGTACGACCATCAAGACGCATATG
TCAACCATCAACTCCATGGCATCAAACGCAGACGATGCCAACGACGTTGG
GACGCTTCAAGGTGAGCCAGAGTCAAGCACGACAAAAGAAAACATAGGAG
AAGCCAGAAAACAAAACTTTGATTGTCGCAGGACGTTCACTTCGTCGTGA
TAACCCACTACTTCGAAGTATACCCATGCCCCACTACTGCTGCTGTGCAT
TCTTGTTGGCGGGAAGGAGCTGCGCAAGGTGGGAAAGTTGAGAACGCAGA
TGGGAAAAAAGGTGTGAGCTGGGGGACGGTGAAGACCCACAAAGTGTACG
TCATTGCATTGGACGGGGACGAGCATGGGAAAGAGGTAGGTAAAAGCGTA
TAAATGGGGTAGAGAAGCGAATGAAACGTGGAAGAAGACGTAGGGTGGTC
GGTCTATTTCTGCTCTGTAGGCCGGCCCGTCGTACGCAGCGCTACCTTGC
ATCGCTTGTATTGAGTTGCTTGAAACCTCGGAGCAATGAAAATCGTTCAA
GGTGTCTTCCTTGGCGCTGGCGAACAGGTCGTTGAACCAGGCACCATTAC
ACAAGTACCACCAGAGACTCCGCAGGAAATGCCAGCGTCGTCGACAGAGT
CCACGGCAAGTCCTGGTCCATCGAGCGGGGCGGCTACGCGAGCATTGAAA
ACAAAGCTCCTCAGCCCGGGAGGTGCCTCGCAAAAGGCGCTCGTCGCGAG
ACAAGAGAGTAAGCTGTCTGCAACCCCCCAGAAGCCGACCACAGCCAGGT
ACGGAGATGAACTTCTCAGCAACACTGCCAGTGGAACCTATAAGAAATGG
GCGATTAGGAATAGAGCGTCCCAAAAGGGGTTATGTAAACGTTAATGCTG
TTCGAAACACAGCAGCACGCACTCTACAAGACGAGAAAAACACCTCAAAC
ACATCAATAGCTCGTTTCGTTCAACTTGTTTCAACGTAGAATCTGTCTAT
GAAGCAGGCTTCAAAACCAACGGCAAGCTTTCAAAACTGTCCGAGAGATG
TCCAACTGTTTTGAGCCCTTCACTTACGCGACACGTCGAATACACACCAA
CAGGTCTAGACCTGCCGCTGGGACGGCATCGCGAAATCCGCCGGCGGAGA
AAGCTAGCTTGTCTAACTTGTCTGCACGTCGAAAACCGGTACGTAAAGTG
CCTAGATATGGTGGAGCTTCAACCTATATAAGTAGACAGGTGCGCTTGAT
ATGGAACGATGCACCTAGAATAGTTCACGTTGTGGAGCAGAGTCGACAAG
CGGTCACAAAAAAAGGTATGGGATACATTTTGTTTCTTCGCGAGACGTGG
CTCTCTTGAGAAATAATAGTTTTCTACATGCCACGCACAGCTTGGTGACA
CAACCGCACCATTTACGAAGCGCACCTCCCTTGCATGGCCTTTACGCTTG
ACTTCCTTCTTCTCGCAGATGCAACCGGCGCGAGGTAGCGACGATGGTCC
CCGCAGATAGCAGGCCGGAAATTGTGTCAGAACAATGTGTGACCTAGACA
CAAGTTGTGTCTTCGTGGGTCGATTTCAGTAACACGACGAGTGCGTGAGT
GCATACATAAGGCAGCGGCTGTAGATGCACGTCACAGCAGTAGGCAGCGA
GCAATGCACTGCAGGATAGAACGTAGCAAGTAAAGAGCCGAGATTATCGG
AACTTCTCAGGATACCCCGAGAGGACCCTGCTTTGTCAAGTAGAAACTGG
GATCCTGGCACCAGGGTCCCTGGAGATCGTTTTTATGTTTTTTGTTTCGT
TTCTGGAGCCCTGAGATGCACGCGCCCCCGCGCCCACCTCTCTCACTCCT
CTCCAATACCCAAGCAAACCTGACCAAGGAGTCAGTCAGTAGATCAA

Coding sequence (CDS) from alignment at C-linearis_contig107:61308..65054-

>mRNA_C-linearis_contig107.1017.1 ID=mRNA_C-linearis_contig107.1017.1|Name=mRNA_C-linearis_contig107.1017.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3006bp|location=Sequence derived from alignment at C-linearis_contig107:61308..65054- (Chordaria linearis ClinC8C monoicous)
ATGGGCCAGGCGATTGGAAAGAGGTCACTCGTCCCGAAGCCCGTGTCGAT
ATACGACACCAGTGTCTGGGCAAGGAAATACCGCCACGATTTTGAGGCAC
TGCAGCTGTCGGAGGAGCAAGTTAGGCTGATGTGGGATGAGTATTGCAAG
ATGGGCCAGGCGATTGGAAAGAGGTCACTCGTCCCGAAGCCCGTGTCGAT
ATACGACACCAGTGTCTGGGCAAGGAAATACCGCCACGATTTTGAGGCAC
TGCAGCTGTCGGAGGAGCAAGTTAGGCTGATGTGGGATGAGTATTGCAAG
ATTGACGAGGACAAGTCAGGAGAAATCAGTCTCTGGGAGTTGTTTGGAGC
TCTGGATATGAAGCAGAGCAAATTTGCCAAACGGATTTTCAGATTGACGA
GGACAAGTCAGGAGAAATCAGTCTCTGGGAGTTGTTTGGAGCTCTGGATA
TGAAGCAGAGCAAATTTGCCAAACGGATTTTCAGGATATTTGACGAAGAC
GGAAGCGGATCGGTAGATTTTCGAGAGTTCGTTATGAGCCTGTGGAACTA
CTGCACCCTCTCCAAGGCGGCGTTGATAATGTTTGCTTTTGACCTGTACG
ACAACGACAATAGCGGCGAAATCGACCTCACCGAGGTGGAACTATTGCTG
AAGGAGGTGTATGGGCGTGAGTTTCAGTCCAACACCCAGGCGCAGACAAT
TATGGCGAAGATGAGGGGTGGGGATCTCGGCATGGAAAGAAATATCAACG
TGAATCAGTTTCGAGAGTTTTGTAGAACGCACCCGGCTGTTTTGTATCCG
GCATTCGTGCTACAGACGCAGATGCAAGAGAAGATACTGGGCTCTAAATT
TTGGAGTTCGTGCAGCAACGCGCGGGTGAAACTATCCAGCGGGGCATACG
TCGATATCGCAGCAATCCTACAAGCTCACGTCAACGAAAAGGATATTTGA
CGAAGACGGAAGCGGATCGGTAGATTTTCGAGAGTTCGTTATGAGCCTGT
GGAACTACTGCACCCTCTCCAAGGCGGCGTTGATAATGTTTGCTTTTGAC
CTGTACGACAACGACAATAGCGGCGAAATCGACCTCACCGAGGTGGAACT
ATTGCTGAAGGAGGTGTATGGGCGTGAGTTTCAGTCCAACACCCAGGCGC
AGACAATTATGGCGAAGATGAGGGGTGGGGATCTCGGCATGGAAAGAAAT
ATCAACGTGAATCAGTTTCGAGAGTTTTGTAGAACGCACCCGGCTGTTTT
GTATCCGGCATTCGTGCTACAGACGCAGATGCAAGAGAAGATACTGGGCT
CTAAATTTTGGAGTTCGTGCAGCAACGCGCGGGTGAAACTATCCAGCGGG
GCATACGTCGATATCGCAGCAATCCTACAAGCTCACGTCAACGAAAAGGC
TTTTCAAGACCTTATCGACACTAAAGATGTTGTGACGGGGAAGCAAGTGA
CGCCCTTGGCAAATGCGGACAACGTTGCTATGCTACAAATGTCCGGTACT
CTGGCAAATAGGCTTTTCAAGACCTTATCGACACTAAAGATGTTGTGACG
GGGAAGCAAGTGACGCCCTTGGCAAATGCGGACAACGTTGCTATGCTACA
AATGTCCGGTACTCTGGCAAATAGGCGCTTGTTGCGTACGACCATCAAGA
CGCATATGTCAACCATCAACTCCATGGCATCAAACGCAGACGATGCCAAC
GACGTTGGGACGCTTCAAGGCGCTTGTTGCGTACGACCATCAAGACGCAT
ATGTCAACCATCAACTCCATGGCATCAAACGCAGACGATGCCAACGACGT
TGGGACGCTTCAAGGAGCTGCGCAAGGTGGGAAAGTTGAGAACGCAGATG
GGAAAAAAGGTGTGAGCTGGGGGACGGTGAAGACCCACAAAGTGTACGTC
ATTGCATTGGACGGGGACGAGCATGGGAAAGAGGAGCTGCGCAAGGTGGG
AAAGTTGAGAACGCAGATGGGAAAAAAGGTGTGAGCTGGGGGACGGTGAA
GACCCACAAAGTGTACGTCATTGCATTGGACGGGGACGAGCATGGGAAAG
AGGTCGTTGAACCAGGCACCATTACACAAGTACCACCAGAGACTCCGCAG
GAAATGCCAGCGTCGTCGACAGAGTCCACGGCAAGTCCTGGTCCATCGAG
CGGGGCGGCTACGCGAGCATTGAAAACAAAGCTCCTCAGCCCGGGAGGTG
CCTCGCAAAAGGCGCTCGTCGCGAGACAAGAGAGTAAGCTGTCTGCAACC
CCCCAGAAGCCGACCACAGCCAGGTCGTTGAACCAGGCACCATTACACAA
GTACCACCAGAGACTCCGCAGGAAATGCCAGCGTCGTCGACAGAGTCCAC
GGCAAGTCCTGGTCCATCGAGCGGGGCGGCTACGCGAGCATTGAAAACAA
AGCTCCTCAGCCCGGGAGGTGCCTCGCAAAAGGCGCTCGTCGCGAGACAA
GAGAGTAAGCTGTCTGCAACCCCCCAGAAGCCGACCACAGCCAGGTCTAG
ACCTGCCGCTGGGACGGCATCGCGAAATCCGCCGGCGGAGAAAGCTAGCT
TGTCTAACTTGTCTGCACGTCGAAAACCGGTACGTAAAGTGCCTAGATAT
GGTGGAGCTTCAACCTATATAAGTAGACAGGTGCGCTTGATATGGAACGA
TGCACCTAGAATAGTTCACGTTGTGGAGCAGAGTCGACAAGCGGTCACAA
AAAAAGGTATGGGATACATTTTGTTTCTTCGCGAGACGTGGCTCTCTTGA
GTCTAGACCTGCCGCTGGGACGGCATCGCGAAATCCGCCGGCGGAGAAAG
CTAGCTTGTCTAACTTGTCTGCACGTCGAAAACCGGTACGTAAAGTGCCT
AGATATGGTGGAGCTTCAACCTATATAAGTAGACAGGTGCGCTTGATATG
GAACGATGCACCTAGAATAGTTCACGTTGTGGAGCAGAGTCGACAAGCGG
TCACAAAAAAAGGTATGGGATACATTTTGTTTCTTCGCGAGACGTGGCTC
TCTTGA