mRNA_C-linearis_contig107.1013.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig107.1013.1
Unique NamemRNA_C-linearis_contig107.1013.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:24533..25242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size683
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1013.1prot_C-linearis_contig107.1013.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig107 24901..25242 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927402.9982622-UTR-C-linearis_contig107:24532..248171622927402.9982622-UTR-C-linearis_contig107:24532..24817Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 24533..24817 +
1690879680.6457548-UTR-C-linearis_contig107:24532..248171690879680.6457548-UTR-C-linearis_contig107:24532..24817Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 24533..24817 +
1622927403.008358-UTR-C-linearis_contig107:24844..249001622927403.008358-UTR-C-linearis_contig107:24844..24900Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 24845..24900 +
1690879680.6540966-UTR-C-linearis_contig107:24844..249001690879680.6540966-UTR-C-linearis_contig107:24844..24900Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 24845..24900 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927403.016686-CDS-C-linearis_contig107:24900..252421622927403.016686-CDS-C-linearis_contig107:24900..25242Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 24901..25242 +
1690879680.667693-CDS-C-linearis_contig107:24900..252421690879680.667693-CDS-C-linearis_contig107:24900..25242Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 24901..25242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig107.1013.1

>prot_C-linearis_contig107.1013.1 ID=prot_C-linearis_contig107.1013.1|Name=mRNA_C-linearis_contig107.1013.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=114bp
MFLSHGPTFEQISFPSLTNEIPPILTTFDTFRRTGRKRLCMSVIFFACVR
FCYVYVCVCLVLVCSVSGAQTAAAAKGVCGALLRSTGRGPCFHGPPQRIL
LTTPTRHRPNSSS*
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mRNA from alignment at C-linearis_contig107:24533..25242+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig107.1013.1 ID=mRNA_C-linearis_contig107.1013.1|Name=mRNA_C-linearis_contig107.1013.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=710bp|location=Sequence derived from alignment at C-linearis_contig107:24533..25242+ (Chordaria linearis ClinC8C monoicous)
CGAGGAACTGCAAGTAAGCGACCCACCCCGCCCGCACCAATCATCAATCA
TCCATCATTAACAACGTGGGGGGACAAAAGACGATCAAAGCGTATGACTT
GAGAGGTAGGACGTGGTATGTAAAACATGAGACGAGAAATGCAGCGAATC
GGAACGGTGCGCATCTGCAGCCTTGACGATACGGTCGGTGCAAGGTGCAA
GTTGTTTTGGGGCTGGGGCTGGGGCTGGGGCTGGGGCTGGGCAGCCCAAG
ACTTGGACGGTTAGAAGGTTCGATTGCAAAATAAAGTAACATCAACACGC
CGTGGATGGAAGATAAAAAAAGAAACCGTCTATACTGTTAGGCTCTCGCG
TGGCCCTCTTTTTTGGCCATGTTTCTGTCACACGGGCCTACATTTGAACA
AATTTCATTTCCTTCTTTGACCAATGAAATCCCACCAATTTTGACAACTT
TCGACACGTTCAGGCGAACAGGCCGCAAACGATTGTGTATGAGCGTGATA
TTTTTTGCGTGTGTGCGTTTTTGTTATGTGTATGTGTGTGTGTGTTTGGT
CTTGGTGTGCAGTGTCTCGGGTGCACAGACAGCAGCAGCTGCAAAAGGTG
TGTGTGGTGCGCTGCTCCGCTCAACTGGACGGGGACCATGCTTCCACGGT
CCGCCGCAACGAATATTGCTGACAACGCCGACGAGGCATAGGCCCAACTC
CTCCTCCTGA
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Coding sequence (CDS) from alignment at C-linearis_contig107:24533..25242+

>mRNA_C-linearis_contig107.1013.1 ID=mRNA_C-linearis_contig107.1013.1|Name=mRNA_C-linearis_contig107.1013.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at C-linearis_contig107:24533..25242+ (Chordaria linearis ClinC8C monoicous)
ATGTTTCTGTCACACGGGCCTACATTTGAACAAATTTCATTTCCTTCTTT
GACCAATGAAATCCCACCAATTTTGACAACTTTCGACACGTTCAGGCGAA
CAGGCCGCAAACGATTGTGTATGAGCGTGATATTTTTTGCGTGTGTGCGT
TTTTGTTATGTGTATGTGTGTGTGTGTTTGGTCTTGGTGTGCAGTGTCTC
GGGTGCACAGACAGCAGCAGCTGCAAAAGGTGTGTGTGGTGCGCTGCTCC
GCTCAACTGGACGGGGACCATGCTTCCACGGTCCGCCGCAACGAATATTG
CTGACAACGCCGACGAGGCATAGGCCCAACTCCTCCTCCTGAATGTTTCT
GTCACACGGGCCTACATTTGAACAAATTTCATTTCCTTCTTTGACCAATG
AAATCCCACCAATTTTGACAACTTTCGACACGTTCAGGCGAACAGGCCGC
AAACGATTGTGTATGAGCGTGATATTTTTTGCGTGTGTGCGTTTTTGTTA
TGTGTATGTGTGTGTGTGTTTGGTCTTGGTGTGCAGTGTCTCGGGTGCAC
AGACAGCAGCAGCTGCAAAAGGTGTGTGTGGTGCGCTGCTCCGCTCAACT
GGACGGGGACCATGCTTCCACGGTCCGCCGCAACGAATATTGCTGACAAC
GCCGACGAGGCATAGGCCCAACTCCTCCTCCTGA
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