mRNA_C-linearis_contig107.1011.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig107.1011.1
Unique NamemRNA_C-linearis_contig107.1011.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: D7FHF8_ECTSI (Ribonuclease HI n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHF8_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 2.200e-76
Identity = 180/360 (50.00%), Postives = 226/360 (62.78%), Query Frame = 3 
Query:  297 LALSLLRVVGFGTTSSRP--------RACVCA-------------------SNRVRARPRGTPMVSMASELSKTAISRMRVAELKQELATRGLESDGIRPVLQARLGQAAEVQRARNVMDRVHQRPSAYARTASAEADSIAGT--PPRLARGASLSKRTGRGPL-----SQRARSMSTSLPDPLRSSSKHKYLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYK------------------VSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMDTEISSTFTHPSFG-DSAE 1217
            +A+ L+R  G G  +SRP        RAC  A                   ++RV +R  GT  V M + +S+TAI++MRVAEL++ELA+RGL++ GIRPVLQ RL +A E + A+ V+DR  QR     R+ + E    AGT  PP  AR    + +  R P       Q+ R +STS   P R  S   +L+QFDGGSRGNPGPSG GAVLYRL  SG R EVWS SVW+G+ RTNNEAEY GLIEGL AA++LGIKRL+VEGDSKL+IQQMLGNYK                  V+SPKM PLF++A +I+K+F+ LE+ HI RA N RAD LAN+AMDTE SS+ TH S+  D AE
Sbjct:    1 MAVCLMRAAGLG--ASRPLAFAARHQRACSAAGRSKAWCSRGGXXXXXXXSASRVSSRALGTG-VRMGAAISRTAIAKMRVAELREELASRGLDNTGIRPVLQGRLIEAKETEWAQAVIDRSRQRE----RSNTTEPPRAAGTTAPPGPARSQVATSQAARTPSPRIRQQQQQRGISTSSTKPGRQRST-THLLQFDGGSRGNPGPSGCGAVLYRLDESGEREEVWSSSVWIGEKRTNNEAEYRGLIEGLIAAEKLGIKRLSVEGDSKLVIQQMLGNYKGKQGKTERGGVGGGRGGGVTSPKMQPLFREATTISKAFDALELGHIMRAHNERADDLANIAMDTETSSSCTHRSYSTDLAE 352
[Close]
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: A0A7S2KCF7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KCF7_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.420e-33
Identity = 69/133 (51.88%), Postives = 89/133 (66.92%), Query Frame = 3 
Query:  768 YLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMD 1166
            Y++QFDGGSRGNPG +GAG VLY   G     EVW G  ++G+  TNNEAEY+GL+ GL  A+ +G+  + V+GDS+LI++Q+ G YK  S K+ P F   KS+ K F   E+ HI R  N RAD LAN AMD
Sbjct:   11 YVLQFDGGSRGNPGTAGAGMVLYDEVGH----EVWHGRHYLGEHSTNNEAEYTGLLAGLKCARAIGVSNIVVQGDSELIVKQLQGKYKCKSSKLIPYFTSVKSLIKGFNSFEVRHIPREQNFRADELANEAMD 139
[Close]
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: A0A6C0DSN1_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DSN1_9ZZZZ)

HSP 1 Score: 132 bits (331), Expect = 5.940e-32
Identity = 70/140 (50.00%), Postives = 96/140 (68.57%), Query Frame = 3 
Query:  765 KYLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMDTEISST 1184
            +Y ++FDG S+GNPGP+GAGAV+Y+        E+W+ SV+VG   TNN AEY+GLI GL  A ELGIK L V GDS+LII+QM G YKV S  +   + KAK++++   ++  EHI R  N RAD LAN  + +++SS+
Sbjct:   26 EYCLKFDGCSKGNPGPAGAGAVIYKND-----EEIWANSVYVGDKETNNVAEYNGLIMGLTKANELGIKELLVMGDSELIIKQMKGEYKVKSVNIIEYYLKAKTLSRFLSEVHYEHIYRKDNTRADELANFGLQSKLSSS 160
[Close]
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: A0A6T8JIG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8JIG0_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.610e-31
Identity = 69/134 (51.49%), Postives = 90/134 (67.16%), Query Frame = 3 
Query:  768 YLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMDT 1169
            Y +QFDGGSRGNPG SGAG V+Y    +    EVW+GS  + +  TNNEAEY+ L++GL  A+ LGI+ LAV+GDS LI+ Q+ G YKV S  + P  + A  +  +F   E+ HI R  NGRAD LAN+AMD+
Sbjct:   37 YNLQFDGGSRGNPGLSGAGMVIY----NDKSQEVWNGSYLLPKEATNNEAEYTALVKGLQHARRLGIRHLAVQGDSNLIVMQITGRYKVKSQHLKPFHRDAVELRSAFSTFEISHIPREENGRADELANIAMDS 166
[Close]
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: A0A6C0DKZ1_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DKZ1_9ZZZZ)

HSP 1 Score: 127 bits (320), Expect = 1.760e-30
Identity = 68/138 (49.28%), Postives = 93/138 (67.39%), Query Frame = 3 
Query:  765 KYLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMDTEIS 1178
            +Y ++FDG S+GNPGP+GAGAV+Y+        E+W+ S +VG   TNN AEY GLI GL  A ELGIK L V GDS+LII+QM G YKV S  +   + KAK++++ F+ ++ EHI R  N RAD LAN+ +   ++
Sbjct:   27 EYCLKFDGCSKGNPGPAGAGAVIYKND-----QEIWANSKYVGDKETNNVAEYHGLIMGLSRANELGIKELLVMGDSELIIKQMKGEYKVKSVNIIEHYLKAKTLSRLFDNIKYEHIYRKDNTRADELANLGLQCNMN 159
[Close]
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: A0A4D9D4W7_9STRA (RNase H type-1 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4W7_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.220e-30
Identity = 69/143 (48.25%), Postives = 102/143 (71.33%), Query Frame = 3 
Query:  765 KYLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGR--TNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMDTEISSTF 1187
            +YL++FDGGSRGNPGP GAG V+Y      + V+V   S+W+G     TNNEAEY GL+ GL AAK+LGI+R+ VEGDS+L+++Q+LG YKV + ++  L+ +A ++ ++F +  + H+ER+ N  AD LAN A+D + + TF
Sbjct:  336 QYLLRFDGGSRGNPGPGGAGIVIYE---QASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKKLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCNGTF 475
[Close]
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: A0A7S2ULA3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2ULA3_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.250e-29
Identity = 71/152 (46.71%), Postives = 97/152 (63.82%), Query Frame = 3 
Query:  732 LPDPLRSSSKHKYLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMDTEISSTF 1187
            L DP R+     Y+M+FDGGSRGNPG +G G VLY    +   +EVW+G  ++ +  TNNEAEY GL+ GL  A+ +G++ + V+GDS+LI+ Q+ G YKV S  + PLF+    + + F   E+ HI R  NGRAD LAN AMD + S  F
Sbjct:   71 LIDPNRT-----YVMRFDGGSRGNPGIAGCGMVLYD---ADTGMEVWTGRQYL-ETATNNEAEYKGLLLGLQCARSMGVENIVVQGDSQLIVYQIEGKYKVKSKNLIPLFRAVMDLKRQFSFFEIGHIYRDKNGRADELANEAMDHKTSMGF 213
[Close]
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: A0A6C0M5M4_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0M5M4_9ZZZZ)

HSP 1 Score: 123 bits (309), Expect = 3.860e-29
Identity = 68/138 (49.28%), Postives = 91/138 (65.94%), Query Frame = 3 
Query:  768 YLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMDTEISS 1181
            + M FDG S+GNPG +GAGA ++   G+    EV++ SV+ G   TNNEAEY+GLI GL AA + GI  L V GDS+L+I QM G YKV+SPK+APL++ A ++A  F  +  EH+ R  N RAD L+N  +    SS
Sbjct:    2 HTMYFDGCSKGNPGRAGAGAAIFNEEGT----EVFAESVFAGYSTTNNEAEYTGLILGLNAALKQGIAELQVRGDSQLVIYQMQGKYKVNSPKLAPLYQCATTLAAKFASIGFEHVYRDKNKRADALSNAGIPPSFSS 135
[Close]
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: A0A6C0HEB0_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HEB0_9ZZZZ)

HSP 1 Score: 124 bits (310), Expect = 5.560e-29
Identity = 68/144 (47.22%), Postives = 93/144 (64.58%), Query Frame = 3 
Query:  741 PLRSSSKHKYLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLANVAMDTE 1172
            P    +  +Y+++FDG S+GNPGP+GAGAVLY  Y      E+W    +VG+  TNN AEY GL+ GL  A    I+ L V GDS+L+I+QM G YK+ S  + PL+ +AKS+ K F+K+  EHI R  N RAD LAN A++ +
Sbjct:   21 PAYGENSFEYVLKFDGCSKGNPGPAGAGAVLY--YND---REIWYNRKFVGRKETNNYAEYCGLLLGLNEALRENIRELKVCGDSQLVIKQMKGEYKLKSENLYPLYTEAKSMEKQFDKIVYEHIYRQYNSRADELANAALEDQ 159
[Close]
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Match: A0A6C0JZJ6_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JZJ6_9ZZZZ)

HSP 1 Score: 124 bits (312), Expect = 5.920e-29
Identity = 64/141 (45.39%), Postives = 93/141 (65.96%), Query Frame = 3 
Query:  732 LPDPLRSSSKHKYLMQFDGGSRGNPGPSGAGAVLYRLYGSGARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKLIIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLAN 1154
            +P P    +   Y M FDG S+GNPGP+GAGAV+Y        VE+WS +++VG   TNN AEY+G++ GL  A    I+ L V+GDS+++I+QMLG YKV S  +  ++++AK + K F+K++  H+ R LN RAD L+N
Sbjct:   50 IPCPESDIANPYYCMMFDGCSKGNPGPAGAGAVIYAN-----NVEIWSRAIFVGNRETNNLAEYTGMLLGLNEAVRRNIRVLTVKGDSEVVIKQMLGKYKVKSENLLDIYEQAKDLEKHFDKIDYIHVYRHLNARADALSN 185
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHF8_ECTSI2.200e-7650.00Ribonuclease HI n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A7S2KCF7_9STRA2.420e-3351.88Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6C0DSN1_9ZZZZ5.940e-3250.00RNase H type-1 domain-containing protein n=1 Tax=v... [more]
A0A6T8JIG0_9STRA1.610e-3151.49Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A6C0DKZ1_9ZZZZ1.760e-3049.28RNase H type-1 domain-containing protein n=1 Tax=v... [more]
A0A4D9D4W7_9STRA2.220e-3048.25RNase H type-1 domain-containing protein n=3 Tax=M... [more]
A0A7S2ULA3_9STRA2.250e-2946.71Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6C0M5M4_9ZZZZ3.860e-2949.28RNase H type-1 domain-containing protein n=1 Tax=v... [more]
A0A6C0HEB0_9ZZZZ5.560e-2947.22RNase H type-1 domain-containing protein n=1 Tax=v... [more]
A0A6C0JZJ6_9ZZZZ5.920e-2945.39RNase H type-1 domain-containing protein n=1 Tax=v... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:15833..22017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score265.4
Seed ortholog evalue3.5e-68
Seed eggNOG ortholog2880.D7FHF8
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.RNase H
EggNOG OGs2S89Z@2759,COG0328@1
Ec32 ortholog descriptionRibonuclease H-like domain
Ec32 orthologEc-25_002560.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size2415
Cds size975
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927403.1770678-UTR-C-linearis_contig107:15832..159871622927403.1770678-UTR-C-linearis_contig107:15832..15987Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 15833..15987 +
1690879680.7453802-UTR-C-linearis_contig107:15832..159871690879680.7453802-UTR-C-linearis_contig107:15832..15987Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 15833..15987 +
1622927403.1886008-UTR-C-linearis_contig107:16249..163451622927403.1886008-UTR-C-linearis_contig107:16249..16345Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 16250..16345 +
1690879680.7564824-UTR-C-linearis_contig107:16249..163451690879680.7564824-UTR-C-linearis_contig107:16249..16345Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 16250..16345 +
1622927403.393404-UTR-C-linearis_contig107:20828..220171622927403.393404-UTR-C-linearis_contig107:20828..22017Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 20829..22017 +
1690879680.8251648-UTR-C-linearis_contig107:20828..220171690879680.8251648-UTR-C-linearis_contig107:20828..22017Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 20829..22017 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927403.1966128-CDS-C-linearis_contig107:16345..164701622927403.1966128-CDS-C-linearis_contig107:16345..16470Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 16346..16470 +
1690879680.7652395-CDS-C-linearis_contig107:16345..164701690879680.7652395-CDS-C-linearis_contig107:16345..16470Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 16346..16470 +
1622927403.2048368-CDS-C-linearis_contig107:17372..175361622927403.2048368-CDS-C-linearis_contig107:17372..17536Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 17373..17536 +
1690879680.775656-CDS-C-linearis_contig107:17372..175361690879680.775656-CDS-C-linearis_contig107:17372..17536Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 17373..17536 +
1622927403.3468065-CDS-C-linearis_contig107:18026..183241622927403.3468065-CDS-C-linearis_contig107:18026..18324Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 18027..18324 +
1690879680.7838516-CDS-C-linearis_contig107:18026..183241690879680.7838516-CDS-C-linearis_contig107:18026..18324Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 18027..18324 +
1622927403.3598082-CDS-C-linearis_contig107:18711..188441622927403.3598082-CDS-C-linearis_contig107:18711..18844Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 18712..18844 +
1690879680.7933865-CDS-C-linearis_contig107:18711..188441690879680.7933865-CDS-C-linearis_contig107:18711..18844Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 18712..18844 +
1622927403.3740368-CDS-C-linearis_contig107:19976..200361622927403.3740368-CDS-C-linearis_contig107:19976..20036Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 19977..20036 +
1690879680.8021185-CDS-C-linearis_contig107:19976..200361690879680.8021185-CDS-C-linearis_contig107:19976..20036Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 19977..20036 +
1622927403.3836322-CDS-C-linearis_contig107:20633..208281622927403.3836322-CDS-C-linearis_contig107:20633..20828Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 20634..20828 +
1690879680.8132887-CDS-C-linearis_contig107:20633..208281690879680.8132887-CDS-C-linearis_contig107:20633..20828Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 20634..20828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1011.1prot_C-linearis_contig107.1011.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig107 16346..20828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig107.1011.1

>prot_C-linearis_contig107.1011.1 ID=prot_C-linearis_contig107.1011.1|Name=mRNA_C-linearis_contig107.1011.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=325bp
MPAHLTRSLFIVPMALALSLLRVVGFGTTSSRPRACVCASNRVRARPRGT
PMVSMASELSKTAISRMRVAELKQELATRGLESDGIRPVLQARLGQAAEV
QRARNVMDRVHQRPSAYARTASAEADSIAGTPPRLARGASLSKRTGRGPL
SQRARSMSTSLPDPLRSSSKHKYLMQFDGGSRGNPGPSGAGAVLYRLYGS
GARVEVWSGSVWVGQGRTNNEAEYSGLIEGLCAAKELGIKRLAVEGDSKL
IIQQMLGNYKVSSPKMAPLFKKAKSIAKSFEKLEMEHIERALNGRADTLA
NVAMDTEISSTFTHPSFGDSAERC*
back to top

mRNA from alignment at C-linearis_contig107:15833..22017+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig107.1011.1 ID=mRNA_C-linearis_contig107.1011.1|Name=mRNA_C-linearis_contig107.1011.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6185bp|location=Sequence derived from alignment at C-linearis_contig107:15833..22017+ (Chordaria linearis ClinC8C monoicous)
AAATGACTGATGAACCAAAGAAACATTGACGCATTGACGGAACGGAAAGC
GAAGCTTGCTGCTGGCCATTACGCGTTGGATATTACGCAGAGCACTACCC
AGACTCGGTCGGAAGGGATCTAGGAGCTAACTACACAGCCAACTCTCATC
GCCAGGTTGGCCTCTATTTACCTCTGTTATTGACTGTCTTGAGCCATTTG
TAAATGTGCGCACATATGCCCCTGCTGGGGCATACAGCGCTCACAGCCAC
CTCATCATAGACTCAGCTGCTAGCTCCGCAGTCAACCCAGCTCTCTACAT
TTCCCTCTGGTACATTAGCAACTGAAACGAGTTTAATTAATGTGAAGACA
ACGACAACAAGAAGAGACAACAACCAATTTCATACTTCATACAACTGAAA
ATTGAAAATTGGAATAGGAGCTGGCCAGGGACGAACACACGGACCCCCCA
CACCTCCACCCACACGTGTTGTTGGGGAAGGCGGTGCCTGGTGGGCTTTC
ACCTCAGCATCTGATGCCCGCGCATCTGACGCGGTCGTTGTTCATCGTGC
CCATGGCTCTAGCCCTAAGCCTGCTGCGAGTCGTTGGGTTCGGAACTACC
AGCAGCAGGCCGAGAGCTTGTGTCTGTGCTAGCAACAGGTGTGTGAACCG
CGTCTACGGCCGACGTTACATATGTGTGTGTGTGTGTGTGCGTGCGTTTT
CGTCCCATTTATTTTGGCGGCAGTCCCTTTCCGATCAAGGCGAGACGTGT
ACTACACGTTGCGCTGTATTTAGAGTACCACACTTGTTCAGGGTATTTTT
CTGTACAACTAGAACCAACCGGTGTCACAGGAGGGGGGGTCAACACTGGG
GCTTTTTTCTTCTTTTTCTGTTTTTTTTTGGCCCACCTTCCTCCTGCGGT
GCTTGCCTTGGATTTTATCGCGAGAAGGGTGCAGCCATCCCTTCCCCTCG
TCAACGTGCGAAGTCGAAGTTTGGTACTCACGAGCTTTTTCAGCTATGTT
ATCGCTTTCACCCGCAAAGTCGCAAAAGAAACACCTTCGCTTGGAATTGA
ACTCCAGACTTTGCTGCTATGATAGTGGGTTCGAGGTTAAACCTCTAGTC
CACCGGGGCGACCGGCTGAGTAGACTACATAATAACCCACCAGGTTGAAG
ACTCTATGCGAGAATGCGTGTAGAATTTCTTCATACGACACATGTGCGCC
CTCACTGTTGCAGCAAGCAACAAAGTTACTTGTACGGAGCTTTGCGTGTC
TGCCCCACCTTGCGCCTGGGCTTCGGCGTCTGCTAACAAACGTGTAGCCC
AACTGACACGTATGGACCCACCCGGGCTTTTTGATGCCTCGCTCACCACC
TTCATCTTGACCGAGCCCGATTTTTAGTTTTCGTTTGATGTGCACTATGA
TGTATCGATTCTTGCATCACGTTTTCAGGAGCCTTGGGAGCACAAAGCAC
CTTGAAAACGCACGTGCGTTGAAGTGGGTTGGTTTCTCTTTTCAAGGGAT
TCACTCGAGCTCTGACCCTCCTCCTGTTTGTCGATGGAAGGGTACGGGCG
CGGCCTCGAGGCACACCAATGGTGTCCATGGCGTCGGAGCTCAGCAAGAC
GGCGATATCGAGAATGCGAGTCGCAGAGCTAAAGCAAGAGTTGGCCACCA
GAGGTCTCGAAAGTGACGGCATACGACCCGTCTTGCAGGCTCGATTGGGC
CAAGGCGAGCGCTCGATGGAATATATTTTTGGTGTTTTTTTTTCCAAGTT
TTACGTTTGCTCCCACGTCTGCTCCGGTTCACAGGCTTGGTTGACTCCGC
ACAATCCAGCACAGAGCCAGAAATGGACAACCCGAAACTTTCCCTCGGTA
GTTCGATTTGTTGGTCCGTCTTGGTTTTTGGCATCTCGCTCTTGCGGACA
TGCTTCGAAGTATTAGTATGCTCGACAGCCAACCGAAGCTACGCACGGAA
TAATCTATGCTAGCTCGCTTCTCGCTTGGTCGCGCGTGTTGAGACGGCGG
AGCAGGACCTTCGGTAGTTCACACATTCCAACATTTACATTTTGCCCAAA
CTTTGAAAGTTGTCAAAAATCGTAAGTCACATGCCCAGAGCCTCCTTTCG
TTTACAACCCAAGTATGTGTACTTCCGCCCGTTTGGCAACTCGGGTCATC
ACACCCCTGCTCCATTGTTTCCGCACCTCTGTGATACTCGACAGCGGCTG
AGGTCCAAAGGGCGCGGAACGTGATGGATCGAGTCCATCAGCGCCCCAGT
GCCTACGCTAGGACAGCATCGGCCGAAGCAGATTCGATAGCAGGCACCCC
CCCACGGCTCGCAAGAGGTGCGAGCTTGTCGAAGCGGACGGGGCGGGGGC
CTTTGTCGCAACGCGCGAGAAGCATGAGTACCTCGTTGCCCGATCCCCTG
CGCTCTTCCTCCAAGCACAAGTACTTGATGCAGTTCGATGGAGGCTCGAG
AGGGAACCCTGGGCCGAGTGGTGCCGGGGCTGTGCTGTACAGGTGTGCAA
ACTTGCGTGGTGGCGAAAGAAATAGCACATACGGGTGAAGTGTGCGCTGA
GCTGCAGCATGTATGTAGCTCGCGTTTCCCGACAGCGTTATGGGGTTAGT
CAGACAATGTGATCTACTGCCGAGACGCCGCGGTGCCGCTCCCTAGCTTT
GATGCACCAATTATCGTGACAGCCTGTGGCTCTAAGATAGGTGGCTTACC
TGGTCATCGGAATCTCAATGCCTTCTAGCCCTTGTGCCAGCACACTAGTG
TTCAGAACCGCCTATAGAAAGGCAGAGGCGCCAGCCAGCGCAAGGTTAAC
GGCGCTCCCTGACTTGCTTCACTTTCTCTTGCTGCGGCACACACACCCTT
CGTTCTTCACCTGCTCTGCGGCAAACCAGACTGTACGGAAGCGGAGCGCG
GGTTGAGGTTTGGAGCGGGAGTGTATGGGTAGGGCAAGGGCGGACGAACA
ACGAGGCGGAGTATTCGGGTCTAATCGAGGGGCTGTGCGCCGCGAAGGAA
TTGGGGATCAAGGTGAACTTGGTGCCGCGTGATTGAAGTAGTCTATCCGG
AACGATGGTAAGAAGCATAGCATGCCCTTTGCAGAGCATGTCCTCGCGCA
GTTTCGTGTCTTTCGCTGGGCGGCCGGACGAGCGTCTATTCGCCATGTTG
CCTGGTGATGCAGTACATATCGACAGATTTCGCTACAAGGGTATCGTCTA
TAGCTTCGCAGATGTATCTACGGTTCCGCGGTTCTAGGTTTCACCCCGGC
CTCCTTTGTCGATGCGAGCCGGACCCGGCAAATTGCCGAAGTCAGTCCGC
CTTGTGGCAGGTTGTTTGTTCTTGAGATGCAGTTCACGTAAAACTTCGTA
CGATCGTACTTGGTAATAATTTGCTGACCATTTTCCCGGCAACTCGTGCC
ACACCCTGCACCCGGCACCCTTCATGCCCGGCGTGTAGGGGTATCAAATC
TAGGAATGGTCTGACGAGTACGACCAAGCATGGGTTTTAAGTCCATCCGT
GCCGAATTCCCACATTCCCACCAAAACCAGAACGGAATGCCCACATCCTG
AACCCTTACCGGGCCTCCCAAAGATAGTCAACCTGGAATTGGGGAGGAAA
GAATGTACATCCGGCCGCGTGGATCGGCTGTGCTTGGTGGAAACCGACTT
TTTCCAGGACAGGGTCAATGGCCATGGCCTTTCATAGACTCTCTTGTTGC
CGCTCAATCCGAAGCTTTACCCGGCATGTGAACCTTAACCTTGAGGCAGT
GGCAGTCTGTGCGGCCATTGTTTCCAGGCAGATTCATGGGTAGACACAAA
CAAGCACATGTCCATCCGCGCGCCACGATCGCTGTGCTCTTCGTACTCCG
AAAAGCTTTATGCAACGTCTATTCTTCCGCTGCAGCATTCCATTTCACGG
CTTGTCTGCGTTTGGGTGTCTTATATATCTTATGGTACTTATCTTGAGGT
GGAAATGTGGTGTCTTCACGCAAAGTATATTCCCTCAAAGCATCTTCCAC
GTGATCCTTCTGCAGTACCGTCCTTTATTTCCGTTGATGTGGTGGCCGTC
TTTGTGGTGGTTTTCTATGCTGATACTTCGCATACACGCCTAAAGTGAAA
GTCACTTTGGTTTGTTGTAACGTTCTCATTTTCGCGAATACCAGAGGCTA
GCGGTGGAGGGAGACTCGAAGCTGATCATCCAACAAATGTTGGGAAACTA
CAAGGTATGGAGCCGACTTCCTGGCAGAGAGCTTAAGTCACCACTGTCAC
TGAGGCAAGGAACGGCTGTTTGAACTCCCGACGGCATTCCCGTCAAAAGG
ACCCGCGCAATGGGTGCGCTCTCTCTTAACCTTGCCGGTCTTGTTTGTAT
AGGCATGCGCATTCCTTGAGACTCCTTGGTGAAAGCGACCACAAACAATC
CGAACGTTGCTTGGAAGGGGGATCCTACTGCATCGAGGAGAGCCCTGTGT
TTCACAGAATCAATTGTGCCTTGTACGCGATCCATTTGGGGTCGTGTTCT
CTTGTTAAAGACATTTTTTGTTCAAGATTATGAAAACACTTAAGCCCGTT
GTTCTTTTCTCAGGGGAACGGCACCTACTTGTTGAACCGCACGATAAGTG
ATTCACGTTTCAAAGGAAACAACCCTTCGAATGGGCTTTTGCCGCATGCA
TGTGCAACCTACCAATAGATATCGCTCAGTACGTGTACTTTCCGCGATGC
GTTCGTGTTTCCATTACTTTGGTGCCGGGAGATGCGTTCACTTGCACCAT
CCGTACGCGCCACGTCCCGTCCTGTACCACAACGCTGTCGCTTACGTACA
GGTTTCGAGTCCAAAGATGGCTCCACTGTTCAAGAAAGCCAAGTCAATAG
CAAAATCGTTCGAGAAGCTGGAAATGGAGCACATCGAACGCGCTCTAAAC
GGCCGAGCAGACACGTTGGCGAACGTTGCCATGGATACGGAAATATCCTC
CACGTTCACGCACCCGAGCTTTGGTGACTCGGCGGAGAGATGTTAAAATA
AAATACAGCAACAATGCAGCCGGGGTGGTTGATGCCATTGTTTGGTGTTT
GTGTTGCGGCCGGCGGGTGACTGCGTAAGTGGAGCGGCGTGAGGGAACAG
CTATTTACAGATCGGAACATTCGTTGTGTCTCCTTTGTAGAAAGTGCCCT
GGAATTTGAGGAAATCTCGTGTTCGTGAGAGTTGAAGCTTCAGTATGACG
AGCATCGTGTCGGACATAACGTTGAAGTAGGCCAGTGGTCGATAGACTGA
GTGTCTCCAGCTTGACGGTGTGGCTGGCTGTCTTGCCCGCAGTTTGGTCC
CAGTAGGTTTTCTTCGGGGTGTTTCTGAGCGAATTTTTTGTGCGTCCACG
AAACATTTCTTCCCGTCCAACTTTACTCCCAACTACTTTGTAGTCTAAAT
ACATCATGATAGTTTCTACCCTGATGATCAGTCTCTTCCGCTGGCCTGCA
GCCATTATCTTCACCTCATGTGCAGCAAGGACACGTGTGCAAACAGCGAA
GGAGAAATCGTTTTCACCAAAGGGAGGAAAAGTGCGCAACGTATTACTAT
AGGTGAGTCTGAGCTCCAAAAGTCATTTCCATTTATCTGGACAGTCACCA
ATTCAGACGTAAATCTCTAAATCTCCCTTCTAGCGTTTGGTAATCCGTAC
TGACTTGCGCACATTTCGCCAAATTCCAAATTCGGATAGAGTTTTTGTTT
TTTGGCCTTGATAATTCCCCCGAACCCAAAAGTGTACGCAAAAAAATCAA
AAATTGACTACTTTCGAACACCTGATTCCTACATAATATTTGAACTTGGT
TTCCATTGCCTTGTGCCCATTTTCGGTCCTTGTTGTTTTAGTAAACCTTT
TTGGGTCAGGTACCGCGTATTGGACAGATGAAGGTACTGAGCACAGCGTG
ATCAAAACAAAAGCAAAAAAAGTGGTATTCCAGTTGAGAAGAAAATGCGT
TCGATTGCCTTGCTTCGTGCATTTCCCTTTAGTTTGTTTCGTGTTCTCCG
TTCCGTTTATCGGGCAGCGAGGTACTGCGTGTTGATAGTATCCTTCATGA
GAGTTTGCGATTGAGAGAACCTCGGCCCTTGAGTTGCCCCGACACAACGT
AATAGTCACGCTTGTGCGCATCGTGTTGCAGCGTAGCGCGTCTTCTTCAC
GTTTTGCAATATGTTTTTTAACCATTAGTCTATGC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig107:15833..22017+

>mRNA_C-linearis_contig107.1011.1 ID=mRNA_C-linearis_contig107.1011.1|Name=mRNA_C-linearis_contig107.1011.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at C-linearis_contig107:15833..22017+ (Chordaria linearis ClinC8C monoicous)
ATGCCCGCGCATCTGACGCGGTCGTTGTTCATCGTGCCCATGGCTCTAGC
CCTAAGCCTGCTGCGAGTCGTTGGGTTCGGAACTACCAGCAGCAGGCCGA
GAGCTTGTGTCTGTGCTAGCAACAGATGCCCGCGCATCTGACGCGGTCGT
TGTTCATCGTGCCCATGGCTCTAGCCCTAAGCCTGCTGCGAGTCGTTGGG
TTCGGAACTACCAGCAGCAGGCCGAGAGCTTGTGTCTGTGCTAGCAACAG
GGTACGGGCGCGGCCTCGAGGCACACCAATGGTGTCCATGGCGTCGGAGC
TCAGCAAGACGGCGATATCGAGAATGCGAGTCGCAGAGCTAAAGCAAGAG
TTGGCCACCAGAGGTCTCGAAAGTGACGGCATACGACCCGTCTTGCAGGC
TCGATTGGGCCAAGGGTACGGGCGCGGCCTCGAGGCACACCAATGGTGTC
CATGGCGTCGGAGCTCAGCAAGACGGCGATATCGAGAATGCGAGTCGCAG
AGCTAAAGCAAGAGTTGGCCACCAGAGGTCTCGAAAGTGACGGCATACGA
CCCGTCTTGCAGGCTCGATTGGGCCAAGCGGCTGAGGTCCAAAGGGCGCG
GAACGTGATGGATCGAGTCCATCAGCGCCCCAGTGCCTACGCTAGGACAG
CATCGGCCGAAGCAGATTCGATAGCAGGCACCCCCCCACGGCTCGCAAGA
GGTGCGAGCTTGTCGAAGCGGACGGGGCGGGGGCCTTTGTCGCAACGCGC
GAGAAGCATGAGTACCTCGTTGCCCGATCCCCTGCGCTCTTCCTCCAAGC
ACAAGTACTTGATGCAGTTCGATGGAGGCTCGAGAGGGAACCCTGGGCCG
AGTGGTGCCGGGGCTGTGCTGTACAGCGGCTGAGGTCCAAAGGGCGCGGA
ACGTGATGGATCGAGTCCATCAGCGCCCCAGTGCCTACGCTAGGACAGCA
TCGGCCGAAGCAGATTCGATAGCAGGCACCCCCCCACGGCTCGCAAGAGG
TGCGAGCTTGTCGAAGCGGACGGGGCGGGGGCCTTTGTCGCAACGCGCGA
GAAGCATGAGTACCTCGTTGCCCGATCCCCTGCGCTCTTCCTCCAAGCAC
AAGTACTTGATGCAGTTCGATGGAGGCTCGAGAGGGAACCCTGGGCCGAG
TGGTGCCGGGGCTGTGCTGTACAGACTGTACGGAAGCGGAGCGCGGGTTG
AGGTTTGGAGCGGGAGTGTATGGGTAGGGCAAGGGCGGACGAACAACGAG
GCGGAGTATTCGGGTCTAATCGAGGGGCTGTGCGCCGCGAAGGAATTGGG
GATCAAGACTGTACGGAAGCGGAGCGCGGGTTGAGGTTTGGAGCGGGAGT
GTATGGGTAGGGCAAGGGCGGACGAACAACGAGGCGGAGTATTCGGGTCT
AATCGAGGGGCTGTGCGCCGCGAAGGAATTGGGGATCAAGAGGCTAGCGG
TGGAGGGAGACTCGAAGCTGATCATCCAACAAATGTTGGGAAACTACAAG
AGGCTAGCGGTGGAGGGAGACTCGAAGCTGATCATCCAACAAATGTTGGG
AAACTACAAGGTTTCGAGTCCAAAGATGGCTCCACTGTTCAAGAAAGCCA
AGTCAATAGCAAAATCGTTCGAGAAGCTGGAAATGGAGCACATCGAACGC
GCTCTAAACGGCCGAGCAGACACGTTGGCGAACGTTGCCATGGATACGGA
AATATCCTCCACGTTCACGCACCCGAGCTTTGGTGACTCGGCGGAGAGAT
GTTAAGTTTCGAGTCCAAAGATGGCTCCACTGTTCAAGAAAGCCAAGTCA
ATAGCAAAATCGTTCGAGAAGCTGGAAATGGAGCACATCGAACGCGCTCT
AAACGGCCGAGCAGACACGTTGGCGAACGTTGCCATGGATACGGAAATAT
CCTCCACGTTCACGCACCCGAGCTTTGGTGACTCGGCGGAGAGATGTTAA
back to top