mRNA_C-linearis_contig106.996.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig106.996.1
Unique NamemRNA_C-linearis_contig106.996.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig106.996.1 vs. uniprot
Match: D7FK36_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK36_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.670e-7
Identity = 44/105 (41.90%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:  544 LASAASRGLAGTMSSVLKHGADKEKLDDKGNSPLILASKEGHISAVEVLLEADA--EVKFIGEGPFNSSAL-GMAAQFRHIEVMEAVIGAGGKVNAAFHYGSTTL 849
            L SA  RG A  +S +L  GAD   LD  G SPL+LA++EGH+  V VLL+ DA         GP   SAL   AA+  H+ ++ A+I  G  V A    G+T L
Sbjct:   69 LHSAVRRGEADAVSKLLSEGADAASLDGSGRSPLLLATQEGHLPVVRVLLDGDAGDAACITPNGPNGMSALVKSAARKEHLGILRALIARGADVEATDSGGATAL 173
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BLAST of mRNA_C-linearis_contig106.996.1 vs. uniprot
Match: A0A6H5JY41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY41_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.050e-7
Identity = 47/131 (35.88%), Postives = 73/131 (55.73%), Query Frame = 1 
Query:  469 YEQLAVDLVLKGADPNTADKNQRSPLASAASRGLAGTMSSVLKHG-ADKEKLDDKGNSPLILASKEGHISAVEVLLEADAEV--KFIGEGPFNS-SALGMAAQFRHIEVMEAVIGAGGKVNAAFHYGSTTL 849
            ++ L  + +  GA PN+  +  R+PL  A   G    +S++L       + LD+ G SPL+LAS+ GH S VEVLL A A+   +    G F+  +AL +AA   H+ V++A++G GG  +A   +G T L
Sbjct:  151 HDDLVDNYLTGGACPNSRSRVGRTPLHLADGLGNNRDVSALLGDANTHMDALDNDGFSPLMLASRNGHRSTVEVLLRAGADTTRRATDSGDFSHMAALDVAAAQGHVRVVKAILGNGGDASAVDDHGCTAL 281
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BLAST of mRNA_C-linearis_contig106.996.1 vs. uniprot
Match: D8LE17_ECTSI (Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE17_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 7.680e-6
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:  613 EKLDDKGNSPLILASKEGHISAVEVLLEADAEV--KFIGEGPFNS-SALGMAAQFRHIEVMEAVIGAGGKVNAAFHYGSTTL 849
            + LD+ G SPL+LAS+ GH S VEVLL A A+   +    G F+  +AL +AA   H+ V++A++G GG  +A   +G T L
Sbjct:    2 DALDNDGFSPLMLASRNGHRSTVEVLLRAGADTTPRATDSGDFSHMAALDVAAAQGHVGVVKALLGNGGDASAVDDHGCTAL 83
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BLAST of mRNA_C-linearis_contig106.996.1 vs. uniprot
Match: UPI001C4CEB25 (cyclin-dependent kinase 4 inhibitor C n=1 Tax=Plectropomus leopardus TaxID=160734 RepID=UPI001C4CEB25)

HSP 1 Score: 55.1 bits (131), Expect = 3.350e-5
Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:  472 EQLAVDLVLKGADPNTADKNQRSPLASAASR-GLAGTMSSVLKHGADKEKLDDKGNSPLILASKEGHISAVEVLLEADAEVKFIGEGPFNSSALG-MAAQFRHIEVME 789
            + L   L+  GADPN  D      +   A+R G   ++ +++ HGAD   +D+KGN PL LA++EGH+  V++L+   A+       P  ++ LG  AAQ  HI   E
Sbjct:   46 DALVKALLEAGADPNIRDPVHNLTVTHDAAREGFVDSVRALVDHGADINLVDEKGNLPLHLAAREGHLEVVQLLIGLTAD-------PRATNGLGHTAAQLAHIHKRE 146
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FK36_ECTSI1.670e-741.90Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6H5JY41_9PHAE2.050e-735.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE17_ECTSI7.680e-642.68Chain A, Sank E3_5: An Artificial Ankyrin Repeat P... [more]
UPI001C4CEB253.350e-535.19cyclin-dependent kinase 4 inhibitor C n=1 Tax=Plec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:367016..369905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2078
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.996.1prot_C-linearis_contig106.996.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig106 368665..369003 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927402.0065405-UTR-C-linearis_contig106:367015..3675751622927402.0065405-UTR-C-linearis_contig106:367015..367575Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 367016..367575 -
1690879680.0163-UTR-C-linearis_contig106:367015..3675751690879680.0163-UTR-C-linearis_contig106:367015..367575Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 367016..367575 -
1622927402.0174885-UTR-C-linearis_contig106:368387..3686641622927402.0174885-UTR-C-linearis_contig106:368387..368664Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 368388..368664 -
1690879680.0287821-UTR-C-linearis_contig106:368387..3686641690879680.0287821-UTR-C-linearis_contig106:368387..368664Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 368388..368664 -
1622927402.041967-UTR-C-linearis_contig106:369003..3699051622927402.041967-UTR-C-linearis_contig106:369003..369905Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 369004..369905 -
1690879680.0566735-UTR-C-linearis_contig106:369003..3699051690879680.0566735-UTR-C-linearis_contig106:369003..369905Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 369004..369905 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927402.029561-CDS-C-linearis_contig106:368664..3690031622927402.029561-CDS-C-linearis_contig106:368664..369003Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 368665..369003 -
1690879680.0378633-CDS-C-linearis_contig106:368664..3690031690879680.0378633-CDS-C-linearis_contig106:368664..369003Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 368665..369003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig106.996.1

>prot_C-linearis_contig106.996.1 ID=prot_C-linearis_contig106.996.1|Name=mRNA_C-linearis_contig106.996.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=113bp
MERKTDERHTPLLVAACQESFETMCALLGHGADPNAKSSIGGTALHMICT
IPKVGFEEVVGELLQRGVDSTLLDWDRCAPAGNLNVPDLFGMDDEEDLAC
EDEIKRIRVLLE*
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mRNA from alignment at C-linearis_contig106:367016..369905-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig106.996.1 ID=mRNA_C-linearis_contig106.996.1|Name=mRNA_C-linearis_contig106.996.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2890bp|location=Sequence derived from alignment at C-linearis_contig106:367016..369905- (Chordaria linearis ClinC8C monoicous)
CTCTGTGCCTGGCCTGCCTACCGTCCCCCACACAGCTCCAAACAGATTAC
AGAGCAATATCGCACGCCAGTTGAACATGAGCACCAACAAAAGGAAGCCT
GCATCCCTGGAAGAGTATGCAAAGCCCCTTGTGGCGTCCGCTGCTGCCGG
GAATGCCGAGGTCTTTCAAGCTCTCCTCGAGGCAGGAGCGGACGCCGGAA
CCGACTGCAAGGACTACAACGACGGGTGCACGCTGCTGCACATTGCCATC
CGTGGTGGAAACGTGGGTGTGGTGTCGGCGGTGCTCGACGCAGGCGCAGA
TGTCAACGAGAGGGACTCGGCATCCGACAGATCGCCTCTGTGCCAAGCGT
TGTCGGGGCGGGGAAACGAAGCTGTGGCCAGACGCTTTGGTTCTTGCCGG
AGCGCACGGAAACTTCACAAACCCTCTGAAAAATGTTCTCTTTGAGCTTG
GCCGTTTCGAATGATGAGTACGAGCAGCTTGCTGTAGACCTGGTACTGAA
GGGCGCCGACCCGAACACAGCAGACAAGAACCAAAGGAGTCCGCTTGCGA
GTGCAGCGTCGAGAGGTCTCGCCGGGACGATGTCGAGCGTGTTGAAGCAC
GGGGCGGATAAGGAAAAGCTCGACGACAAGGGTAACTCCCCGTTGATTCT
AGCATCGAAAGAAGGGCATATCTCTGCGGTGGAGGTTCTGCTGGAAGCCG
ATGCTGAGGTCAAATTTATTGGTGAGGGCCCATTCAACTCCTCAGCCCTC
GGCATGGCCGCACAATTTAGGCACATTGAAGTCATGGAGGCCGTCATTGG
CGCGGGGGGCAAGGTGAACGCTGCGTTCCACTATGGCTCCACTACGCTGC
TGGGGAGGGCGACCTGGATACCATCGATGCACTGATCGAGGCAGGCGCCG
ACATGGAGAGGAAGACCGACGAGAGGCATACCCCTCTGCTAGTGGCCGCT
TGCCAAGAGTCGTTTGAGACAATGTGCGCCCTCCTGGGGCATGGGGCGGA
TCCAAACGCCAAGAGTTCCATAGGAGGCACGGCGTTGCACATGATTTGCA
CTATCCCGAAGGTTGGCTTTGAAGAGGTCGTGGGCGAGCTGCTGCAGCGG
GGAGTGGACAGCACTCTCCTGGACTGGGATAGATGTGCCCCAGCGGGCAA
CCTCAACGTTCCGGATTTGTTTGGGATGGACGACGAGGAAGATCTCGCGT
GCGAAGACGAGATTAAGCGGATACGAGTGCTACTAGAGTAGCCCTAGGCC
CAGCGGGTAGGCGTGAGGCCGTCGAGGTTGACTGCTCGTTTTCCGCTTTC
GCGCAGGCAGGAAGAAGGATGGGAGGTGCAGAGGTACTAGGTGCGAACAC
ATGGCGTCACACGCGTTCCAGGATGCAGGAGGTTACACCGCGAGCGCCGA
GGTGACGAGCCAGGGCGGGTACTTGAGCGGTGCGATAGATATACTGGCCC
TGCGGGCATCGGAGACCGTGTTTCGTGCGATCACCAGCTGCTCGTGGTCA
AGACCATCACCTTGTTTGGTGAGTGTGGATGGTGTGATGCAATGCGTCAG
TAAGCAAAGAATTATCGTACAACCGTTTCTTCCCTGATTTTTGTCGAGCG
TCCTCTTAGTGGGGTGTTTCTGAAAGGAAGCTTGGTGGTCTGAAGTGGTC
CTGCTTGCCTGTCTGTGCCCCGACGCGGGCTTGTTTGACAACTTGTTCAT
GACGAAGAGCTCGGAACTCCAACTTGTGGCTAATGTAGTGTACACGCCCC
CCTCAGACTATTGTTGGTCCCATGCGTGGCGAACCCTTCCCCCTCGGGTC
TGAAGTAGCTCTTGGAATTGCTTCGTGAGAGAACGAGCAGAGCCGAATCT
ACAAACAGTTCTCTGTGCATGCCGCCCACAGGATATAGTCAAAGCAAATA
GTGCATTAAAATATCCCGCCGTTGTCTTCCTTGGTTGGCTCCACCAAGAA
AGACAGCTGGTGGAACTTTTTTTATGTTCGCCTGGTAACTTCGTCTTTTC
ATAAGGACCCCAAGGCAGGTGTAAGTGTGGGCAGAAGGGACATTGATATC
TGTAACTCAGATGTAGTGTGCCCAGTATGAAAGACAGAGCATAGCATTTA
TTGCGGTTCTTCGTTTTTTTGCGCCACCGCCCCAGCTCTGCTCCACATGC
ACGGGTTTGGAATCTACAGCAGTTGTTTTCTGCTCTGGGTGTTCCCATCG
CTTATTCTCGCTGCTCTTGCCCCGTCCTCATTTTGCACGATCCAACTTTC
CAATCCTATCAATGCGGACCGGACTGGCTTTTGGTTTCCGCTGCTGACGG
CGAATGCGGCGTTCGCTTGCTTGGAGGCAGAAAGGAGGGCTGGCGTTCCA
TTCGACGGGAAGCTGCAGGGCAAAGTTTGGGTCAAGATCATGTGTTTTTT
TTCGTCTGGCGTATCGTCAGAAGAATATCGCTGAGTCGGCTATACCGTCC
ACGTTTCTTCTCTAATTTGTAAGCCAATGGCGACGTCCGTAGTGAGCTCG
CTTTTTTTTTTCGAGTTTCTATCTTGTATACGGAAAGCGCGCTGTTGCTT
TGGAGCTATTCCTGTTTCCCCCGTTTGTTTTCCATTTGATTGAAGATCTA
TTAGCGAAAGATAGACGGGGTTGTCGACGAGGATTGTCATACCCAAGGTA
GCATACCCGAGGCAGCATCAGGTAAAACGGTCTCAGGCTTCACGATCAGT
TTTTCGTTCTTGTGTGTCAGGAGGATCTGTGCAGAATGATATTTTTTTGC
GCCGCTTTTTGCGCGGTAGATGGCCACCTTGCGGTACCCAAATTGTTTGC
ATGGTTCGAGACCAGACCAGCTGCGTTTTGGGGGTTCGGGGTGGTATGAT
ACGGTGCCGCAGGGTAATTTTGCCTCACATTGAGGCCAAC
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Coding sequence (CDS) from alignment at C-linearis_contig106:367016..369905-

>mRNA_C-linearis_contig106.996.1 ID=mRNA_C-linearis_contig106.996.1|Name=mRNA_C-linearis_contig106.996.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at C-linearis_contig106:367016..369905- (Chordaria linearis ClinC8C monoicous)
ATGGAGAGGAAGACCGACGAGAGGCATACCCCTCTGCTAGTGGCCGCTTG
CCAAGAGTCGTTTGAGACAATGTGCGCCCTCCTGGGGCATGGGGCGGATC
CAAACGCCAAGAGTTCCATAGGAGGCACGGCGTTGCACATGATTTGCACT
ATCCCGAAGGTTGGCTTTGAAGAGGTCGTGGGCGAGCTGCTGCAGCGGGG
AGTGGACAGCACTCTCCTGGACTGGGATAGATGTGCCCCAGCGGGCAACC
TCAACGTTCCGGATTTGTTTGGGATGGACGACGAGGAAGATCTCGCGTGC
GAAGACGAGATTAAGCGGATACGAGTGCTACTAGAGTAGATGGAGAGGAA
GACCGACGAGAGGCATACCCCTCTGCTAGTGGCCGCTTGCCAAGAGTCGT
TTGAGACAATGTGCGCCCTCCTGGGGCATGGGGCGGATCCAAACGCCAAG
AGTTCCATAGGAGGCACGGCGTTGCACATGATTTGCACTATCCCGAAGGT
TGGCTTTGAAGAGGTCGTGGGCGAGCTGCTGCAGCGGGGAGTGGACAGCA
CTCTCCTGGACTGGGATAGATGTGCCCCAGCGGGCAACCTCAACGTTCCG
GATTTGTTTGGGATGGACGACGAGGAAGATCTCGCGTGCGAAGACGAGAT
TAAGCGGATACGAGTGCTACTAGAGTAG
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