mRNA_C-linearis_contig106.994.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig106.994.1
Unique NamemRNA_C-linearis_contig106.994.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig106.994.1 vs. uniprot
Match: D7FSQ5_ECTSI (Pyridoxal-dependent decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ5_ECTSI)

HSP 1 Score: 941 bits (2433), Expect = 0.000e+0
Identity = 486/638 (76.18%), Postives = 521/638 (81.66%), Query Frame = 2 
Query:  119 ENGFSLGAVS-LGNIDLRACVSSRGLTAVATGFLGTWFLLSYVHQAVGKSGSPWVHPRIARPIRRVRGALVAGILLAILLLRAYRDGPSGEKHTATHVSFLEELLGAVRAAVPAGPRLLFVEDALAVILVAAVWRALVKLWRIATSPVAEKKAFVTDRGFAMVRQLPAVARLLQKEVAKTEAHLQATLRPNLADRENLRALPAEGKQGGHVLVEMMLLAQRERSKWDAGKASGAVYSNDEEQSQTVTEAYRLFSRSNPLHPDLWPSGLKFEAEVISMTARLLDGGDDGVCGVLTSGGTESIVLSAKAHRDFYRERGVTSPEIVAATTAHAAIDKACSLMNIRLIKVPVDPATMKADVRATARAMSANTIMVYASAPSFPHGVIDPVEDLAKLAASYGCGLHVDCCLGGFVLPFAKSLGYPIPPFDFVVAGVTSISADTHKYGYAPKGTSVALFRTKELRHQAYFCFPEWTGGLYVTPTIAGSRPGGLSAACWASMVSMGRNGYERAVQGIMETAQAIAQGVRGISGLSLVGDPRSMVVCFRGDKGVNIYKVGDRMSHRGWSLNALQHPPCLHLCVTMCHVGKAAEFLTDLLTSTLEAGATAGEGDENSTAAIYGMASSMPAGPVNVLLRAYTDVTLGS 2029
             +G S  AVS + NI+ R  +S RGL A+A GF+GTW+ L   H+AVG++  PW+HPRI+RPI R RGA V G L  ILL+R                                            V+LVA   RAL ++W I  SP+A K+AFV D GFA+VR LPAVARLLQKEVAKTEAHLQATLRP   D E LR+LPAEGKQ   V+ EM LLA+RER+KWDAGKASGAVYSNDEE S TVTEAYRLFSRSNPLHPDLWPSGLKFEAEVISMTARLLDGGD GVCGVLTSGGTESIVL+AKAHRDFYRERGVTSPEIVAATTAHAAIDKACSLM IRLIKVPVDP TMKADV+ATA AMSANTIMVYASAPSFPHGVIDPVE+LA+LA  YGCGLHVDCCLGGFVLPFAKSLGY + PFDF V GVTSISADTHKYGYAPKGTSVALFR KELRHQAYFCFPEWTGGLYVTPTIAGSRPGGLSAACWASMV MGR+GYE+AV GIMET + +AQGV  ISGLSL+G+PR+MVVCFRGD GVNIYKVGDRMSHRGWSLNALQHPPCLHLCVTMCHVGKA  FL DLL STLEA A AGEGDENSTAAIYGMASSMPAGPVNVLLR YTDVTLGS
Sbjct:    8 RSGMSFAAVSSICNIERRTWLSGRGLAAMAAGFVGTWWFLFCAHKAVGRTRGPWIHPRISRPIHRFRGAFVWGSLFTILLMR--------------------------------------------VVLVAVAVRALRQVWEILASPLAAKQAFVADHGFAVVRNLPAVARLLQKEVAKTEAHLQATLRPGKDDEETLRSLPAEGKQREEVIAEMKLLARRERAKWDAGKASGAVYSNDEEHSSTVTEAYRLFSRSNPLHPDLWPSGLKFEAEVISMTARLLDGGDAGVCGVLTSGGTESIVLAAKAHRDFYRERGVTSPEIVAATTAHAAIDKACSLMKIRLIKVPVDPVTMKADVKATANAMSANTIMVYASAPSFPHGVIDPVEELARLATRYGCGLHVDCCLGGFVLPFAKSLGYSVEPFDFGVEGVTSISADTHKYGYAPKGTSVALFRNKELRHQAYFCFPEWTGGLYVTPTIAGSRPGGLSAACWASMVGMGRDGYEKAVTGIMETVKEVAQGVSDISGLSLLGEPRAMVVCFRGDGGVNIYKVGDRMSHRGWSLNALQHPPCLHLCVTMCHVGKAGVFLADLLASTLEAAAAAGEGDENSTAAIYGMASSMPAGPVNVLLRTYTDVTLGS 601
[Close]
BLAST of mRNA_C-linearis_contig106.994.1 vs. uniprot
Match: A0A6H5JHB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHB1_9PHAE)

HSP 1 Score: 708 bits (1827), Expect = 3.430e-248
Identity = 361/422 (85.55%), Postives = 373/422 (88.39%), Query Frame = 2 
Query:  758 MMLLAQRERSKWDAGKASGAVYSNDEEQSQTVTEAYRLFSRSNPLHPDLWPSGLKFEAEVISMTARLLDGGDDGVCGVLTSGGTESIVLSAKAHRDFYRE--------RGVTSPEIVAATTAHAAIDKACSLMNIRLIKVPVDPATMKADVRATARAMSANTIMVYASAPSFPHGVIDPVEDLAKLAASYGCGLHVDCCLGGFVLPFAKSLGYPIPPFDFVVAGVTSISADTHKYGYAPKGTSVALFRTKELRHQAYFCFPEWTGGLYVTPTIAGSRPGGLSAACWASMVSMGRNGYERAVQGIMETAQAIAQGVRGISGLSLVGDPRSMVVCFRGDKGVNIYKVGDRMSHRGWSLNALQHPPCLHLCVTMCHVGKAAEFLTDLLTSTLEAGATAGEGDENSTAAIYGMASSMPAGPVNVLL 1999
            M LLAQRER+KWDAGKASGAVYSNDEE S TVTEAYRLFSRSNPLHPDLWPSGLKFEAEVISMTARLLDGGD GVCGVLTSGGTESIVL+AKAHRDFYRE        RGVTSPEIVAATTAHAAIDKACSLM IRLIKVPVDP TMKADV+ATA AMSANTIMVY SAPSFPHGVIDPVE LA+LA  YGCGLHVDCCLGGFVLPFAKSLGY + PFDF V GVTSISADTHKYGYAPKGTSVALFR KELRHQ+YFCFPEWTGGLYVTPTIAGSRPGGLSAACWASMV MGRNGYE+AV GIME  +A AQ    IS L      ++MVVCFRGD GVNIYKVGDRMSHRGWSLNALQHPPCLHLCVTMCHVGKA  FL DLL STLEA A AGEGDENSTAAIYGMASSMPAGP N ++
Sbjct:    1 MKLLAQRERAKWDAGKASGAVYSNDEEHSSTVTEAYRLFSRSNPLHPDLWPSGLKFEAEVISMTARLLDGGDAGVCGVLTSGGTESIVLAAKAHRDFYREVAPPFRFLRGVTSPEIVAATTAHAAIDKACSLMKIRLIKVPVDPVTMKADVKATANAMSANTIMVYTSAPSFPHGVIDPVEKLAQLATRYGCGLHVDCCLGGFVLPFAKSLGYSVEPFDFGVEGVTSISADTHKYGYAPKGTSVALFRNKELRHQSYFCFPEWTGGLYVTPTIAGSRPGGLSAACWASMVGMGRNGYEKAVTGIMEMVKASAQ----ISLLLDAKHSQAMVVCFRGDDGVNIYKVGDRMSHRGWSLNALQHPPCLHLCVTMCHVGKAGVFLEDLLASTLEAAAAAGEGDENSTAAIYGMASSMPAGPENSVI 418
[Close]
BLAST of mRNA_C-linearis_contig106.994.1 vs. uniprot
Match: A0A0P1AR24_PLAHL (Sphingosine-1-phosphate lyase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AR24_PLAHL)

HSP 1 Score: 528 bits (1359), Expect = 6.700e-175
Identity = 264/478 (55.23%), Postives = 342/478 (71.55%), Query Frame = 2 
Query:  602 VRQLPAVARLLQKEVAKTEAHLQATLRPNL---ADRENLRALPAEGKQGGHVLVEMMLLAQRERSKWDAGKASGAVYSNDEEQSQTVTEAYRLFSRSNPLHPDLWPSGLKFEAEVISMTARLLDGGDDGVCGVLTSGGTESIVLSAKAHRDFYRER-GVTSPEIVAATTAHAAIDKACSLMNIRLIKVPVDPATMKADVRATARAMSANTIMVYASAPSFPHGVIDPVEDLAKLAASYGCGLHVDCCLGGFVLPFAKSLGYPIPPFDFVVAGVTSISADTHKYGYAPKGTSVALFRTKELRHQAYFCFPEWTGGLYVTPTIAGSRPGGLSAACWASMVSMGRNGYERAVQGIMETAQAIAQGVRGISGLSLVGDPRSMVVCFRGDKGVNIYKVGDRMSHRGWSLNALQHPPCLHLCVTMCHVGKAAEFLTDLLTSTLEAGATAGEGDENSTAAIYGMASSMPAGPVNVLLRAYTDVTL 2023
            ++QLP VA  +  E+ K E  ++ +L+ N       E L +LP +G     +LV M  LA     KW  G  SGAVY  ++E    + +A  LF+ SNPLH DLWP+  KFEAEVI+MTA L++GG   VCG LTSGGTESI L+AK HR++YR++ G+TSPEI+A  TAHAAIDKAC ++ IRLIKVP+D  ++K D+ A   ++SANTIM+Y+SAP+FPHG+ID +E L++LA  Y  GLHVDCCLGGFVLPFA+ L   IP +DF + GVTS+S DTHKYGY  KGTSV L++  ++R   YF +P+WTGGLY TPT+AGSRPG LSAA WASMV +GR GY +  +GI++T   I  G++ I G+ ++GDP++MVV F GD+GVN  KVGD M+ RGWSLN+LQHP C+HLCVT+CH+GKA +FL+ L  +  E         E  +A IYGMASS+PAGPV+ LLR YTD+TL
Sbjct:  129 LKQLPVVANKVASEMLKIEKEVELSLKGNSPLEGKMEKLYSLPDQGMDDKKLLVLMKDLAGNSDDKWKDGLVSGAVYHGEKEHLDVLNQASGLFAVSNPLHADLWPAVTKFEAEVIAMTAELMNGGHSEVCGTLTSGGTESIFLAAKTHREYYRQKHGITSPEIIACVTAHAAIDKACEILGIRLIKVPMDSKSLKIDLNAVRWSISANTIMLYSSAPNFPHGIIDDIEGLSRLAVQYDVGLHVDCCLGGFVLPFARQLRQDIPVYDFALPGVTSMSCDTHKYGYGSKGTSVVLYKNSDIRRFQYFSYPDWTGGLYATPTLAGSRPGALSAAAWASMVRLGREGYIQKTKGIIDTVDDIKAGIQRIEGIHVLGDPKAMVVSFAGDEGVNALKVGDAMAKRGWSLNSLQHPTCVHLCVTVCHIGKANKFLSALKEAVNEVKQDPNPSPEGGSA-IYGMASSLPAGPVDDLLRIYTDITL 605
[Close]
BLAST of mRNA_C-linearis_contig106.994.1 vs. uniprot
Match: A0A6G0XVT3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVT3_9STRA)

HSP 1 Score: 517 bits (1331), Expect = 8.370e-171
Identity = 279/567 (49.21%), Postives = 367/567 (64.73%), Query Frame = 2 
Query:  341 LAILLLRAYRDGPSGEKHTATHVSFLEELLGAVRAAVPAGPRLLFVEDALAVILVAAVWRALVKLWRIATSPVAEKKAF--VTDRGFAMVRQLPAVARLLQKEVAKTEAHLQATLRPNLADRENLR---ALPAEGKQGGHVLVEMMLLAQRERSKWDAGKASGAVYSNDEEQSQTVTEAYRLFSRSNPLHPDLWPSGLKFEAEVISMTARLLDGGDDGVCGVLTSGGTESIVLSAKAHRDFYR-ERGVTSPEIVAATTAHAAIDKACSLMNIRLIKVPVDPATMKADVRATARAMSANTIMVYASAPSFPHGVIDPVEDLAKLAASYGCGLHVDCCLGGFVLPFAKSLGYPIPPFDFVVAGVTSISADTHKYGYAPKGTSVALFRTKELRHQAYFCFPEWTGGLYVTPTIAGSRPGGLSAACWASMVSMGRNGYERAVQGIMETAQAIAQGVRGISGLSLVGDPRSMVVCFRGDKGVNIYKVGDRMSHRGWSLNALQHPPCLHLCVTMCHVGKAAEFLTDLLTSTLEAGATAGEGDENSTAAIYGMASSMPAGPVNVLLRAYTDVTL 2023
            LA L   A+R     ++H     S L+ +L A     P     L   DAL +  +   + A++   R A    ++KK    V     +++++LP ++   +KE+ K +  ++ +L+ +           ALP EG+    ++  M  + + E  +W  G  SGAVY  ++E    + +AY LF+ +NPLH DLWPS ++ EAEV+SMTA  L+GG+ GVCG ++SGGTESI+L+ K HRD++R E G+T PEI+AA TAHAAIDKAC ++ IRLIKVPVDP T K DV A    ++ANTIM+Y+SAP+FP G ID +  L+KLA +YG GLHVDCCLGGFVLPFAK+LGYPIP FDF + GVTS+S DTHKYGYA KGTSV L+++KE+R   YF + +WTGGLY TPT AGSRPG LSAACWASM+ MGR GY    +GIMET   I  G++ I GL L+GD  +MV+CF G K  N+ KV D ++  GWSLNALQHP  +HLCVT   +GK AE L  +L   +        G     +A+YGMASSMPAGPV  +LR Y D TL
Sbjct:   40 LAALAFLAFRALEQEKRHQ----SLLDLVLNAGSKYAPLAT--LLAGDALVLFALFQAYTAILSALRRARYGFSKKKTLNVVGQVAISIIQRLPILSSTYRKEIQKIQVDIETSLKEHAKSEAEFPKNFALPEEGQSPEAIIKTMQAMVKGEDDRWKDGLVSGAVYHGEQEHVDLLNKAYGLFNVTNPLHADLWPSVVRMEAEVVSMTASFLNGGNTGVCGAISSGGTESIILATKTHRDWFRAEHGITKPEIIAAVTAHAAIDKACDVLGIRLIKVPVDPVTFKVDVAAVKWNITANTIMIYSSAPNFPQGTIDDITALSKLATTYGIGLHVDCCLGGFVLPFAKALGYPIPEFDFSLPGVTSMSCDTHKYGYASKGTSVVLYKSKEIRRYQYFAYSDWTGGLYATPTFAGSRPGALSAACWASMIRMGRKGYLEKTRGIMETVAEIKAGIQSIDGLYLLGDTPAMVICF-GSKEFNVLKVSDHLTKAGWSLNALQHPTSVHLCVTCRQIGKGAE-LVKVLREAVAVVKKDPNGKLEGGSAMYGMASSMPAGPVEDILRIYQDCTL 598
[Close]
BLAST of mRNA_C-linearis_contig106.994.1 vs. uniprot
Match: A0A484DSV6_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSV6_BRELC)

HSP 1 Score: 515 bits (1327), Expect = 4.190e-170
Identity = 274/526 (52.09%), Postives = 363/526 (69.01%), Query Frame = 2 
Query:  476 VEDALAVILVAAVWRALVKLWRIATSPVAEKKAFVTDRGFAM--VRQLPAVARLLQKEVAKTEAHLQATLRPN---LADRENLRALPAEGKQGGHVLVEMMLLAQRERSKWDAGKASGAVYSNDEEQSQTVTEAYRLFSRSNPLHPDLWPSGLKFEAEVISMTARLLDGGDDGVCGVLTSGGTESIVLSAKAHRDFYRER-GVTSPEIVAATTAHAAIDKACSLMNIRLIKVPVDPATMKADVRATARAMSANTIMVYASAPSFPHGVIDPVEDLAKLAASYGCGLHVDCCLGGFVLPFAKSLGYPIPPFDFVVAGVTSISADTHKYGYAPKGTSVALFRTKELRHQAYFCFPEWTGGLYVTPTIAGSRPGGLSAACWASMVSMGRNGYERAVQGIMETAQAIAQGVRGISGLSLVGDPRSMVVCFRGDKGVNIYKVGDRMSHRGWSLNALQHPPCLHLCVTMCHVGKAAEFLTDLLTSTLEAGATAGEGDENST----AAIYGMASSMPAGPVNVLLRAYTDVTL 2023
            V D L +I + +++ A V+L R A   V+ K  F    G A+  ++QLP  +  +  E+ K E+ ++  L+ N    A  E L ALPA+G     ++  +  LA    +KW  G  SGAVY  ++E    + +AY L++ +NPLH DLWP   KFEAEVI+MTA LL+GG   VCG LTSGGTESI L+AKAHR +YR++ G+T+PEI+A  TAHAAIDKAC ++ IRLIKVP+D  ++K D+ A    +SANTI++Y+SAP+FPHG+ID +  L++LA     GLHVDCCLGGFVLPFA+ L   IP FDF + GVTSIS DTHKYGY  KGTSV L++T ELR   YF +P+WTGGLYVTPT+AGSR G LSAA WASMV +GR G+    +GI++T   I  G++ I G+ L+GDP  MVVCF GDKG+N  +VG+ M+ RGWSLN+LQHP  +HLCVT+CH+GK+ +F+     S LE      + D N++    +AIYGMASS+PAGPV+ +LR YTD++L
Sbjct:   86 VSDTLLLISIISIFSASVQLVRRARY-VSRKSLFNAVGGAAVKALKQLPIASVKMANEMRKIESEVEHMLKGNDSLAAKMEKLHALPAQGMDDNKLVALLTNLAGNSDNKWKDGFVSGAVYHGEKEHLDVLNKAYALYAVTNPLHADLWPVVNKFEAEVIAMTASLLNGGHPEVCGTLTSGGTESIFLAAKAHRAYYRQKHGITTPEIIACVTAHAAIDKACEILGIRLIKVPMDSQSLKMDLHAVRWNISANTILLYSSAPNFPHGIIDDIAALSQLAVQNDVGLHVDCCLGGFVLPFARQLRTTIPVFDFALPGVTSISCDTHKYGYGSKGTSVVLYKTSELRRFQYFSYPDWTGGLYVTPTLAGSRSGALSAAAWASMVRLGREGFLEKTKGILDTVDEIKTGIQRIDGIHLLGDPLVMVVCFAGDKGINALRVGNAMAKRGWSLNSLQHPTSVHLCVTVCHIGKSQKFV-----SALEEAVNEVKQDPNASLEGGSAIYGMASSLPAGPVDDILRIYTDISL 605
[Close]
BLAST of mRNA_C-linearis_contig106.994.1 vs. uniprot
Match: A0A225X338_9STRA (Sphingosine-1-phosphate lyase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X338_9STRA)

HSP 1 Score: 514 bits (1324), Expect = 1.030e-169
Identity = 263/477 (55.14%), Postives = 336/477 (70.44%), Query Frame = 2 
Query:  602 VRQLPAVARLLQKEVAKTEAHLQATLRPN--LADRENLRALPAEGKQGGHVLVEMMLLAQRERSKWDAGKASGAVYSNDEEQSQTVTEAYRLFSRSNPLHPDLWPSGLKFEAEVISMTARLLDGGDDGVCGVLTSGGTESIVLSAKAHRDFYRER-GVTSPEIVAATTAHAAIDKACSLMNIRLIKVPVDPATMKADVRATARAMSANTIMVYASAPSFPHGVIDPVEDLAKLAASYGCGLHVDCCLGGFVLPFAKSLGYPIPPFDFVVAGVTSISADTHKYGYAPKGTSVALFRTKELRHQAYFCFPEWTGGLYVTPTIAGSRPGGLSAACWASMVSMGRNGYERAVQGIMETAQAIAQGVRGISGLSLVGDPRSMVVCFRGDKGVNIYKVGDRMSHRGWSLNALQHPPCLHLCVTMCHVGKAAEFLTDLLTSTLEAGATAGEGDENSTAAIYGMASSMPAGPVNVLLRAYTDVTL 2023
            ++QLP V+  +  E+ K E  ++ +L+ N   AD+E LRALP +G     +L  M  LA     KW  G  SGAVY  ++E    + +AY LF+ +NPLH DLWP+  KFEAEVI+MTA L++GG + VCG L+SGGTESI L+ K HR++YR + G+T PEIVA  TAHAAIDKAC ++ I+LIKVP+DP T+K D+ A   ++SANTIM+Y+SAP+FPHG+ID +E L+KLA     GLHVDCCLGGFVLPFA+ L   IP FDF + GVTS+S DTHKYGY  KGTSV L++  E+R   YF FP+WTGGLY TPT+AGSRPG LSAA WASMV +G  GY    +GI++T   I  G++ I G+ L+GDP++MVV F G KGVN  KV D M+  GWSL+ LQHP  +HLCVT+ H+GKA +FL+ L  +  E         E  +A IYGMASS+PAGPV+ LLR YTD+TL
Sbjct:  126 LKQLPVVSAKMADEMRKIEDEVEHSLKGNSPFADKEKLRALPDKGMDDQQLLRLMEDLAGNSDDKWRDGLVSGAVYHGEKEHLDVLNKAYALFAVTNPLHVDLWPAVNKFEAEVIAMTAGLMNGGHEEVCGTLSSGGTESIFLATKTHREYYRHKHGITKPEIVACVTAHAAIDKACEILGIKLIKVPMDPKTLKVDLNAVRWSISANTIMLYSSAPNFPHGMIDDIEALSKLAVQSDVGLHVDCCLGGFVLPFARELRQDIPVFDFSLPGVTSMSCDTHKYGYGSKGTSVVLYKNSEIRRFQYFSFPDWTGGLYATPTLAGSRPGALSAAAWASMVRLGHEGYLEKTKGILDTVDEIKAGIKRIDGIYLLGDPKAMVVSFAGTKGVNALKVSDMMAKHGWSLSPLQHPTSVHLCVTVRHIGKANKFLSALEEAVNEVKLDPNPAPEGGSA-IYGMASSLPAGPVDDLLRIYTDITL 601
[Close]
BLAST of mRNA_C-linearis_contig106.994.1 vs. uniprot
Match: W4H5N4_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H5N4_9STRA)

HSP 1 Score: 509 bits (1311), Expect = 8.850e-168
Identity = 265/482 (54.98%), Postives = 335/482 (69.50%), Query Frame = 2 
Query:  599 MVRQLPAVARLLQKEVAKTEAHLQATLRPNLADRENLR---ALPAEGKQGGHVLVEMMLLAQRERSKWDAGKASGAVYSNDEEQSQTVTEAYRLFSRSNPLHPDLWPSGLKFEAEVISMTARLLDGGDDGVCGVLTSGGTESIVLSAKAHRDFYR-ERGVTSPEIVAATTAHAAIDKACSLMNIRLIKVPVDPATMKADVRATARAMSANTIMVYASAPSFPHGVIDPVEDLAKLAASYGCGLHVDCCLGGFVLPFAKSLGYP-IPPFDFVVAGVTSISADTHKYGYAPKGTSVALFRTKELRHQAYFCFPEWTGGLYVTPTIAGSRPGGLSAACWASMVSMGRNGYERAVQGIMETAQAIAQGVRGISGLSLVGDPRSMVVCFRGDKGVNIYKVGDRMSHRGWSLNALQHPPCLHLCVTMCHVGKAAEFLTDL--LTSTLEAGATAGEGDENSTAAIYGMASSMPAGPVNVLLRAYTDVTL 2023
            +++++P +A   +KE+ K E  ++++L+ +    E       LP EGK    VL  M  +A+ E  +W  G  SGAVY  D++    + +AY LF+ +NPLH DLWPS ++ EAEVISMTA  L+GG+  VCG LTSGGTESIVL+ K HRD++R + G+T PEI+AA TAHAAIDKAC +  IRLIKVPVDP T + DV A    +SANTI++YASAPSFP G ID VE L+KLA +YG GLHVDCCLGGFVLPFAK LGYP IP FDF + GVTS+S DTHKYGYA KGTS+ L+++K +R   YF + +WTGGLY TPTIAGSRPG LSAACWA+M+ MGR GY    +GIMET + I  G+  I  L L+G   +MVVCF G +  NI KV D ++  GWSLNALQHP C+HLCVT   +GK  +F+  L    + ++   T   G  +  +A+YGMASSMPAGPV  +LR Y D TL
Sbjct:  123 ILQRIPFLASKYRKEIRKMEVQIESSLQEHAKSAEEFPKQFTLPEEGKANAAVLATMQAMAKGEDKRWKDGLVSGAVYHGDDDHVALLNQAYGLFNVTNPLHADLWPSVVRMEAEVISMTASFLNGGNTDVCGALTSGGTESIVLATKTHRDWFRHDHGITRPEIIAAVTAHAAIDKACDMFGIRLIKVPVDPVTFQIDVAAVKWNISANTILIYASAPSFPQGTIDDVEALSKLAVTYGIGLHVDCCLGGFVLPFAKELGYPDIPSFDFSLPGVTSMSCDTHKYGYASKGTSIVLYKSKAIRRFQYFAYSDWTGGLYATPTIAGSRPGALSAACWAAMMRMGRRGYLEKTRGIMETVKVIKAGIASIDELHLLGAGAAMVVCF-GSREFNILKVSDHLTTLGWSLNALQHPTCVHLCVTCRQIGKGDQFVKALKEAVAVVKKDPT---GKLDGGSAMYGMASSMPAGPVEDILRIYQDCTL 600
[Close]
BLAST of mRNA_C-linearis_contig106.994.1 vs. uniprot
Match: V9FCN8_PHYPR (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=V9FCN8_PHYPR)

HSP 1 Score: 509 bits (1311), Expect = 1.040e-167
Identity = 261/482 (54.15%), Postives = 337/482 (69.92%), Query Frame = 2 
Query:  602 VRQLPAVARLLQKEVAKTEAHLQATLRPN---LADRENLRALPAEGKQGGHVLVEMMLLAQRERSKWDAGKASGAVYSNDEEQSQTVTEAYRLFSRSNPLHPDLWPSGLKFEAEVISMTARLLDGGDDGVCGVLTSGGTESIVLSAKAHRDFYRER-GVTSPEIVAATTAHAAIDKACSLMNIRLIKVPVDPATMKADVRATARAMSANTIMVYASAPSFPHGVIDPVEDLAKLAASYGCGLHVDCCLGGFVLPFAKSLGYPIPPFDFVVAGVTSISADTHKYGYAPKGTSVALFRTKELRHQAYFCFPEWTGGLYVTPTIAGSRPGGLSAACWASMVSMGRNGYERAVQGIMETAQAIAQGVRGISGLSLVGDPRSMVVCFRGDKGVNIYKVGDRMSHRGWSLNALQHPPCLHLCVTMCHVGKAAEFLTDLLTSTLEAGATAGEGDENST----AAIYGMASSMPAGPVNVLLRAYTDVTL 2023
            ++QLP ++  +  E+ K E  ++ +L+ N    A  E LRALP +G     +L  M  LA     KW  G  SGAVY  ++E    + +AY LF+ +NPLH DLWP+  KFEAEVI+MTA +++GG   VCG L+SGGTESI L+ K HRD+YR + G+T+PEI+A  TAHAAIDKAC ++ IRLIKVP+DP T+K D+ A   ++SANTIM+Y+SAP+FPHG+ID +E L++LA     GLHVDCCLGGFVLPFA+ L   IP FDF + GVTS+S DTHKYGY  KGTSV L++  E+R   YF + +WTGGLY TPT+AGSRPG LSAA WASMV +GR GY    +GI++T   I  G++ I G+ L+GDP++MVV F GDKGVN  KV D M+  GWSL+ LQHP  +HLCVT+ H+GKA +FL     S LE      + D N +    +AIYGMASS+P+GPV+ LLR YTD+TL
Sbjct:  129 LKQLPIISTKVADEMRKIEGEVEHSLKGNDPLSAKMEKLRALPDKGMDDNKLLSLMEDLAGNSDDKWRDGLVSGAVYHGEKEHLDVLNKAYALFAVTNPLHADLWPAVNKFEAEVIAMTAGMMNGGHPEVCGTLSSGGTESIFLATKTHRDYYRHKHGITNPEIIACVTAHAAIDKACEILGIRLIKVPMDPKTLKVDLNAVRWSISANTIMLYSSAPNFPHGMIDDIEALSRLAVQNDVGLHVDCCLGGFVLPFARQLRKDIPVFDFALPGVTSMSCDTHKYGYGSKGTSVVLYKNPEIRRFQYFSYADWTGGLYATPTLAGSRPGALSAAAWASMVRLGREGYLEKTKGILDTVDEIKAGIKRIDGIHLLGDPKAMVVSFAGDKGVNALKVSDAMAKHGWSLSPLQHPTSVHLCVTVRHIGKAKKFL-----SALEEAVNQVKQDPNPSPEGGSAIYGMASSLPSGPVDDLLRIYTDITL 605
[Close]
BLAST of mRNA_C-linearis_contig106.994.1 vs. uniprot
Match: A0A6A3WPW8_9STRA (Sphingosine-1-phosphate lyase n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WPW8_9STRA)

HSP 1 Score: 508 bits (1307), Expect = 4.140e-167
Identity = 260/478 (54.39%), Postives = 336/478 (70.29%), Query Frame = 2 
Query:  602 VRQLPAVARLLQKEVAKTEAHLQATLRPN---LADRENLRALPAEGKQGGHVLVEMMLLAQRERSKWDAGKASGAVYSNDEEQSQTVTEAYRLFSRSNPLHPDLWPSGLKFEAEVISMTARLLDGGDDGVCGVLTSGGTESIVLSAKAHRDFYRER-GVTSPEIVAATTAHAAIDKACSLMNIRLIKVPVDPATMKADVRATARAMSANTIMVYASAPSFPHGVIDPVEDLAKLAASYGCGLHVDCCLGGFVLPFAKSLGYPIPPFDFVVAGVTSISADTHKYGYAPKGTSVALFRTKELRHQAYFCFPEWTGGLYVTPTIAGSRPGGLSAACWASMVSMGRNGYERAVQGIMETAQAIAQGVRGISGLSLVGDPRSMVVCFRGDKGVNIYKVGDRMSHRGWSLNALQHPPCLHLCVTMCHVGKAAEFLTDLLTSTLEAGATAGEGDENSTAAIYGMASSMPAGPVNVLLRAYTDVTL 2023
            +++LP V+  +  E+ K E+ ++ +L+ N    A  + LRALP +G     +L  M  LA     KW  G  SGAVY  ++E    + +AY LF+ +NPLH DLWP+  KFEAEVI+MTA L++GG + VCG L+SGGTESI L+ K HR++YR +  +T PEIVA  TAHAAIDKAC ++ I+LIKVP+DP T+K D+ A   ++SANTIM+Y+SAP+FPHG+ID +E L++LA     GLHVDCCLGGFVLPFA+ L   IP FDF + GVTS+S DTHKYGY  KGTSV L++  E+R   YF +P+WTGGLYVTPT+AGSRPG LSAA WASMV +G  GY    +GI+ET   I  G++ I G+ L+GDP++MVV F GDKGVN  KV D M+  GWSL+ LQHP  +HLCVT+ H+GKA +FL+ L  +  E         E  +A IYGMASS+PAGPV+ LLR YTD+TL
Sbjct:  129 LKRLPVVSAKMAAEMRKIESEVELSLKGNDPLAAKMDKLRALPEKGMDDEKLLRLMADLAGNSDDKWRDGYVSGAVYHGEKEHLDVLNKAYALFAVTNPLHADLWPAVNKFEAEVIAMTAGLMNGGHEEVCGTLSSGGTESIFLATKTHREYYRHKHNITKPEIVACVTAHAAIDKACEILGIKLIKVPMDPKTLKVDLDAVRWSISANTIMLYSSAPNFPHGMIDDIEALSRLAVQNDVGLHVDCCLGGFVLPFARKLRSDIPVFDFSLPGVTSMSCDTHKYGYGSKGTSVVLYKNAEIRRFQYFSYPDWTGGLYVTPTLAGSRPGALSAAAWASMVRLGYEGYLEKTKGILETVDEIKAGIQRIDGIYLLGDPKAMVVSFAGDKGVNALKVSDAMAKHGWSLSPLQHPTSVHLCVTVRHIGKAKKFLSALEEAVNEVKQDPNPSPEGGSA-IYGMASSLPAGPVDDLLRIYTDITL 605
[Close]
BLAST of mRNA_C-linearis_contig106.994.1 vs. uniprot
Match: A0A835YUB4_9STRA (Pyridoxal phosphate-dependent transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUB4_9STRA)

HSP 1 Score: 501 bits (1290), Expect = 4.640e-167
Identity = 251/435 (57.70%), Postives = 315/435 (72.41%), Query Frame = 2 
Query:  758 MMLLAQRERSKWDAGKASGAVYSNDEEQSQTVTEAYRLFSRSNPLHPDLWPSGLKFEAE--VISMTARLLDGGDDGVCGVLTSGGTESIVLSAKAHRDFYRERGVTSPEIVAATTAHAAIDKACSLMNIRLIKVPVDPATMKADVRATARAMSANTIMVYASAPSFPHGVIDPVEDLAKLAASYGCGLHVDCCLGGFVLPFAKSLGYP-------IPPFDFVVAGVTSISADTHKYGYAPKGTSVALFRTKELRHQAYFCFPEWTGGLYVTPTIAGSRPGGLSAACWASMVSMGRNGYERAVQGIMETAQAIAQGVRGISGLSLVGDPRSMVVCFRGDKGVNIYKVGDRMSHRGWSLNALQHPPCLHLCVTMCHVGKAAEFLTDLLTST------LEAGATAGEGDENSTAAIYGMASSMPAGPVNVLLRAYTDV 2017
            M   A +E  KW+ G+ SGAVY    +  Q + +AY LFS SNPLH D+WPS  ++EAE  +ISMTARLLDGGD  VCG L+SGGTESI+L+ K+H  +YR+ G+T+PE+VA  +AHAAI+KAC+LM I+LIKVP+DP T K  VRA  R++S NTIM+YASAPSFP G+IDP+  L+ LA  +GCGLHVDCCLGGF LPFA+            I PFDF V GVTS+S DTHKYGYA KGTSV L+R+KELR Q YFC+P+WTGGLYVTPT+AGSRPGGL AACWASMVS+G  GY + V+ I+E    +A+GV     L ++GDP++M+VCF G K +NIY+VGD M+ +GWSLNALQ+P CLHLC+T+       +FL DL  S         A A +G  DE  TAA+YGMA S+P+GP+  ++  Y DV
Sbjct:    1 MSAAAAKEDGKWENGRVSGAVYHGGRQHMQLLDQAYSLFSLSNPLHTDIWPSVTQYEAEGELISMTARLLDGGDANVCGSLSSGGTESIILATKSHLQYYRQHGITAPEVVACVSAHAAIEKACALMGIKLIKVPMDPKTYKVSVRAIRRSLSVNTIMIYASAPSFPQGIIDPIAQLSDLALRHGCGLHVDCCLGGFFLPFARRAAAAGAAWAPAIEPFDFGVPGVTSMSCDTHKYGYASKGTSVVLYRSKELRAQQYFCYPDWTGGLYVTPTLAGSRPGGLVAACWASMVSLGEEGYSQGVEAIVEARHKVAKGVADTPDLFVLGDPQAMIVCF-GSKTLNIYRVGDAMTAKGWSLNALQNPACLHLCLTLRTANNTQQFLQDLNESAEIARKEQLAAAASGAKDEG-TAAMYGMAGSLPSGPLRAIMTTYADV 433
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSQ5_ECTSI0.000e+076.18Pyridoxal-dependent decarboxylase n=1 Tax=Ectocarp... [more]
A0A6H5JHB1_9PHAE3.430e-24885.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0P1AR24_PLAHL6.700e-17555.23Sphingosine-1-phosphate lyase n=1 Tax=Plasmopara h... [more]
A0A6G0XVT3_9STRA8.370e-17149.21Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A484DSV6_BRELC4.190e-17052.09Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A225X338_9STRA1.030e-16955.14Sphingosine-1-phosphate lyase n=1 Tax=Phytophthora... [more]
W4H5N4_9STRA8.850e-16854.98Uncharacterized protein n=8 Tax=Aphanomyces astaci... [more]
V9FCN8_PHYPR1.040e-16754.15Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
A0A6A3WPW8_9STRA4.140e-16754.39Sphingosine-1-phosphate lyase n=7 Tax=Phytophthora... [more]
A0A835YUB4_9STRA4.640e-16757.70Pyridoxal phosphate-dependent transferase n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:353204..363978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score948.0
Seed ortholog evalue2.3e-273
Seed eggNOG ortholog2880.D7FSQ5
Preferred nameSGPL1
KEGG rclassRC00264,RC00721,RC01266
KEGG koko:K01634,ko:K20704
KEGG ReactionR02464,R06516
KEGG Pathwayko00600,ko01100,ko04071,map00600,map01100,map04071
KEGG ModuleM00100
Hectar predicted targeting categorysignal anchor
GOsGO:0000003,GO:0001501,GO:0001553,GO:0001568,GO:0001570,GO:0001655,GO:0001667,GO:0001822,GO:0001944,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005938,GO:0006082,GO:0006629,GO:0006631,GO:0006643,GO:0006665,GO:0006672,GO:0006807,GO:0006873,GO:0006874,GO:0006875,GO:0006915,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006996,GO:0007010,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007283,GO:0007525,GO:0007527,GO:0007548,GO:0008064,GO:0008117,GO:0008150,GO:0008152,GO:0008202,GO:0008209,GO:0008210,GO:0008219,GO:0008406,GO:0008584,GO:0008585,GO:0008610,GO:0009056,GO:0009058,GO:0009267,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009791,GO:0009887,GO:0009987,GO:0009991,GO:0010171,GO:0010646,GO:0010761,GO:0010817,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016477,GO:0016829,GO:0016830,GO:0016832,GO:0019722,GO:0019725,GO:0019752,GO:0019932,GO:0019953,GO:0022414,GO:0022602,GO:0023052,GO:0030003,GO:0030029,GO:0030036,GO:0030097,GO:0030148,GO:0030149,GO:0030154,GO:0030176,GO:0030435,GO:0030587,GO:0030832,GO:0030833,GO:0031156,GO:0031157,GO:0031158,GO:0031224,GO:0031227,GO:0031272,GO:0031273,GO:0031275,GO:0031276,GO:0031344,GO:0031345,GO:0031667,GO:0031668,GO:0031669,GO:0031984,GO:0032101,GO:0032104,GO:0032107,GO:0032271,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032541,GO:0032787,GO:0032956,GO:0032970,GO:0033043,GO:0033327,GO:0033554,GO:0034641,GO:0034754,GO:0035239,GO:0035295,GO:0035556,GO:0040008,GO:0040011,GO:0040014,GO:0042175,GO:0042221,GO:0042330,GO:0042331,GO:0042445,GO:0042592,GO:0042594,GO:0042698,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043436,GO:0043603,GO:0043900,GO:0043934,GO:0044087,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044703,GO:0045137,GO:0046466,GO:0046467,GO:0046545,GO:0046546,GO:0046660,GO:0046661,GO:0046956,GO:0048008,GO:0048232,GO:0048471,GO:0048511,GO:0048513,GO:0048514,GO:0048519,GO:0048523,GO:0048534,GO:0048583,GO:0048608,GO:0048609,GO:0048638,GO:0048646,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050830,GO:0050896,GO:0051128,GO:0051129,GO:0051179,GO:0051239,GO:0051493,GO:0051674,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0052128,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060021,GO:0060176,GO:0060322,GO:0060323,GO:0060324,GO:0060325,GO:0060491,GO:0061061,GO:0061458,GO:0065007,GO:0065008,GO:0071496,GO:0071704,GO:0071782,GO:0071840,GO:0071944,GO:0072001,GO:0072358,GO:0072359,GO:0072503,GO:0072507,GO:0080134,GO:0080135,GO:0090066,GO:0090702,GO:0097038,GO:0097190,GO:0098542,GO:0098771,GO:0098827,GO:0099120,GO:0099568,GO:0110053,GO:0120032,GO:0120033,GO:0120035,GO:1901360,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1902903
EggNOG free text desc.sphinganine-1-phosphate aldolase activity
EggNOG OGsCOG0076@1,KOG1383@2759
Ec32 ortholog descriptionPyridoxal-dependent decarboxylase
Ec32 orthologEc-03_002920.1
EC4.1.2.27
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Exons16
Model size2603
Cds size1929
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.994.1prot_C-linearis_contig106.994.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig106 353775..363875 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927401.7388694-UTR-C-linearis_contig106:353203..3537741622927401.7388694-UTR-C-linearis_contig106:353203..353774Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 353204..353774 -
1690879679.7963812-UTR-C-linearis_contig106:353203..3537741690879679.7963812-UTR-C-linearis_contig106:353203..353774Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 353204..353774 -
1622927401.9145427-UTR-C-linearis_contig106:363875..3639781622927401.9145427-UTR-C-linearis_contig106:363875..363978Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 363876..363978 -
1690879679.9672737-UTR-C-linearis_contig106:363875..3639781690879679.9672737-UTR-C-linearis_contig106:363875..363978Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 363876..363978 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927401.749262-CDS-C-linearis_contig106:353774..3538821622927401.749262-CDS-C-linearis_contig106:353774..353882Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 353775..353882 -
1690879679.8102117-CDS-C-linearis_contig106:353774..3538821690879679.8102117-CDS-C-linearis_contig106:353774..353882Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 353775..353882 -
1622927401.7609353-CDS-C-linearis_contig106:354214..3543701622927401.7609353-CDS-C-linearis_contig106:354214..354370Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 354215..354370 -
1690879679.8196816-CDS-C-linearis_contig106:354214..3543701690879679.8196816-CDS-C-linearis_contig106:354214..354370Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 354215..354370 -
1622927401.7737937-CDS-C-linearis_contig106:354687..3547911622927401.7737937-CDS-C-linearis_contig106:354687..354791Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 354688..354791 -
1690879679.8286393-CDS-C-linearis_contig106:354687..3547911690879679.8286393-CDS-C-linearis_contig106:354687..354791Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 354688..354791 -
1622927401.7828462-CDS-C-linearis_contig106:355431..3554951622927401.7828462-CDS-C-linearis_contig106:355431..355495Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 355432..355495 -
1690879679.8379996-CDS-C-linearis_contig106:355431..3554951690879679.8379996-CDS-C-linearis_contig106:355431..355495Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 355432..355495 -
1622927401.7942014-CDS-C-linearis_contig106:355976..3560901622927401.7942014-CDS-C-linearis_contig106:355976..356090Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 355977..356090 -
1690879679.846599-CDS-C-linearis_contig106:355976..3560901690879679.846599-CDS-C-linearis_contig106:355976..356090Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 355977..356090 -
1622927401.806505-CDS-C-linearis_contig106:356730..3569101622927401.806505-CDS-C-linearis_contig106:356730..356910Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 356731..356910 -
1690879679.8548002-CDS-C-linearis_contig106:356730..3569101690879679.8548002-CDS-C-linearis_contig106:356730..356910Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 356731..356910 -
1622927401.815507-CDS-C-linearis_contig106:357331..3574871622927401.815507-CDS-C-linearis_contig106:357331..357487Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 357332..357487 -
1690879679.8647153-CDS-C-linearis_contig106:357331..3574871690879679.8647153-CDS-C-linearis_contig106:357331..357487Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 357332..357487 -
1622927401.825884-CDS-C-linearis_contig106:357700..3577931622927401.825884-CDS-C-linearis_contig106:357700..357793Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 357701..357793 -
1690879679.8746476-CDS-C-linearis_contig106:357700..3577931690879679.8746476-CDS-C-linearis_contig106:357700..357793Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 357701..357793 -
1622927401.8381643-CDS-C-linearis_contig106:358322..3584451622927401.8381643-CDS-C-linearis_contig106:358322..358445Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 358323..358445 -
1690879679.8834112-CDS-C-linearis_contig106:358322..3584451690879679.8834112-CDS-C-linearis_contig106:358322..358445Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 358323..358445 -
1622927401.848233-CDS-C-linearis_contig106:358945..3591221622927401.848233-CDS-C-linearis_contig106:358945..359122Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 358946..359122 -
1690879679.8921683-CDS-C-linearis_contig106:358945..3591221690879679.8921683-CDS-C-linearis_contig106:358945..359122Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 358946..359122 -
1622927401.8594368-CDS-C-linearis_contig106:359452..3595661622927401.8594368-CDS-C-linearis_contig106:359452..359566Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 359453..359566 -
1690879679.9021597-CDS-C-linearis_contig106:359452..3595661690879679.9021597-CDS-C-linearis_contig106:359452..359566Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 359453..359566 -
1622927401.8682144-CDS-C-linearis_contig106:359967..3600391622927401.8682144-CDS-C-linearis_contig106:359967..360039Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 359968..360039 -
1690879679.9125755-CDS-C-linearis_contig106:359967..3600391690879679.9125755-CDS-C-linearis_contig106:359967..360039Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 359968..360039 -
1622927401.8766148-CDS-C-linearis_contig106:360555..3606331622927401.8766148-CDS-C-linearis_contig106:360555..360633Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 360556..360633 -
1690879679.9244337-CDS-C-linearis_contig106:360555..3606331690879679.9244337-CDS-C-linearis_contig106:360555..360633Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 360556..360633 -
1622927401.8847983-CDS-C-linearis_contig106:361042..3611741622927401.8847983-CDS-C-linearis_contig106:361042..361174Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 361043..361174 -
1690879679.934035-CDS-C-linearis_contig106:361042..3611741690879679.934035-CDS-C-linearis_contig106:361042..361174Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 361043..361174 -
1622927401.8936822-CDS-C-linearis_contig106:361651..3617621622927401.8936822-CDS-C-linearis_contig106:361651..361762Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 361652..361762 -
1690879679.943764-CDS-C-linearis_contig106:361651..3617621690879679.943764-CDS-C-linearis_contig106:361651..361762Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 361652..361762 -
1622927401.9041948-CDS-C-linearis_contig106:363728..3638751622927401.9041948-CDS-C-linearis_contig106:363728..363875Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 363729..363875 -
1690879679.954928-CDS-C-linearis_contig106:363728..3638751690879679.954928-CDS-C-linearis_contig106:363728..363875Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 363729..363875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig106.994.1

>prot_C-linearis_contig106.994.1 ID=prot_C-linearis_contig106.994.1|Name=mRNA_C-linearis_contig106.994.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=643bp
MPLADENGFSLGAVSLGNIDLRACVSSRGLTAVATGFLGTWFLLSYVHQA
VGKSGSPWVHPRIARPIRRVRGALVAGILLAILLLRAYRDGPSGEKHTAT
HVSFLEELLGAVRAAVPAGPRLLFVEDALAVILVAAVWRALVKLWRIATS
PVAEKKAFVTDRGFAMVRQLPAVARLLQKEVAKTEAHLQATLRPNLADRE
NLRALPAEGKQGGHVLVEMMLLAQRERSKWDAGKASGAVYSNDEEQSQTV
TEAYRLFSRSNPLHPDLWPSGLKFEAEVISMTARLLDGGDDGVCGVLTSG
GTESIVLSAKAHRDFYRERGVTSPEIVAATTAHAAIDKACSLMNIRLIKV
PVDPATMKADVRATARAMSANTIMVYASAPSFPHGVIDPVEDLAKLAASY
GCGLHVDCCLGGFVLPFAKSLGYPIPPFDFVVAGVTSISADTHKYGYAPK
GTSVALFRTKELRHQAYFCFPEWTGGLYVTPTIAGSRPGGLSAACWASMV
SMGRNGYERAVQGIMETAQAIAQGVRGISGLSLVGDPRSMVVCFRGDKGV
NIYKVGDRMSHRGWSLNALQHPPCLHLCVTMCHVGKAAEFLTDLLTSTLE
AGATAGEGDENSTAAIYGMASSMPAGPVNVLLRAYTDVTLGS*
back to top

mRNA from alignment at C-linearis_contig106:353204..363978-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig106.994.1 ID=mRNA_C-linearis_contig106.994.1|Name=mRNA_C-linearis_contig106.994.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=10775bp|location=Sequence derived from alignment at C-linearis_contig106:353204..363978- (Chordaria linearis ClinC8C monoicous)
GTTTGCATGCCCTTCATCAGCGTCCAGCACGTCGGTTAGACGCAGGTGCT
GGGGTACCAACGCCATTGGGTATCCTCGTTCTCTTTCTCTGTTAAGTTTA
CTCATGCCTTTGGCTGATGAGAATGGATTCTCTCTCGGAGCGGTGTCTCT
CGGAAACATCGATCTGCGAGCATGCGTCAGCAGCCGAGGACTAACTGCGG
TGGCAACGGGGTTCCTGGGCACGTGGTTTCTTTTGTCGTACGTACACCAG
GTAGGCGCGCGCGTGCTCAAATGTCGTCACTTGACATGTTTTTCCATGAA
AATTATTTTTCGTTGTTATTGAGCGAGGAGATGCGCCGCGTTTTCTCGCA
GACCCCAATCAGAACTCTGCTGCTCTCTGTTGACGACGTGACCGGCTGCT
ACCTTCTCTACGCGAAACCTTTTCTCCATGCCAGTTGTTTAACAGTAGGA
GCCAGTGACAGAACCGCGGTGATGACATTAAATGGGTCTGACCACGTCGT
TCCTATCTGGCCGATCTGGATTCGGAACGGGCGTATCTACCGTAATCGTC
GGTGTCGAGGGGATTTTTTTTTTTGTGAATGCACACCTTTTTCTTCCTTT
TTTTCCTTTTCCTGTTTCCGCTCCCTACCGTTGTCTTGGATCTGTGTTGC
ACTTCGAAGGACGGGGATACATCGATAGCACGGGACATATTTCCCTTTCC
CCGTGCCATGTCTGCATGTCTGCGTTTTATAATCGGGGTGGAGGACTCGA
TTTGTCTGTCTGGCCGGCGTGTAGGGGTACTCAAGATAGGACCCGCTGGG
CCGCTGGGGGCGATGTGTACCCCCGGGATTGGTGATTTTAATATCTCCAG
TTTTATTTTATTTTATTTTTACCTCGCATAGCGTGCAGAGGGGAGCGGAG
GGCTCCAGACTAATTGTTTTGATTTTGTCTTGATTTTATCGCTCTGCTGA
CTCTTCGGGTCCATTTTATTTTTAGTACAATACCTGGTGTACCTTTTTAG
GGTAAGGTAACCTGTGACGACGGAAAATGGCCGTGTCTGCTCGATCAATA
CGGACAAAGGGGGGGTACTGGATGGAGAGAGACGGGATGGTTCTTAATGT
GAAGAAAACAACAACAACAACAACATCCCCCTGGGGGGAGATGAACAACA
TGGGGGGGATCTTTTTTTTTTTCAACGGTACCCGGGGGGGAATTCTACCC
GGGGGAGCCAAGAACACACACACAGCACCTTGTACGCACACACCTCTTGG
CTGTAAGCACTATGGACAAGATACACGAGCAGCAGTTCCGGAAGAAGAGG
AAGGAGGGCAGTTCGTGCGGATGCTTGGCCCCTTCCGGTGGGGGTGAACC
CTCCGACAAAAAAAATGAAAGGCCCGCCTCTCAGAGCTTATCGATAACGT
GGCTGGGCAAGGAATAGTCTACAGCATTTATTTATTTGTTTGCTCTTGAT
CTTCTAGTTAGATAGTAATCTCATAGTCGCAGATTAATAATTAGTTTGGT
TTGGGACTTGAAAGTCCTTTGCGCTCGTTGGTGGCTCTGTTCGTGTGGGT
AGTATGACGCGTTTCTTCAATTCGTTTGTCGGGCAATGCGCGGACGTTGG
GTTGTTGAAGTGATATTTAGCGGTGACAAAAATACACATATTTTACCTAT
CCGATTCCACTTTATCATCACAGCCTTTTCCGCGATGGCAGTTCATGGCG
GTGGATGCAATTGTGTACCCCGAATTTGACCCTGAAAAGTGTGGGAATTC
GTATCACCCCGGGGGGATCTCACAAGAAAACAACAACCCCGGGGGGAAGA
CGAAAAAGGGGGGGGGAGGTTCTCGAAAATAACGATCCCCCCCCTGGGGG
GAAACAACGAAATCATGCTTCCAGGCCGAAAAGGTGACCCCCGGGGGGTT
GGCTCTTCGGGGGGAGGGGATTGACACCGACGATTTCGGTATATATGTTT
TCATCCCCAAATTTCGAAGCCCCAAGCAAAAGCTGCCACCCACCCTACTA
GGAGCCTCCTCAGCTTGGTTATGTCCGCCGTCACACTCGCACTTTGTTCA
GAATCCAGTCACCTACTAGTGGACATGCACGGCAAATCTATCCATGGACT
TTCTTTTAGTACCCCTGAGAACAATCATCATATGACACCCCGCCTCCTTA
CGCATTCGCATACTGTTTCTATGCCGGCCGGTTGACCCCGCCACCGGGAC
ATTCTTGTTCCCGCAGGCGGTCGGGAAATCGGGGTCGCCTTGGGTTCATC
CCCGCATCGCCCGCCCCATCCGCCGGGTTCGCGGAGCACTGGTCGCGGGA
ATCTTGCTCGCCATCTTGCTGCTGCGGGTGAGAGACAGCTCATGGTATGC
ACCAGTACACGAGAAAGGCGCTTCGATGACGAAGAAAGAAGGCGTCGCCG
AACGGTTTATTGTTTGAAGTGGCAAATCGAAGCATGGACCGGTATTCGAA
GCGCCTTGAATGGGGGTACGCAACGCTGCTGCTGGTGATTTGGTTTTCTG
GGCGCATGAGGGCTACTGCACACGTGGTGGGCTTACGTTGTTTTTTTTGG
CGGGCAGTCAAAGTCCTGTTTTTATGCATCTTTGTTCTGTGACACCCTTT
CTCGAACAAACGGCGACGAGTAGACAGACTTGAGTAGAGTAGTAGGAGGT
AGGCAGGCGCACTCGCGACGAATTTTCCTTTTGGCAAAAACGTGTCGGTT
CATCACATTCCTGTTTTTGTTCGTCGTCGGAACACCTCCCACCCTTCCTC
TCGACTCGCTTCACGATCGAAACCATCTCGTACCGACCCAACCCGTTGTC
CAAGGCTTACCGCGACGGACCTAGCGGGGAAAAGCATACGGCGACGCACG
TGAGTTTCCTGGAAGAGCTCCTCGGCGCTGTTCGGGCGGCGGTGCCGGCT
GGTCCTCGTCTCCTCTTTGTCGAGGACGCGCTCGCGGTGCGTGGATGACT
GCATTACATCATGATGTTTTGCACAGGGAAGGCCCAAAGTTTGCCTGCAC
TTGTCTTGTCCTCTGGACCATGCCGCTCGGCCGAACGAGGGGCGGTGACA
GCTCTTTTCACGACATTCTTTTCGCCGATTCGGGGTTTGGCAGCAGTTAT
TATATAGGCGAAAGGAAATGACGCCGTCAATAGGATAGCAGAGGCAAGCC
TTCGGTCCCTCTCTCGTCTTTGCTCGAGGACGCACTATGTTGGCGGTCAA
GCCGGTGTACGCCTGCTGGAAAGCGTTGGAAGGACGTGCTGCTGCTTGCA
TCCGGAACCAATACTAGCTTTTGTAGGGCTGTTTGTTTGTACAAGCGCCA
TGAAAGACCCCAAGACCTTTCCCGGCGTATGTTTCTCCCTGACAGGTAAT
TCTTGTGGCAGCGGTGTGGAGGGCGCTGGTGAAGCTGTGGCGGATCGCCA
CATCGCCTGTGGCTGAGAAAAAGGTACGAGACAATTGGGGACCATGCCTA
ATGTTATTTATTGTTGCGGCATACTGACTTGAAGTATTTCATGTTTCCAT
TGCGTAGTTTTGCCCGACCTTGACCCCCGACCTTGGCGAGAGAGACTAAA
CATAAAACATCGTTAGATCTACGCTCTCGCCAAACTCTCGCCAACAAGTG
TCTCGGCGCGCCGCTCCTTTTTTCTCTCTCACCGTTAGACTTGGCAGCCT
GTTATTTGGTACCCTGAAGCCTCGACCCCGGCTACAAATCTTCTCGTGCT
CGCTTAAAAAGTGTTCCGAGAGGTGGGCTTTCCCGGCGCCTCGATCCAAG
TGTCAACGTTGCGGCACACGCGCAGCAGGTGTTGTATTTCTCTTGGCATG
TTCGTTGAAACCATCCCGATGCTTTTCAATATCCAATACCGTATTTGTTT
TTCTGGAATTCGAAAGATTCTACCCGACAACCAACTGCTTCGCATGGCCC
CACCGCGTTATGGTGTCCATGCTCCTGGAAATCGATCAGGCTTTCGTCAC
GGACCGCGGCTTCGCGATGGTTCGGCAGCTGCCAGCGGTGGCGCGTCTGC
TGCAGAAAGAGGTACGTACCACATGGACAGGCCGGCCTGGGTATGGGCAA
GGCGACTGTTGGTACACGGTTGGTACATACGCCTTGCGGTAGGTCGCACC
GGGCACTTGGCTGAGTGGCGAGAGGGAAAGAGAAAAGAGAGCATCTTGAG
GCGTGTGCACGTCTTGCGCCCTGGCCTCAGTGTGTCGTTGAGGCGGGTAC
CCCTCTTGCCCCTGGGTTTGGTGTCGTCCTGTGCAGCACCATGCCTGTTT
GCGGTTGTTTTTTGGCGCTCGTGAAACAGGGGTGGTTCCTCTTCGCTAAC
GCCACAATCCCGTTCGGAAGTCTCCCCTTTCCTCTGTCTGTATCTTGCGG
CCAACGATGTCTTTGGCTTTGATCGATAGGCTGCTGCCTTCCCGCCCTTC
CCCGCTCCCAAGGTGGCCAAGACTGAGGCCCACCTGCAAGCCACTCTGAG
GCCTAACCTTGCAGACCGAGAGAACCTCCGCGCTCTTCCGGCCGAGGGAA
AGCAAGGGGGACACGTGCTGGTGGAGGTATCTATGGCTACATGGGTTGGG
TGTTGACTCGTGCTGCAAGTTCGCGTGGGGAAAACTCTGTCCCTGTTTTT
TGTTTTTCGCTTGTCCTGCTCGGAGAGTAGAGGGAGCTGGCGGCTTCGGA
AGCGGGCGACCGGACCAGGTTGAGTTTGAATTTCGGCGTCCAGTTCGATG
AATATATATAGGGGGTGTAAGATATAATCACCACTGCGAAACTGCGCTGC
CGCAAGCGCCAGGCAACACCGCCGTGGTTTGCCCCAACCCACTTCCTTCA
CTCTTGTGGTGGGCTTCCCTTCTCGTCGTTGCTTGATGGTTTGTTTTTTG
TGGTAGATGATGTTGCTGGCCCAGCGCGAGCGGAGCAAGTGGGACGCCGG
GAAGGCGAGCGGGGCGGTGTACAGCAACGACGAGGAGCAGTCCCAGACCG
TCACGGAGGCCTACCGCCTCTTCTCGCGGAGCAACCCGCTGCACCCGGAC
CTTTGGCCGTCGGGCTTGAAGTTCGAGGCCGAGGTGCGCGACAGACGCGT
TCTCCTAACCCACTTTTTGTTGTTTGCGGGATACGTGCTGTGCTGTTGGC
AAACTTTCGATTTTCGTTGGTTTGACGTCTTGCTTGCTGTCGATCGCCGC
ATCTATCTTGTATCCATCACGCATCCTTGAGGAGTTCCGCGTGGAAGCAG
CGGCAACGAAGGAATAAATAGGGGTTGTGCGGCACACGTTGACTACATAC
ATGTAGGTTTTCCCCGGAAAACGAACTGTCTGTTTTTTTGCGGAAAGCAC
TATCTTTTCCTGCCTTTCGGCCTCCGAGCCAGGCCACCCAGGCTTGCCTC
GATGATCGCGGCAGCTGAGCGTCCTCCCGCTGCCTCCGCCCGCGTTTCGC
AGCAACCAATTCCAATACGTTCTGCCTGTCTCGCGATCCATCCCGCTGTC
GTGACGATCCACACCACACCACACCACTGCTGTCGTGACGACCCATCCCG
CGGTCGTGACGGCCCAACCGACCCCGGTTTCAGGTTATCTCGATGACCGC
TAGGCTCCTGGACGGCGGTGACGACGGCGTGTGCGGCGTTCTCACGAGCG
GCGGGACGGAGAGCATCGTCCTGTCCGCCAAGGCCCACCGGGACTTCTAC
AGAGAGGTGTGGGGGCATATGCCGGCGTGTTTGGTTTGGGGCTGACCCTT
GCTTTGGTTGGTTGTCTGCTTACGCTTAGGGTATTTAGTTGTATCTGTTT
ATCGGCAAAAGTGTGATGCTGGAATGGGCCGCGGTGGTTGCAGTCAGCTG
AAGAGAGCAGAAGTGGTGCTTTCGACGAGGGTTGAGAGTTTTGGCCCGTC
TCGATTTGGGTCGCTGGTTGGCTCTCGGTTTTCTCGTGTTTGTTTTCCGT
CGGCGTTGCCTGTCCATGTTTTCTTTTCCGATCACAATCTGGCTCGCCTC
CTCCGAAATCACCCCCCTTAGATTGCGATACCTTACCCCAAACCCCCATC
CTTGTGGCGGTTCCGGTCGGGGTTGACAGTTCTTGTCAGTTGTTTTTATC
TTGTATTCGTGGTCCTAACGGCGTTTTGGGGCTCGCCATTGGGGCCTGCC
ACCGCTTTTGTGTGCTCTTTCTCGTGTCGGTTTCATGTTGCCGAAAATCT
GATCGATTTTTTTTTCTGCCCCGTCCCACCTGCAGCGAGGCGTGACATCT
CCGGAGATCGTGGCGGCGACGACTGCCCACGCCGCAATCGACAAGGCCTG
TTCGCTCATGAACATTCGCCTCATCAAGGTGAGCAGACCTTGCCGTTATT
GCATGGAACTCGTACATATCTGTAGGCATTTCCATCAACGGCGAAGTAAC
CCCTTACCGTACCTATAGGAAGTACCGCTGACCGGGATGCGACATTTTTT
ATGGCTAGACGAAATGCTCGGGAGGCCCCAAGCGAACTGCGTGCGTGTGT
ATGCGCGAGTCACGTTTTGCACGGGTCGCTAAGTGTTGCAGGTGCCTGTG
GACCCTGCAACCATGAAGGCCGACGTTCGAGCCACGGCGAGGGCCATGTC
GGCCAACACCATCATGGTCTACGCTTCGGCCCCGAGTTTCCCCCACGGCG
TGATCGACCCCGTAGAAGACCTCGCCAAGCTGGCTGCTAGTTACGGGGTG
AGTGAAAAATAGCTTTTGCTGTTGCTGTTGTGAATAGCCTTACCCAAGGG
CAGTATTTGGGACACGAAATACTCTCTTCATGCTTTTATCTCCTGATGAC
TACCTGGAAGCACGATTCCATGGTTATAGAGTTTGCGAACAATTTTTGGA
CCTGCGGGGCTTCAGGCATGCCAGCATGCCAGACGTGCCGACAGACGTGT
TGTCTTATTTCGCGAAGCCCGCTCAGACATGTGTCTACACTGCTTCCAGT
TTCATCCTAGTCCTGCCGCACGCTTCTCCTTAGCTTGCCGCACCCATGCT
TCGAGTCCCAACTTCTCCGTAAACCCACTTCGTTATCTTCCTTCTGCTGT
CGACACCACCACCACACCTGCTTTCGATGTGTCACTTCGTTTCTCCTCTG
CCCATGATACCAACGCAGTGCGGCCTCCACGTAGACTGCTGCCTAGGCGG
TTTCGTGCTGCCGTTCGCAAAGAGCCTGGGCTACCCGATCCCGCCGTTCG
ACTTCGTCGTGGCGGGGGTCACCTCGATATCCGCCGACACCCACAAGTAC
GGCTACGCGCCGAAGGGCACCTCGGTGGCGCTGTTCCGGACCAAAGAGGT
GCGCCCAGTACAGTACCGTGCGTGCGCGGGCGAGTTTGTAGATGATACCC
TGTCCGAGCCTTTGTCGGGGGTGTGCGTCTTGGTCGTTGTTTGTTGCTGC
AGAGGCTGCATGGTTTTGCTCTGCGAGGCGGGCCAAACCGATTCTGCGGG
TGTGCTTCTTTTCTTGTTTTTCTGGTGGGTAGGTGCTGTCGACGTGTTTT
CCTGCTCTATTTGTTGTTTCATTAGGGGTGTTGTTTCAAGACGCCACCGG
CTCCCTTCCCCAGATCTCTCGCGAATATTCTTCCATTGACGGGAGTAGTT
GTGCGTTTTGCATCGGCTCGATCGAAGCAAGTAAGCATCGAGAGGATCGA
TAAAAGCCGGGCGGTTGGACTGTTTCAGTTGTTTTCGCGGGGTGTTCTAA
TGTCATCAAAGGTTTTGGATTTTTTCGTTTTTCTTTCTCCTTGGCCGCTT
TGGGTACCCCTGACCTTTAGTTCTTCGACTTCATCACGCGCCCCCTAAAC
TATGTTTTGCGCTAGCCGGCACCGCTCTTGACGATTTGTTTGATCACCTC
ATGCCCTTACACCCGCCACGCTCTCGTCTTCTTTTCCCCCATCCTCCCGG
CTCTTCTGATGATCCCCGTTGTGTGGCTTAACCAACAGCTGCGGCACCAA
GCGTACTTCTGCTTCCCGGAATGGACGGGAGGCCTCTACGTTACCCCCAC
CATCGCCGGAAGCCGCCCCGGTGGACTGTCCGCGGCCTGCTGGGCTTCCA
TGGTAAGAATTGGCCGGCTGGTCCCAAGAACCTCGTTGTTTCTACTGGCT
ACAACCGCAGTTTCCCTCACAGCTAGACGCTGCATATACGAAGTCTGTGT
TGTGCGGTTGTTTTTCGGCTTTTCTAGACAATATGTCCGCCAAAGCCGCG
ACAACCAGCGGATTTCGAACTTTCCAGTGCTGTCGCTCCCATCCGCCACA
CGCCCCCGCTGCCCCCGGCGTAAAGAAGAAAGAAAATTAATCCAAACAAA
AGTCACGACAAGGCTCCTAAAGCTATTATTTGTACGTTTGTACTCCGCCG
TACAAGTTTGTACTCCACCGTACAAAGCTGCCACCCCGTCGGCCGTGAAC
TCTCGGATGATGGTTATCTCGGTCAGGGAAATGCACATTTCCGGCCGTTT
GATGGTGGATGCTTCATCGTGTTGTTCTTCGCGTGACACGGCGTCGCGTC
TGCATACCGTGTCCGCATGGCCCATTCATCCAGGTGAGCATGGGCCGGAA
CGGCTACGAGAGGGCAGTGCAGGGCATCATGGAAACGGCACAGGCGAGTT
CTGGCACTGTTGAGCTCACTGATCATGGGGAGATCGGGAGCGGGGCGCAG
GCCTAGGGTTGACTCTCTGGATTCATATATGCGCACCGGTTGCTCGTATT
CGGTGGGTTGTTTTTCATGCTGTGTACATAGGTGCACCACATCCACGAGG
AGGTGAAGGCTGTTTTTTTTTGTGTCGGACCCCGTCCGCCCCCGGGCTTT
TCACACGACTGCGACGGATACGTTTGTTGATGCCAGTAGTCATTGCTGGT
GCTAATAGTTTAGGTCACGGCTCAGGACCAGCCGAAGGGCGATCATTGGT
CGAGCGATTAATGTGGTTTCGAATGAGACAAAACATGCACACTCAAAAAG
ATGGGTTTGCTTTGGTACCACGACGACGTTTCAGAAGCATTCTGAAAACT
CCTGGTTGGGGGGGCTGGGTGGTCTGCGGGGCGGGCTTTGTCGTGGACAT
TTTGTTTGGTCTTCAAGGCGTTGCGGCCCGCTTTTTTCTTGCGGCCAACA
ACCGCCGTTCGATGGTACGCGGCGCCCCCAGCTGATTTCCGAACACGATG
GTCATCCGATGATGTTGATCATCCGATGATGTTGAAACGGAAACGGAAAC
TCTGTTGGGCTCTGGCGCGTTTCCGTTTCGCAGGAAGTCGCTCAAGGGGT
TCGCGGTATCTCCGGGCTTTCTCTTGTAGGAGACCCCAGGTCCATGGTTG
TTTGCTTCCGCGGGGACAAGGGCGTCAACATCTACAAAGTTGTGAGTGCC
TCCGAAGTTTCCATGCACTCTGTTGTTCGATTCACCATACCCAACGTCTC
CACGTCACATCTTATTTTGGATGAGGCTTGAAGGATACAAGATGATCGCT
GCTGAACAACGAGAAATCGGGCAAGGAGATGCTTGCCAAAGCGGACCCGC
CATGCAGGAAACCGTAGTAACTAATTAAATGCTGAGCTTTAGCGCGAACA
AGTTTGCCTTGAATTATCCGAGACGGGAAGTGATCTCTCAGTGATCCAGT
ATACCCCGTCCCCTACCAACCTCCGTGGACTTGCGATACGCTGGCTGCGC
GGGATCAGGGGGACCGTATGAGCCACCGCGGGTGGAGCCTGAACGCTCTG
CAGCACCCTCCGTGCCTGCACCTCTGCGTGACCATGTGCCACGTGGGCAA
GGCGGCAGAGTTCCTGACAGACCTCTTGACTTCTACGCTGGAAGCTGGAG
CTACGGCCGGAGAGGTGAGTGGGCAGAGCATGTGTAACGCTCGCACGATC
TTGTTTTTGTTCATTTTGTTGTGGATGTCATTGGCTTGGAAGTCGTACTT
CTATGTTTCTGGTAGTTGAATGGTGACGAGAAAGGTGAGCTGCAAAGTGT
CTCCCGCCCCAGTGAACACCCGATTGTTGCAGAGCAGAAAACATGTGGCG
GTCACTTGTTTTTCGGCGGTCTTAACCTGCTGCCTTCTCGTTGTGGGCTC
GGTCTGTACTTGGTCGCTGGCACCATGACATTATTCACTCGGACGTCGGG
GTGTTTCCTGCTTTTCGCACGGCGGTTTGACGGTGTCTCGATGCAGGGAG
ACGAAAACAGCACCGCCGCGATCTACGGCATGGCCTCTTCCATGCCGGCG
GGTCCGGTCAACGTTCTGTTGCGTGCGTACACTGACGTCACCCTTGGCTC
GTGAGGGGAAAGGTGTGCCATGCCTGTGGAGTATCGTCGGACGAACGTTT
TTGTATGAGAAACACACCCATCGAGCGGGGGATAGTGTCACCAGCAGATA
GATACCGTGTTCGGCCGAAACGGTGGTGTGAAGCAAGGGTTGCGAGGCCA
AAATATAAGTGCTGTTGATGGGAAAACCACAACACCCCGCGGGGGACTTG
TAAAAGAACAACCCGCCGGGGGGAAATCCAGACGGGGGAGTTGCTTTCTT
CACAAAGCGTCCCCCCCCGCGGGAAAACCAAGTTTGGCCAGTATTGGAAT
TTTGGGGGAAGGGGTTCCCTTAACTGATAACGGTGTGCTTCGTTCATGGC
ACTTGTCCTAGCATCTCGTGTGATGAAGAGGTTGTTCGACGCCTGTCCCG
CTTGCTCTGGGCGAAACACTACAGCAGGATGTGTCACTCACTGTGGTCAT
GCCTGCACACACGGAGACGTGAGCGGTTCGACTCGCATACTATGAAAACG
ATCTGAGCGTTGCCACAGCAAATACCTACTGCACCCACCCAGAGAACCCA
CCCAGAGGGATATGTCGGACGAAGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig106:353204..363978-

>mRNA_C-linearis_contig106.994.1 ID=mRNA_C-linearis_contig106.994.1|Name=mRNA_C-linearis_contig106.994.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3858bp|location=Sequence derived from alignment at C-linearis_contig106:353204..363978- (Chordaria linearis ClinC8C monoicous)
ATGCCTTTGGCTGATGAGAATGGATTCTCTCTCGGAGCGGTGTCTCTCGG
AAACATCGATCTGCGAGCATGCGTCAGCAGCCGAGGACTAACTGCGGTGG
CAACGGGGTTCCTGGGCACGTGGTTTCTTTTGTCGTACGTACACCAGATG
CCTTTGGCTGATGAGAATGGATTCTCTCTCGGAGCGGTGTCTCTCGGAAA
CATCGATCTGCGAGCATGCGTCAGCAGCCGAGGACTAACTGCGGTGGCAA
CGGGGTTCCTGGGCACGTGGTTTCTTTTGTCGTACGTACACCAGGCGGTC
GGGAAATCGGGGTCGCCTTGGGTTCATCCCCGCATCGCCCGCCCCATCCG
CCGGGTTCGCGGAGCACTGGTCGCGGGAATCTTGCTCGCCATCTTGCTGC
TGCGGGCGGTCGGGAAATCGGGGTCGCCTTGGGTTCATCCCCGCATCGCC
CGCCCCATCCGCCGGGTTCGCGGAGCACTGGTCGCGGGAATCTTGCTCGC
CATCTTGCTGCTGCGGGCTTACCGCGACGGACCTAGCGGGGAAAAGCATA
CGGCGACGCACGTGAGTTTCCTGGAAGAGCTCCTCGGCGCTGTTCGGGCG
GCGGTGCCGGCTGGTCCTCGTCTCCTCTTTGTCGAGGACGCGCTCGCGGC
TTACCGCGACGGACCTAGCGGGGAAAAGCATACGGCGACGCACGTGAGTT
TCCTGGAAGAGCTCCTCGGCGCTGTTCGGGCGGCGGTGCCGGCTGGTCCT
CGTCTCCTCTTTGTCGAGGACGCGCTCGCGGTAATTCTTGTGGCAGCGGT
GTGGAGGGCGCTGGTGAAGCTGTGGCGGATCGCCACATCGCCTGTGGCTG
AGAAAAAGGTAATTCTTGTGGCAGCGGTGTGGAGGGCGCTGGTGAAGCTG
TGGCGGATCGCCACATCGCCTGTGGCTGAGAAAAAGGCTTTCGTCACGGA
CCGCGGCTTCGCGATGGTTCGGCAGCTGCCAGCGGTGGCGCGTCTGCTGC
AGAAAGAGGCTTTCGTCACGGACCGCGGCTTCGCGATGGTTCGGCAGCTG
CCAGCGGTGGCGCGTCTGCTGCAGAAAGAGGTGGCCAAGACTGAGGCCCA
CCTGCAAGCCACTCTGAGGCCTAACCTTGCAGACCGAGAGAACCTCCGCG
CTCTTCCGGCCGAGGGAAAGCAAGGGGGACACGTGCTGGTGGAGGTGGCC
AAGACTGAGGCCCACCTGCAAGCCACTCTGAGGCCTAACCTTGCAGACCG
AGAGAACCTCCGCGCTCTTCCGGCCGAGGGAAAGCAAGGGGGACACGTGC
TGGTGGAGATGATGTTGCTGGCCCAGCGCGAGCGGAGCAAGTGGGACGCC
GGGAAGGCGAGCGGGGCGGTGTACAGCAACGACGAGGAGCAGTCCCAGAC
CGTCACGGAGGCCTACCGCCTCTTCTCGCGGAGCAACCCGCTGCACCCGG
ACCTTTGGCCGTCGGGCTTGAAGTTCGAGGCCGAGATGATGTTGCTGGCC
CAGCGCGAGCGGAGCAAGTGGGACGCCGGGAAGGCGAGCGGGGCGGTGTA
CAGCAACGACGAGGAGCAGTCCCAGACCGTCACGGAGGCCTACCGCCTCT
TCTCGCGGAGCAACCCGCTGCACCCGGACCTTTGGCCGTCGGGCTTGAAG
TTCGAGGCCGAGGTTATCTCGATGACCGCTAGGCTCCTGGACGGCGGTGA
CGACGGCGTGTGCGGCGTTCTCACGAGCGGCGGGACGGAGAGCATCGTCC
TGTCCGCCAAGGCCCACCGGGACTTCTACAGAGAGGTTATCTCGATGACC
GCTAGGCTCCTGGACGGCGGTGACGACGGCGTGTGCGGCGTTCTCACGAG
CGGCGGGACGGAGAGCATCGTCCTGTCCGCCAAGGCCCACCGGGACTTCT
ACAGAGAGCGAGGCGTGACATCTCCGGAGATCGTGGCGGCGACGACTGCC
CACGCCGCAATCGACAAGGCCTGTTCGCTCATGAACATTCGCCTCATCAA
GCGAGGCGTGACATCTCCGGAGATCGTGGCGGCGACGACTGCCCACGCCG
CAATCGACAAGGCCTGTTCGCTCATGAACATTCGCCTCATCAAGGTGCCT
GTGGACCCTGCAACCATGAAGGCCGACGTTCGAGCCACGGCGAGGGCCAT
GTCGGCCAACACCATCATGGTCTACGCTTCGGCCCCGAGTTTCCCCCACG
GCGTGATCGACCCCGTAGAAGACCTCGCCAAGCTGGCTGCTAGTTACGGG
GTGCCTGTGGACCCTGCAACCATGAAGGCCGACGTTCGAGCCACGGCGAG
GGCCATGTCGGCCAACACCATCATGGTCTACGCTTCGGCCCCGAGTTTCC
CCCACGGCGTGATCGACCCCGTAGAAGACCTCGCCAAGCTGGCTGCTAGT
TACGGGTGCGGCCTCCACGTAGACTGCTGCCTAGGCGGTTTCGTGCTGCC
GTTCGCAAAGAGCCTGGGCTACCCGATCCCGCCGTTCGACTTCGTCGTGG
CGGGGGTCACCTCGATATCCGCCGACACCCACAAGTACGGCTACGCGCCG
AAGGGCACCTCGGTGGCGCTGTTCCGGACCAAAGAGTGCGGCCTCCACGT
AGACTGCTGCCTAGGCGGTTTCGTGCTGCCGTTCGCAAAGAGCCTGGGCT
ACCCGATCCCGCCGTTCGACTTCGTCGTGGCGGGGGTCACCTCGATATCC
GCCGACACCCACAAGTACGGCTACGCGCCGAAGGGCACCTCGGTGGCGCT
GTTCCGGACCAAAGAGCTGCGGCACCAAGCGTACTTCTGCTTCCCGGAAT
GGACGGGAGGCCTCTACGTTACCCCCACCATCGCCGGAAGCCGCCCCGGT
GGACTGTCCGCGGCCTGCTGGGCTTCCATGCTGCGGCACCAAGCGTACTT
CTGCTTCCCGGAATGGACGGGAGGCCTCTACGTTACCCCCACCATCGCCG
GAAGCCGCCCCGGTGGACTGTCCGCGGCCTGCTGGGCTTCCATGGTGAGC
ATGGGCCGGAACGGCTACGAGAGGGCAGTGCAGGGCATCATGGAAACGGC
ACAGGCGAGTGAGCATGGGCCGGAACGGCTACGAGAGGGCAGTGCAGGGC
ATCATGGAAACGGCACAGGCGATCGCTCAAGGGGTTCGCGGTATCTCCGG
GCTTTCTCTTGTAGGAGACCCCAGGTCCATGGTTGTTTGCTTCCGCGGGG
ACAAGGGCGTCAACATCTACAAAGTTTCGCTCAAGGGGTTCGCGGTATCT
CCGGGCTTTCTCTTGTAGGAGACCCCAGGTCCATGGTTGTTTGCTTCCGC
GGGGACAAGGGCGTCAACATCTACAAAGTTGGGGACCGTATGAGCCACCG
CGGGTGGAGCCTGAACGCTCTGCAGCACCCTCCGTGCCTGCACCTCTGCG
TGACCATGTGCCACGTGGGCAAGGCGGCAGAGTTCCTGACAGACCTCTTG
ACTTCTACGCTGGAAGCTGGAGCTACGGCCGGAGAGGGGGACCGTATGAG
CCACCGCGGGTGGAGCCTGAACGCTCTGCAGCACCCTCCGTGCCTGCACC
TCTGCGTGACCATGTGCCACGTGGGCAAGGCGGCAGAGTTCCTGACAGAC
CTCTTGACTTCTACGCTGGAAGCTGGAGCTACGGCCGGAGAGGGAGACGA
AAACAGCACCGCCGCGATCTACGGCATGGCCTCTTCCATGCCGGCGGGTC
CGGTCAACGTTCTGTTGCGTGCGTACACTGACGTCACCCTTGGCTCGTGA
GGAGACGAAAACAGCACCGCCGCGATCTACGGCATGGCCTCTTCCATGCC
GGCGGGTCCGGTCAACGTTCTGTTGCGTGCGTACACTGACGTCACCCTTG
GCTCGTGA
back to top