mRNA_C-linearis_contig106.1008.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig106.1008.1
Unique NamemRNA_C-linearis_contig106.1008.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: D7G5N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N6_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.230e-20
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    7 PLRYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLFRSDWNKDLFVEDIPG 192
            PL YIP WGGFCA+GIA ED WT   LGPP++P+SWLIT ++ L +FRS+  K  F+EDIPG
Sbjct:  131 PLDYIPAWGGFCAYGIAAEDWWTVSTLGPPSDPNSWLITDDNVLRIFRSEVPKAYFMEDIPG 192          
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: D7G8M9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8M9_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 7.870e-18
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    1 EQPLRYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLFRSDWNKDLFVEDIPG 192
            E P  YIP+WGGFC+WGI+ ED W    LGPP +P+ WLIT +  L  FRS+     F+ D+PG
Sbjct:  149 ESPKSYIPQWGGFCSWGISREDWWNADELGPPADPNQWLITDDGGLHFFRSELPMSKFLGDVPG 212          
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: A0A6H5JXZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ9_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 5.410e-15
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    7 PLRYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLFRSDWNKDLFVEDIPGYTE 201
            P +Y+P WGGFC++GI+ ED W    LGPP+NPD WLI  +D L+LFRS+   D F +D   Y +
Sbjct:  162 PEKYLPAWGGFCSFGISHEDIWGPDVLGPPSNPDIWLI-EDDRLYLFRSETPYDKFKDDKARYIK 225          
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: D7FW14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW14_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.310e-14
Identity = 32/61 (52.46%), Postives = 38/61 (62.30%), Query Frame = 1
Query:   10 LRYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLFRSDWNKDLFVEDIPG 192
            L+Y+P WGGFC++GIA E  WT   LGP  NP  W I     L +FRS   K+ F EDIPG
Sbjct:   23 LKYVPAWGGFCSYGIANESVWTSTTLGPFGNPSKWGIYG-GRLHIFRSSTPKEEFEEDIPG 82          
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: D7FW15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW15_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.160e-12
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    7 PLRYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLFRSD 156
            P RY+P WGGFC +GI+ E  W    LGPP+NPD WLI  +D L+LFRS+
Sbjct:  162 PERYLPAWGGFCGFGISHEVVWGPDVLGPPSNPDFWLI-EDDRLYLFRSE 210          
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: A0A7S2USB8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USB8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.820e-10
Identity = 26/55 (47.27%), Postives = 40/55 (72.73%), Query Frame = 1
Query:   13 RYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLFRSDWNKDLFV 177
            +YIP++GGFCAWG+A ED WT  NL PP +  ++L+    +L+LF  ++ ++LFV
Sbjct:    1 KYIPQYGGFCAWGVAYEDQWTASNLCPPVDFYTYLM-FNGKLYLFNGEFVRELFV 54          
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: A0A7S2V1S8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1S8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.310e-8
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1
Query:    4 QPLRYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLFRS----DWNKDLFVE 180
            +P  Y+P++GGFC +G+AEE  WT   L  P NP  +LI  E  L +FRS    DW + L VE
Sbjct:   86 KPEAYVPEFGGFCTYGVAEETYWTASTLAAPANPLVYLI-LEGHLHVFRSLNVLDWFQKLGVE 147          
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: A0A7S2MN02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MN02_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 8.200e-8
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:    7 PLRYIPKWGGFCAWGIAEEDTWTQYNL---GPPTNPDSWLITAEDELFLF 147
            P +Y+P+WGGFCA+GIA E  WT   +   GP ++P+ W I  +D+L+ F
Sbjct:   10 PTKYLPQWGGFCAYGIALESFWTWEEVKTNGPESDPNVWQI-IDDKLYFF 58          
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: A0A7S3UVA0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVA0_HETAK)

HSP 1 Score: 55.5 bits (132), Expect = 1.130e-7
Identity = 22/48 (45.83%), Postives = 29/48 (60.42%), Query Frame = 1
Query:    7 PLRYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLFR 150
            P +Y+P WGGFCA+G+AEE  WT   +     PD+W I  +  LF F 
Sbjct:   65 PEKYVPAWGGFCAYGVAEETWWTAETMSAGVVPDAWRI-IDGRLFFFH 111          
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: A0A7S3JR48_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR48_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.250e-7
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    7 PLRYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLF 147
            P +Y+PK+GGFC++GI  E  WT+  LGP  N + W+I  +D LF+F
Sbjct:  196 PDKYVPKFGGFCSYGITNEFFWTKDTLGPNANKNVWII-YDDHLFVF 241          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G5N6_ECTSI1.230e-2062.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8M9_ECTSI7.870e-1851.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JXZ9_9PHAE5.410e-1550.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW14_ECTSI2.310e-1452.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FW15_ECTSI2.160e-1258.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2USB8_9STRA1.820e-1047.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2V1S8_9STRA3.310e-846.03Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2MN02_9STRA8.200e-846.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3UVA0_HETAK1.130e-745.83Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3JR48_9STRA1.250e-748.94Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:448495..449117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.4e-16
Seed eggNOG ortholog2880.D7G5N6
Hectar predicted targeting categoryother localisation
EggNOG OGs2D48G@1,2SU9E@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size203
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927402.540742-CDS-C-linearis_contig106:448494..4486461622927402.540742-CDS-C-linearis_contig106:448494..448646Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 448495..448646 +
1690879680.3701704-CDS-C-linearis_contig106:448494..4486461690879680.3701704-CDS-C-linearis_contig106:448494..448646Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 448495..448646 +
1622927402.5518987-CDS-C-linearis_contig106:449068..4491171622927402.5518987-CDS-C-linearis_contig106:449068..449117Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 449069..449117 +
1690879680.3816903-CDS-C-linearis_contig106:449068..4491171690879680.3816903-CDS-C-linearis_contig106:449068..449117Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 449069..449117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.1008.1prot_C-linearis_contig106.1008.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig106 448495..449117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig106.1008.1

>prot_C-linearis_contig106.1008.1 ID=prot_C-linearis_contig106.1008.1|Name=mRNA_C-linearis_contig106.1008.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=67bp
EQPLRYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLFR
SDWNKDLFVEDIPGYTE
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mRNA from alignment at C-linearis_contig106:448495..449117+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig106.1008.1 ID=mRNA_C-linearis_contig106.1008.1|Name=mRNA_C-linearis_contig106.1008.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=623bp|location=Sequence derived from alignment at C-linearis_contig106:448495..449117+ (Chordaria linearis ClinC8C monoicous)
GAGCAACCCTTGCGCTACATCCCAAAGTGGGGGGGGTTCTGCGCTTGGGG AATAGCTGAAGAAGACACCTGGACACAGTACAACTTGGGGCCACCCACCA ATCCCGATTCATGGCTCATCACCGCTGAGGATGAGCTGTTTCTCTTCCGA AGGTACCCAATTAACCGCTATCCATCCACGCAATGCAACTCTGTAGGTAG GTGTAGAGTTTTTGCGGGGGATCGGGAATCGCACATTGTGGACGTGCAGC GCCGCCCACCGTTCACACGCACGCGCGTATATCATAAAAATAAAACGTGC TTGACAAGTTGTCGAGCCTATTTGGCCCTCCCTCGATAGCGTAGACCTTG CAACATAGACTACGTAGTTCGGAGTCTTCCGAGGTGGCGCCCTTCTTGGA AGCAGCAACAGAGTGGGTTGATCGCCGTCATTTGGCTCGATAACTCATCA ATTTGTGGTAGAGGTAACATAGTACCGCGAGAAAACACGACCGCCAACGG GGGCACCCTTCTCGCCAACCAACTCATCGTTCGCGGCTGAAATCTGCTTC ACTTGTTGCTCTCCTGTTTGACAGCGACTGGAACAAGGATTTGTTCGTCG AGGATATTCCGGGATACACAGAG
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Coding sequence (CDS) from alignment at C-linearis_contig106:448495..449117+

>mRNA_C-linearis_contig106.1008.1 ID=mRNA_C-linearis_contig106.1008.1|Name=mRNA_C-linearis_contig106.1008.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at C-linearis_contig106:448495..449117+ (Chordaria linearis ClinC8C monoicous)
GAGCAACCCTTGCGCTACATCCCAAAGTGGGGGGGGTTCTGCGCTTGGGG
AATAGCTGAAGAAGACACCTGGACACAGTACAACTTGGGGCCACCCACCA
ATCCCGATTCATGGCTCATCACCGCTGAGGATGAGCTGTTTCTCTTCCGA
AGGAGCAACCCTTGCGCTACATCCCAAAGTGGGGGGGGTTCTGCGCTTGG
GGAATAGCTGAAGAAGACACCTGGACACAGTACAACTTGGGGCCACCCAC
CAATCCCGATTCATGGCTCATCACCGCTGAGGATGAGCTGTTTCTCTTCC
GAAGCGACTGGAACAAGGATTTGTTCGTCGAGGATATTCCGGGATACACA
GAGCGACTGGAACAAGGATTTGTTCGTCGAGGATATTCCGGGATACACAG
AG
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