mRNA_C-linearis_contig106.1008.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: D7G5N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N6_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 1.230e-20 Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 1 Query: 7 PLRYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLFRSDWNKDLFVEDIPG 192 PL YIP WGGFCA+GIA ED WT LGPP++P+SWLIT ++ L +FRS+ K F+EDIPG Sbjct: 131 PLDYIPAWGGFCAYGIAAEDWWTVSTLGPPSDPNSWLITDDNVLRIFRSEVPKAYFMEDIPG 192
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: D7G8M9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8M9_ECTSI) HSP 1 Score: 83.2 bits (204), Expect = 7.870e-18 Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 1 Query: 1 EQPLRYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLFRSDWNKDLFVEDIPG 192 E P YIP+WGGFC+WGI+ ED W LGPP +P+ WLIT + L FRS+ F+ D+PG Sbjct: 149 ESPKSYIPQWGGFCSWGISREDWWNADELGPPADPNQWLITDDGGLHFFRSELPMSKFLGDVPG 212
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: A0A6H5JXZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ9_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 5.410e-15 Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1 Query: 7 PLRYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLFRSDWNKDLFVEDIPGYTE 201 P +Y+P WGGFC++GI+ ED W LGPP+NPD WLI +D L+LFRS+ D F +D Y + Sbjct: 162 PEKYLPAWGGFCSFGISHEDIWGPDVLGPPSNPDIWLI-EDDRLYLFRSETPYDKFKDDKARYIK 225
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: D7FW14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW14_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 2.310e-14 Identity = 32/61 (52.46%), Postives = 38/61 (62.30%), Query Frame = 1 Query: 10 LRYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLFRSDWNKDLFVEDIPG 192 L+Y+P WGGFC++GIA E WT LGP NP W I L +FRS K+ F EDIPG Sbjct: 23 LKYVPAWGGFCSYGIANESVWTSTTLGPFGNPSKWGIYG-GRLHIFRSSTPKEEFEEDIPG 82
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: D7FW15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW15_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 2.160e-12 Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1 Query: 7 PLRYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLFRSD 156 P RY+P WGGFC +GI+ E W LGPP+NPD WLI +D L+LFRS+ Sbjct: 162 PERYLPAWGGFCGFGISHEVVWGPDVLGPPSNPDFWLI-EDDRLYLFRSE 210
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: A0A7S2USB8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USB8_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.820e-10 Identity = 26/55 (47.27%), Postives = 40/55 (72.73%), Query Frame = 1 Query: 13 RYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLFRSDWNKDLFV 177 +YIP++GGFCAWG+A ED WT NL PP + ++L+ +L+LF ++ ++LFV Sbjct: 1 KYIPQYGGFCAWGVAYEDQWTASNLCPPVDFYTYLM-FNGKLYLFNGEFVRELFV 54
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: A0A7S2V1S8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1S8_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 3.310e-8 Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1 Query: 4 QPLRYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLFRS----DWNKDLFVE 180 +P Y+P++GGFC +G+AEE WT L P NP +LI E L +FRS DW + L VE Sbjct: 86 KPEAYVPEFGGFCTYGVAEETYWTASTLAAPANPLVYLI-LEGHLHVFRSLNVLDWFQKLGVE 147
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: A0A7S2MN02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MN02_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 8.200e-8 Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 1 Query: 7 PLRYIPKWGGFCAWGIAEEDTWTQYNL---GPPTNPDSWLITAEDELFLF 147 P +Y+P+WGGFCA+GIA E WT + GP ++P+ W I +D+L+ F Sbjct: 10 PTKYLPQWGGFCAYGIALESFWTWEEVKTNGPESDPNVWQI-IDDKLYFF 58
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: A0A7S3UVA0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVA0_HETAK) HSP 1 Score: 55.5 bits (132), Expect = 1.130e-7 Identity = 22/48 (45.83%), Postives = 29/48 (60.42%), Query Frame = 1 Query: 7 PLRYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLFR 150 P +Y+P WGGFCA+G+AEE WT + PD+W I + LF F Sbjct: 65 PEKYVPAWGGFCAYGVAEETWWTAETMSAGVVPDAWRI-IDGRLFFFH 111
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Match: A0A7S3JR48_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR48_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 1.250e-7 Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1 Query: 7 PLRYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLF 147 P +Y+PK+GGFC++GI E WT+ LGP N + W+I +D LF+F Sbjct: 196 PDKYVPKFGGFCSYGITNEFFWTKDTLGPNANKNVWII-YDDHLFVF 241 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.1008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig106.1008.1 >prot_C-linearis_contig106.1008.1 ID=prot_C-linearis_contig106.1008.1|Name=mRNA_C-linearis_contig106.1008.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=67bp EQPLRYIPKWGGFCAWGIAEEDTWTQYNLGPPTNPDSWLITAEDELFLFRback to top mRNA from alignment at C-linearis_contig106:448495..449117+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig106.1008.1 ID=mRNA_C-linearis_contig106.1008.1|Name=mRNA_C-linearis_contig106.1008.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=623bp|location=Sequence derived from alignment at C-linearis_contig106:448495..449117+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig106:448495..449117+ >mRNA_C-linearis_contig106.1008.1 ID=mRNA_C-linearis_contig106.1008.1|Name=mRNA_C-linearis_contig106.1008.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at C-linearis_contig106:448495..449117+ (Chordaria linearis ClinC8C monoicous)back to top |