mRNA_C-linearis_contig106.1002.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig106.1002.1
Unique NamemRNA_C-linearis_contig106.1002.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5L4W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W3_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.460e-27
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = -2 
Query:  294 YFGRKPACTAATCADCGFGKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHS 524
            ++GRKPAC A  C++CGFG   GIP  C+ALE  + R+ GW+RFE+Q M DG+VHKKQQVPQ G L DLWK FV HS
Sbjct:   58 HWGRKPACVAMECSECGFGNPGGIPMKCDALESMADRVVGWLRFENQVMEDGKVHKKQQVPQAGKLDDLWKEFVEHS 134
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BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 5.740e-25
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = -2 
Query:  294 YFGRKPACTAATCADCGFGKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHS 524
            ++GRKPAC A  C++CGFG   GIP NC+AL   + R+ GW+RFEDQ M DG+VHKKQQ+PQ G L DLWK FV HS
Sbjct:  205 HWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLDDLWKEFVEHS 281
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BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5JF90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF90_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 6.420e-25
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = -2 
Query:  291 YFGRKPACTAATCADCGFGKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHSL 524
            ++GRKPAC A  C++CGFGK  GIP NC A+ ++  R+  W+RFEDQ M DG+VHKKQQ+PQ G L DLW  F+AHS+
Sbjct:  458 FWGRKPACAAMKCSECGFGKPGGIPTNCTAIAKNRERVVAWIRFEDQTMPDGKVHKKQQLPQTGKLEDLWDEFMAHSV 535
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BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 9.260e-25
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = -2 
Query:  288 YFGRKPACTAATCADCGFGKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHSLL 524
            ++GRKPAC A  C++CGFGK  GIP NC A+ ++  R+  W+RFEDQ M DG+VHKKQQ+PQ G L DLW  F+AHS +
Sbjct:  458 FWGRKPACAAMKCSECGFGKPGGIPTNCTAIAKNRERVVAWIRFEDQTMPDGKVHKKQQLPQTGKLEDLWDEFMAHSYM 536
[Close]
BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5KXG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG9_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 3.750e-24
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = -2 
Query:  294 YFGRKPACTAATCADCGFGKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHS 524
            ++GRKPAC A  C++CGFG   GIP NC+AL   + R+ GW+RF DQ M DG+VHKKQQ+PQ G LGDLW+ FV HS
Sbjct:  129 HWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGKVHKKQQLPQGGKLGDLWQEFVEHS 205
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BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.310e-24
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = -2 
Query:  294 YFGRKPACTAATCADCGFGKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHS 524
            ++GRKPAC A  C++CGFG   GIP NC+AL   + R+ GW+RF DQ M DG+VHKKQQ+PQ G LGDLW+ FV HS
Sbjct:  471 HWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGKVHKKQQLPQGGKLGDLWQEFVEHS 547
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BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.550e-24
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = -2 
Query:  294 YFGRKPACTAATCADCGFGKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHS 524
            ++GRKPAC A  C++CGFG   GIP NC+AL   + R+ GW+RF DQ M DG+VHKKQQ+PQ G LGDLW+ FV HS
Sbjct: 1095 HWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGKVHKKQQLPQGGKLGDLWQEFVEHS 1171
[Close]
BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5KY26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY26_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.840e-23
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = -2 
Query:  294 YFGRKPACTAATCADCGFGKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHS 524
            ++G KPAC A  C++C FG  + IP NC+AL   + R+ GW+RFEDQ M DG+VHKKQQ+PQ G LGDLWK FV HS
Sbjct:  183 HWGGKPACVAMECSECRFGNPDDIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLGDLWKEFVEHS 259
[Close]
BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5KI39_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI39_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.240e-23
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = -2 
Query:  294 YFGRKPACTAATCADCGFGKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHS 524
            ++GRKPAC A  C + GFG   GIP NC+AL   + R+ GW+RFEDQ M DG+VHKKQQ+PQ G LGDLW   V HS
Sbjct:  205 HWGRKPACVAMECPEYGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQLPQAGKLGDLWDEVVEHS 281
[Close]
BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5KMG8_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG8_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 9.900e-13
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = -2 
Query:  279 GKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHSLLVSL 470
            G    IP NC+AL   + R+ GW+RFEDQ M DG+VHKKQQ+ Q G LGDLW+ FV  S  V +
Sbjct:  233 GDSGSIPINCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQLTQAGKLGDLWQEFVERSKKVDV 296
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5L4W3_9PHAE3.460e-2762.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K491_9PHAE5.740e-2562.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF90_9PHAE6.420e-2558.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7E6_9PHAE9.260e-2558.23Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXG9_9PHAE3.750e-2461.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT99_9PHAE4.310e-2461.04Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW3_9PHAE4.550e-2461.04MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KY26_9PHAE3.840e-2359.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI39_9PHAE4.240e-2359.74Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMG8_9PHAE9.900e-1354.69Reverse transcriptase domain-containing protein (F... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:428751..429275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size525
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.1002.1prot_C-linearis_contig106.1002.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig106 428851..429198 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927398.343383-UTR-C-linearis_contig106:428750..4288501622927398.343383-UTR-C-linearis_contig106:428750..428850Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 428751..428850 +
1690879677.0765932-UTR-C-linearis_contig106:428750..4288501690879677.0765932-UTR-C-linearis_contig106:428750..428850Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 428751..428850 +
1622927398.3642712-UTR-C-linearis_contig106:429198..4292751622927398.3642712-UTR-C-linearis_contig106:429198..429275Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 429199..429275 +
1690879677.0966108-UTR-C-linearis_contig106:429198..4292751690879677.0966108-UTR-C-linearis_contig106:429198..429275Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 429199..429275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927398.3531773-CDS-C-linearis_contig106:428850..4291981622927398.3531773-CDS-C-linearis_contig106:428850..429198Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 428851..429198 +
1690879677.0876791-CDS-C-linearis_contig106:428850..4291981690879677.0876791-CDS-C-linearis_contig106:428850..429198Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 428851..429198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig106.1002.1

>prot_C-linearis_contig106.1002.1 ID=prot_C-linearis_contig106.1002.1|Name=mRNA_C-linearis_contig106.1002.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=116bp
MLHVVGLALPLGKLVVFHILVGRGANRERGENGQRGAAKQGKTDNEFGET
PWVPVGYRPINSPAESGRQTLSTDHPTGPAEVLAASCALARRPSFGPRSE
PTRQAGGSAFRGPRS*
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mRNA from alignment at C-linearis_contig106:428751..429275+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig106.1002.1 ID=mRNA_C-linearis_contig106.1002.1|Name=mRNA_C-linearis_contig106.1002.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=525bp|location=Sequence derived from alignment at C-linearis_contig106:428751..429275+ (Chordaria linearis ClinC8C monoicous)
AGCAGTCGCGCATGTCAAGATCGCGGCAGCTTCGTGCCTGAACTTTTCGA
TGAAGTCGGTCTCAACCAGCAGTGTCCCATGAACGAGCGACATCATCGAC
ATGTTGCATGTTGTGGGCTTGGCGCTGCCACTTGGCAAGCTCGTGGTGTT
CCATATACTGGTGGGGAGAGGGGCAAATAGGGAAAGAGGGGAAAATGGAC
AGAGAGGGGCGGCAAAACAAGGGAAGACGGACAATGAATTTGGTGAAACA
CCCTGGGTTCCGGTGGGGTACAGGCCTATAAACTCACCAGCAGAGAGTGG
GCGACAAACCCTTTCCACAGATCACCCAACGGGCCCTGCTGAGGTACTTG
CTGCTTCTTGTGCACTTGCCCGTCGGCCATCTTTTGGTCCTCGAAGCGAA
CCCACCCGGCAAGCCGGTGGGAGTGCCTTTCGAGGGCCTCGCAGTTAGCG
GGAATGCCGTTGTGTTTTCCGAACCCGCAGTCGGCGCACGTTGCGGCGGT
GCACGCTGGCTTTCTGCCGAAATAC
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Coding sequence (CDS) from alignment at C-linearis_contig106:428751..429275+

>mRNA_C-linearis_contig106.1002.1 ID=mRNA_C-linearis_contig106.1002.1|Name=mRNA_C-linearis_contig106.1002.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at C-linearis_contig106:428751..429275+ (Chordaria linearis ClinC8C monoicous)
ATGTTGCATGTTGTGGGCTTGGCGCTGCCACTTGGCAAGCTCGTGGTGTT
CCATATACTGGTGGGGAGAGGGGCAAATAGGGAAAGAGGGGAAAATGGAC
AGAGAGGGGCGGCAAAACAAGGGAAGACGGACAATGAATTTGGTGAAACA
CCCTGGGTTCCGGTGGGGTACAGGCCTATAAACTCACCAGCAGAGAGTGG
GCGACAAACCCTTTCCACAGATCACCCAACGGGCCCTGCTGAGGTACTTG
CTGCTTCTTGTGCACTTGCCCGTCGGCCATCTTTTGGTCCTCGAAGCGAA
CCCACCCGGCAAGCCGGTGGGAGTGCCTTTCGAGGGCCTCGCAGTTAGAT
GTTGCATGTTGTGGGCTTGGCGCTGCCACTTGGCAAGCTCGTGGTGTTCC
ATATACTGGTGGGGAGAGGGGCAAATAGGGAAAGAGGGGAAAATGGACAG
AGAGGGGCGGCAAAACAAGGGAAGACGGACAATGAATTTGGTGAAACACC
CTGGGTTCCGGTGGGGTACAGGCCTATAAACTCACCAGCAGAGAGTGGGC
GACAAACCCTTTCCACAGATCACCCAACGGGCCCTGCTGAGGTACTTGCT
GCTTCTTGTGCACTTGCCCGTCGGCCATCTTTTGGTCCTCGAAGCGAACC
CACCCGGCAAGCCGGTGGGAGTGCCTTTCGAGGGCCTCGCAGTTAG
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