mRNA_C-linearis_contig106.1002.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5L4W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W3_9PHAE) HSP 1 Score: 109 bits (272), Expect = 3.460e-27 Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = -2 Query: 294 YFGRKPACTAATCADCGFGKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHS 524
++GRKPAC A C++CGFG GIP C+ALE + R+ GW+RFE+Q M DG+VHKKQQVPQ G L DLWK FV HS
Sbjct: 58 HWGRKPACVAMECSECGFGNPGGIPMKCDALESMADRVVGWLRFENQVMEDGKVHKKQQVPQAGKLDDLWKEFVEHS 134
BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE) HSP 1 Score: 110 bits (275), Expect = 5.740e-25 Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = -2 Query: 294 YFGRKPACTAATCADCGFGKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHS 524
++GRKPAC A C++CGFG GIP NC+AL + R+ GW+RFEDQ M DG+VHKKQQ+PQ G L DLWK FV HS
Sbjct: 205 HWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLDDLWKEFVEHS 281
BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5JF90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF90_9PHAE) HSP 1 Score: 110 bits (274), Expect = 6.420e-25 Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = -2 Query: 291 YFGRKPACTAATCADCGFGKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHSL 524
++GRKPAC A C++CGFGK GIP NC A+ ++ R+ W+RFEDQ M DG+VHKKQQ+PQ G L DLW F+AHS+
Sbjct: 458 FWGRKPACAAMKCSECGFGKPGGIPTNCTAIAKNRERVVAWIRFEDQTMPDGKVHKKQQLPQTGKLEDLWDEFMAHSV 535
BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE) HSP 1 Score: 110 bits (274), Expect = 9.260e-25 Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = -2 Query: 288 YFGRKPACTAATCADCGFGKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHSLL 524
++GRKPAC A C++CGFGK GIP NC A+ ++ R+ W+RFEDQ M DG+VHKKQQ+PQ G L DLW F+AHS +
Sbjct: 458 FWGRKPACAAMKCSECGFGKPGGIPTNCTAIAKNRERVVAWIRFEDQTMPDGKVHKKQQLPQTGKLEDLWDEFMAHSYM 536
BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5KXG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG9_9PHAE) HSP 1 Score: 108 bits (269), Expect = 3.750e-24 Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = -2 Query: 294 YFGRKPACTAATCADCGFGKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHS 524
++GRKPAC A C++CGFG GIP NC+AL + R+ GW+RF DQ M DG+VHKKQQ+PQ G LGDLW+ FV HS
Sbjct: 129 HWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGKVHKKQQLPQGGKLGDLWQEFVEHS 205
BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE) HSP 1 Score: 108 bits (269), Expect = 4.310e-24 Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = -2 Query: 294 YFGRKPACTAATCADCGFGKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHS 524
++GRKPAC A C++CGFG GIP NC+AL + R+ GW+RF DQ M DG+VHKKQQ+PQ G LGDLW+ FV HS
Sbjct: 471 HWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGKVHKKQQLPQGGKLGDLWQEFVEHS 547
BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE) HSP 1 Score: 108 bits (269), Expect = 4.550e-24 Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = -2 Query: 294 YFGRKPACTAATCADCGFGKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHS 524
++GRKPAC A C++CGFG GIP NC+AL + R+ GW+RF DQ M DG+VHKKQQ+PQ G LGDLW+ FV HS
Sbjct: 1095 HWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGKVHKKQQLPQGGKLGDLWQEFVEHS 1171
BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5KY26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY26_9PHAE) HSP 1 Score: 105 bits (261), Expect = 3.840e-23 Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = -2 Query: 294 YFGRKPACTAATCADCGFGKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHS 524
++G KPAC A C++C FG + IP NC+AL + R+ GW+RFEDQ M DG+VHKKQQ+PQ G LGDLWK FV HS
Sbjct: 183 HWGGKPACVAMECSECRFGNPDDIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQIPQAGKLGDLWKEFVEHS 259
BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5KI39_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI39_9PHAE) HSP 1 Score: 102 bits (254), Expect = 4.240e-23 Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = -2 Query: 294 YFGRKPACTAATCADCGFGKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHS 524
++GRKPAC A C + GFG GIP NC+AL + R+ GW+RFEDQ M DG+VHKKQQ+PQ G LGDLW V HS
Sbjct: 205 HWGRKPACVAMECPEYGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQLPQAGKLGDLWDEVVEHS 281
BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Match: A0A6H5KMG8_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG8_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 9.900e-13 Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = -2 Query: 279 GKHNGIPANCEALERHSHRLAGWVRFEDQKMADGQVHKKQQVPQQGPLGDLWKGFVAHSLLVSL 470
G IP NC+AL + R+ GW+RFEDQ M DG+VHKKQQ+ Q G LGDLW+ FV S V +
Sbjct: 233 GDSGSIPINCDALGSMADRVVGWLRFEDQVMEDGKVHKKQQLTQAGKLGDLWQEFVERSKKVDV 296 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.1002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig106.1002.1 >prot_C-linearis_contig106.1002.1 ID=prot_C-linearis_contig106.1002.1|Name=mRNA_C-linearis_contig106.1002.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=116bp MLHVVGLALPLGKLVVFHILVGRGANRERGENGQRGAAKQGKTDNEFGETback to top mRNA from alignment at C-linearis_contig106:428751..429275+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig106.1002.1 ID=mRNA_C-linearis_contig106.1002.1|Name=mRNA_C-linearis_contig106.1002.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=525bp|location=Sequence derived from alignment at C-linearis_contig106:428751..429275+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig106:428751..429275+ >mRNA_C-linearis_contig106.1002.1 ID=mRNA_C-linearis_contig106.1002.1|Name=mRNA_C-linearis_contig106.1002.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at C-linearis_contig106:428751..429275+ (Chordaria linearis ClinC8C monoicous)back to top |