mRNA_C-linearis_contig106.1001.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig106.1001.1
Unique NamemRNA_C-linearis_contig106.1001.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.1001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:395548..395886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size339
Cds size339
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927398.310385-CDS-C-linearis_contig106:395547..3958861622927398.310385-CDS-C-linearis_contig106:395547..395886Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 395548..395886 +
1690879677.0652542-CDS-C-linearis_contig106:395547..3958861690879677.0652542-CDS-C-linearis_contig106:395547..395886Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 395548..395886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.1001.1prot_C-linearis_contig106.1001.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig106 395548..395886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig106.1001.1

>prot_C-linearis_contig106.1001.1 ID=prot_C-linearis_contig106.1001.1|Name=mRNA_C-linearis_contig106.1001.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=113bp
MLLLVFSFLRLLSTRIVAFNARTILHLAVMVQSAQTFRCVPPDNRPKSTW
KTHGATNDLGGLLFAACSLGVQALMLYCSARLGFHYHRTAWVPAWFRIQY
ICTHMRHAPSWR*
back to top

mRNA from alignment at C-linearis_contig106:395548..395886+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig106.1001.1 ID=mRNA_C-linearis_contig106.1001.1|Name=mRNA_C-linearis_contig106.1001.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at C-linearis_contig106:395548..395886+ (Chordaria linearis ClinC8C monoicous)
ATGTTGTTGCTTGTTTTCTCCTTTCTTCGTTTGCTGTCAACTCGCATCGT
TGCTTTCAACGCGCGTACCATTCTACATCTCGCAGTGATGGTACAAAGCG
CACAGACATTTCGGTGTGTACCACCAGATAACCGACCGAAATCTACATGG
AAAACTCATGGTGCTACGAACGATTTGGGGGGCTTGCTTTTCGCCGCTTG
CAGTTTGGGGGTACAAGCCCTCATGCTGTATTGTTCGGCGCGTCTAGGCT
TCCACTACCACCGCACAGCCTGGGTGCCCGCGTGGTTTCGAATACAGTAT
ATATGTACTCACATGCGGCATGCGCCTTCGTGGCGATGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig106:395548..395886+

>mRNA_C-linearis_contig106.1001.1 ID=mRNA_C-linearis_contig106.1001.1|Name=mRNA_C-linearis_contig106.1001.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at C-linearis_contig106:395548..395886+ (Chordaria linearis ClinC8C monoicous)
ATGTTGTTGCTTGTTTTCTCCTTTCTTCGTTTGCTGTCAACTCGCATCGT
TGCTTTCAACGCGCGTACCATTCTACATCTCGCAGTGATGGTACAAAGCG
CACAGACATTTCGGTGTGTACCACCAGATAACCGACCGAAATCTACATGG
AAAACTCATGGTGCTACGAACGATTTGGGGGGCTTGCTTTTCGCCGCTTG
CAGTTTGGGGGTACAAGCCCTCATGCTGTATTGTTCGGCGCGTCTAGGCT
TCCACTACCACCGCACAGCCTGGGTGCCCGCGTGGTTTCGAATACAGTAT
ATATGTACTCACATGCGGCATGCGCCTTCGTGGCGATGAATGTTGTTGCT
TGTTTTCTCCTTTCTTCGTTTGCTGTCAACTCGCATCGTTGCTTTCAACG
CGCGTACCATTCTACATCTCGCAGTGATGGTACAAAGCGCACAGACATTT
CGGTGTGTACCACCAGATAACCGACCGAAATCTACATGGAAAACTCATGG
TGCTACGAACGATTTGGGGGGCTTGCTTTTCGCCGCTTGCAGTTTGGGGG
TACAAGCCCTCATGCTGTATTGTTCGGCGCGTCTAGGCTTCCACTACCAC
CGCACAGCCTGGGTGCCCGCGTGGTTTCGAATACAGTATATATGTACTCA
CATGCGGCATGCGCCTTCGTGGCGATGA
back to top