mRNA_C-linearis_contig106.1000.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig106.1000.1 vs. uniprot
Match: D7FSQ4_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSQ4_ECTSI) HSP 1 Score: 510 bits (1313), Expect = 5.440e-177 Identity = 265/331 (80.06%), Postives = 293/331 (88.52%), Query Frame = 3 Query: 183 LLLLRCLRIPLQ-ARAFI----VRTTADSIITWRGGSSTGVPAXXXXXXXXXXXXXXXEEEVMIGRGPQEAVRPFVPDLLKGRKALVTGGNRGIGEAITVALLKAGAQVCVMAGNKEAYTDMLERHDLDDSEGTGSVCWVKADLRVPAEAIAGAEKAVEWAGGSIDILVNNAGICVLEDFMDISSDSFDEVIAINTRAPLLVSQVCLEGMIKKKYGKIVNITSQSAVIATKAHAAYCASKAAMDGLLHGLVCDLSQHNIQVNNIAPTVAWSDMGIKTWGDPAKSQPMLDKTPVGRFVEPWEIANMVVFLSSDACTMCLGQTICVDGGYTCL 1160 LL L L +PLQ A++F+ TT+ + + WRGGSS A XXXXXX E +VMIGRGPQE VRPFVPDLL G++ALVTGGNRGIGEAITVAL+KAGA VCVMAGN+ AY DM+ERH DD+EGTG+V WV+ADLRVP+EAIAGA+KAV+WAGGS+DILVNNAGICVLEDFMDISSD+FDEVIAINTRAPLLVSQVCL+GMIK K GKIVNITSQSAVIATKAHA+YCASKAAMDGLLHGLVCDL+QHNIQVNNIAPTVAWSDMGIKTWGDPAKS+PML++TP+GRFVEPWEIANMVVFLSSDACTMCLGQTICVDGGYTCL Sbjct: 10 LLPLVVLLLPLQQAQSFVGGAVSTTTSSANLRWRGGSSVDAAASTGPGEXXXXXXGQEESDVMIGRGPQEPVRPFVPDLLSGKQALVTGGNRGIGEAITVALVKAGAHVCVMAGNEAAYRDMVERHGFDDTEGTGNVYWVQADLRVPSEAIAGAQKAVDWAGGSLDILVNNAGICVLEDFMDISSDTFDEVIAINTRAPLLVSQVCLQGMIKNKSGKIVNITSQSAVIATKAHASYCASKAAMDGLLHGLVCDLAQHNIQVNNIAPTVAWSDMGIKTWGDPAKSRPMLERTPIGRFVEPWEIANMVVFLSSDACTMCLGQTICVDGGYTCL 340
BLAST of mRNA_C-linearis_contig106.1000.1 vs. uniprot
Match: A0A835YTK4_9STRA (Putative short-chain dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTK4_9STRA) HSP 1 Score: 236 bits (601), Expect = 8.270e-71 Identity = 122/256 (47.66%), Postives = 171/256 (66.80%), Query Frame = 3 Query: 387 PFVPDLLKGRKALVTGGNRGIGEAITVALLKAGAQVCVMAGNKEAYTDMLERHDLDDSEGTGSVCWVKADLRVPAEAIAGAEKAVEWAGGSIDILVNNAGICVLEDFMDISSDSFDEVIAINTRAPLLVSQVCLEGMIKKKYGKIVNITSQSAVIATKAHAAYCASKAAMDGLLHGLVCDLSQHNIQVNNIAPTVAWSDMGIKTWGDPAKSQPMLDKTPVGRFVEPWEIANMVVFLSSDACTMCLGQTICVDGGYT 1154 PF P LL R+A+VTGGN GIG AIT AL+KAGA V+A +K + ML+ H+ GS +++ADL I+ + AV WA G +DILVNNAG+ +L + +++D+V+A+N RAP L++Q C GMI+++ GKI+NI+SQ+ I HAAYCASKAA+D L + + ++HNIQ N+I PTV ++MG + WG A +PM +TP+GRF EP E+ANMVV+L SDA + GQT+ ++GG T Sbjct: 8 PFRPTLLANRRAVVTGGNDGIGVAITCALVKAGASCAVVARSKAKFDAMLDTHEFLQ----GSADFIQADLESADATISAGKAAVAWADGHVDILVNNAGVALLGPLTEYGVEAWDKVMAVNARAPFLMAQACAPGMIEQRAGKIINISSQAGTIGIADHAAYCASKAAIDALTRVMTVEWAKHNIQANSIGPTVVMTEMGKRVWGG-AAGEPMRQRTPIGRFAEPDEVANMVVYLCSDASNILCGQTLLMEGGLT 258
BLAST of mRNA_C-linearis_contig106.1000.1 vs. uniprot
Match: D7G8H1_ECTSI (Similar to L-xylulose reductase (XR) (Dicarbonyl/L-xylulose reductase) n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G8H1_ECTSI) HSP 1 Score: 207 bits (528), Expect = 9.130e-60 Identity = 111/266 (41.73%), Postives = 165/266 (62.03%), Query Frame = 3 Query: 369 PQEAVRPFVPDLLKGRKALVTGGNRGIGEAITVALLKAGAQVCVMAGNKEAY---TDMLERHDLDDSEGTGSVCWVKADLRVPAEAIAGAEKAVEWAGGSIDILVNNAGICVLEDFMDISSDSFDEVIAINTRAPLLVSQVCLEGMIKK-KYGKIVNITSQSAVIATKAHAAYCASKAAMDGLLHGLVCDLSQHNIQVNNIAPTVAWSDMGIKTWGDPAKSQPMLDKTPVGRFVEPWEIANMVVFLSSDACTMCLGQTICVDGGYT 1154 P E P+ D+L G+ A+VTGG+ GIG AIT+ALL+AGA V V+A ++ Y +LE L + T ++ DL A +A EWAGG DILVNNAG+ + ++ S + +D + +N RAP +++Q C + MI + + GKIV+ +S +++ A HAAYC SKAA+ GL + + S+++I N + PT+ +DMG K WG+P K PM+D+TP+GRF EPWE+A+ VV+L S + + GQ + +DGG T Sbjct: 8 PAEPAFPWRSDMLAGKTAIVTGGSAGIGAAITIALLQAGASVAVLARSRSKYDKLVPLLEERKLPVDKTT----FISIDLSSTDAIRQAAVEANEWAGGCADILVNNAGVATIAPILEASVEDWDWTMNVNVRAPFIMAQECAKRMIARGQGGKIVSTSSTASLFALHDHAAYCTSKAAIQGLTKVMSAEWSKYDINCNTVGPTIVLTDMGAKAWGEPEKGDPMIDRTPLGRFAEPWEMAHGVVYLVSPSSSQMCGQMLLLDGGIT 269
BLAST of mRNA_C-linearis_contig106.1000.1 vs. uniprot
Match: UPI000402D86B (SDR family oxidoreductase n=1 Tax=Geminicoccus roseus TaxID=404900 RepID=UPI000402D86B) HSP 1 Score: 193 bits (490), Expect = 1.890e-54 Identity = 112/251 (44.62%), Postives = 152/251 (60.56%), Query Frame = 3 Query: 411 GRKALVTGGNRGIGEAITVALLKAGAQVCVMAGNKEAYTDMLERHDLDDSEGTGSVCWV-KADLRVPAEAIAGAEKAVEWAGGSIDILVNNAGICVLEDFMDISSDSFDEVIAINTRAPLLVSQVCLEGMIKKKYGKIVNITSQSAVIATKAHAAYCASKAAMDGLLHGLVCDLSQHNIQVNNIAPTVAWSDMGIKTWGDPAKSQPMLDKTPVGRFVEPWEIANMVVFLSSDACTMCLGQTICVDGGYTCL 1160 GRKALVTG +RGIG L AGA + +A + A + E G C V +ADL A++A+E A G+IDILVNNAG+ + E +D S + FDEVIAIN RAPLL++Q+ MI ++ GKI+NI+SQ+ VI HA Y ASK ++ + + +LS HNIQVN + PTV + MG K W DPA+ P L K P+GR +P E+A++++FL+S A + G I +DGGYT L Sbjct: 12 GRKALVTGASRGIGAEACRVLADAGADIVAVARDTAALAETKAA-----VEAKGRRCLVIEADLATVEGGRRAAQQALE-AWGTIDILVNNAGMGLAESVLDASMEHFDEVIAINLRAPLLMAQLLAPAMIAQRRGKIINISSQAGVIGLLEHATYAASKGGLNAMTKVMAAELSPHNIQVNTVCPTVIMTPMGEKHWSDPARLDPFLAKVPLGRVGQPIEVADLILFLASSASDLITGDDIMIDGGYTAL 256
BLAST of mRNA_C-linearis_contig106.1000.1 vs. uniprot
Match: UPI0013579E7C (SDR family oxidoreductase n=2 Tax=unclassified Geminicoccus TaxID=2623055 RepID=UPI0013579E7C) HSP 1 Score: 192 bits (488), Expect = 3.720e-54 Identity = 109/251 (43.43%), Postives = 157/251 (62.55%), Query Frame = 3 Query: 411 GRKALVTGGNRGIGEAITVALLKAGAQVCVMAGNKEAYTDMLERHDLDDSEGTGSVCWV-KADLRVPAEAIAGAEKAVEWAGGSIDILVNNAGICVLEDFMDISSDSFDEVIAINTRAPLLVSQVCLEGMIKKKYGKIVNITSQSAVIATKAHAAYCASKAAMDGLLHGLVCDLSQHNIQVNNIAPTVAWSDMGIKTWGDPAKSQPMLDKTPVGRFVEPWEIANMVVFLSSDACTMCLGQTICVDGGYTCL 1160 G+KA VTG ++GIG L AGA + +A +++ ++ D E G C V +ADL E A++A++ A G++DILVNNAGI E ++ S DSFD VIAIN RAPLL++Q+ GMI ++ GKI+NI+SQ+A+I HA Y ASK ++ + +V +LS HNIQVN I PTV + +G WGDPA+ P + K P+GR +P E+A++++FL+S A + G I +DGGYT + Sbjct: 12 GQKAFVTGASKGIGAEACRVLADAGADIVAVARDRDGLAEIKA-----DVEAKGRRCLVVQADLASVEEGRRAAKEALD-AWGTMDILVNNAGIGCGEPILEASMDSFDRVIAINLRAPLLLTQLLAPGMIAQRRGKIINISSQAAMIGLLGHATYSASKGGLNAMTKVMVAELSPHNIQVNTICPTVIMTPLGQAYWGDPARYDPFVAKVPLGRVGQPIEVADLILFLASPASDLITGDDIMIDGGYTAV 256
BLAST of mRNA_C-linearis_contig106.1000.1 vs. uniprot
Match: A0A3D3FNB8_9SPIR (Short-chain dehydrogenase n=2 Tax=unclassified Treponema TaxID=2638727 RepID=A0A3D3FNB8_9SPIR) HSP 1 Score: 192 bits (488), Expect = 4.070e-54 Identity = 110/248 (44.35%), Postives = 147/248 (59.27%), Query Frame = 3 Query: 408 KGRKALVTGGNRGIGEAITVALLKAGAQVCVMAGNKEAYTDMLERHDLDDSEGTGSVCWV-KADLRVPAEAIAGAEKAVEWAGGSIDILVNNAGICVLEDFMDISSDSFDEVIAINTRAPLLVSQVCLEGMIKKKYGKIVNITSQSAVIATKAHAAYCASKAAMDGLLHGLVCDLSQHNIQVNNIAPTVAWSDMGIKTWGDPAKSQPMLDKTPVGRFVEPWEIANMVVFLSSDACTMCLGQTICVDGG 1148 +G+K LVTG +GIG I ++ KAGA V N + + G CW ADL A A AE AV AGG IDILVNNAGI E +D+ +D IA+N RAP L ++V GMI++ YG IVNI+S + + HAAYCASK +DGL + +L H I+VN +APTV + MG + WGD AK+ P+ K P+GRF+EP E+ ++V+FL+S+A M G+TI +DGG Sbjct: 12 QGKKVLVTGATKGIGRDIALSFAKAGATVSATGRNAAELAGLA-----GEIAAAGGRCWTYPADLADAAACTAMAEAAVADAGG-IDILVNNAGISFPERIVDLDVTHWDTTIAVNLRAPALTARVVARGMIERGYGVIVNISSNACMAGIDEHAAYCASKFGLDGLTKVMAVELGPHGIRVNAVAPTVVLTSMGTQVWGDAAKADPVKAKIPLGRFLEPREVTDVVLFLASEAAAMIHGETILIDGG 253
BLAST of mRNA_C-linearis_contig106.1000.1 vs. uniprot
Match: A0A6G6X370_9HYPH (Glucose 1-dehydrogenase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6G6X370_9HYPH) HSP 1 Score: 191 bits (484), Expect = 1.440e-53 Identity = 107/253 (42.29%), Postives = 159/253 (62.85%), Query Frame = 3 Query: 405 LKGRKALVTGGNRGIGEAITVALLKAGAQVCVMAGNKEAYTDMLERHDLDDSEGTGSVC-WVKADLRVPAEAIAGAEKAVEWAGGSIDILVNNAGICVLEDFMDISSDSFDEVIAINTRAPLLVSQVCLEGMIKKKYGKIVNITSQSAVIATKAHAAYCASKAAMDGLLHGLVCDLSQHNIQVNNIAPTVAWSDMGIKTWGDPAKSQPMLDKTPVGRFVEPWEIANMVVFLSSDACTMCLGQTICVDGGYTCL 1160 L G+ ALVTG +GIG I L AGA + + G EA + R E G C + ADL I A A++ + G+IDILVNNAGI +++ ++ S D +D+ +A+N RAP L+++ MI ++ GKI+NI+SQ+ ++A HAAY ASK ++ L + C+ ++HNIQ N I PT+ + MG + WGDPAK +PMLD+TP+GRF +P E+A++V++L+S A + G+TI +DGG+T L Sbjct: 10 LTGKAALVTGATKGIGLDICKVLADAGADIAAV-GRDEAGLAEVSRA----VEALGRKCVTIAADLASAEGPIEAARTALQ-SFGTIDILVNNAGIALIDTLLEASIDDWDKTMAVNLRAPFLLAKELAPKMIAQRAGKIINISSQAGIVAIDGHAAYSASKGGLNMLTKVMTCEWARHNIQTNAICPTIILTPMGEQVWGDPAKGKPMLDRTPLGRFGKPQEVADLVLYLASHASDLVCGETILIDGGFTAL 256
BLAST of mRNA_C-linearis_contig106.1000.1 vs. uniprot
Match: M2Y1V9_GALSU (Short-chain dehydrogenase/reductase SDR n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y1V9_GALSU) HSP 1 Score: 190 bits (483), Expect = 2.010e-53 Identity = 101/250 (40.40%), Postives = 155/250 (62.00%), Query Frame = 3 Query: 405 LKGRKALVTGGNRGIGEAITVALLKAGAQVCVMAGNKEAYTDMLERHDLDDSEGTGSVCWVKADLRVPAEAIAGAEKAVEWAGGSIDILVNNAGICVLEDFMDISSDSFDEVIAINTRAPLLVSQVCLEGMIKKKYGKIVNITSQSAVIATKAHAAYCASKAAMDGLLHGLVCDLSQHNIQVNNIAPTVAWSDMGIKTWGDPAKSQPMLDKTPVGRFVEPWEIANMVVFLSSDACTMCLGQTICVDGGYT 1154 L G+KA+VTGGN+GIGE+I++AL GA + ++A + E+ +++++ C + A ++ + K + G +DILVNNAG+ LE ++ S D++D + +N +AP ++SQ +GMI++K GKI++I+S +A+ A HAAYC SKA + L + + +NIQ N IAPTV W++MG + WG P K +PML++ P RFV+P E+A + VFL+ M GQTI VDGG T Sbjct: 10 LVGKKAVVTGGNKGIGESISLALAGKGADIAIVARDTESAQNVIKK-----VRSERRFCKIYPTDLSDAASVRKSAKDILADMGRVDILVNNAGMSQLESLLEFSEDNWDRTMNVNLKAPFILSQEFAKGMIERKSGKIIHISSVAAIHAVDEHAAYCVSKAGLCMLTKMMALEWGPYNIQTNAIAPTVVWTEMGQRVWGAPEKHEPMLERIPAHRFVKPEEVAELTVFLAGPGSDMICGQTIAVDGGLT 254
BLAST of mRNA_C-linearis_contig106.1000.1 vs. uniprot
Match: UPI00041FB755 (glucose 1-dehydrogenase n=1 Tax=Propionicicella superfundia TaxID=348582 RepID=UPI00041FB755) HSP 1 Score: 190 bits (483), Expect = 2.010e-53 Identity = 108/252 (42.86%), Postives = 153/252 (60.71%), Query Frame = 3 Query: 405 LKGRKALVTGGNRGIGEAITVALLKAGAQVCVMAGNKEAYTDMLERHDLDDSEGTGSVCWVKADLRVPAEAIAGAEKAVEWAGGSIDILVNNAGICVLEDFMDISSDSFDEVIAINTRAPLLVSQVCLEGMIKKKYGKIVNITSQSAVIATKAHAAYCASKAAMDGLLHGLVCDLSQHNIQVNNIAPTVAWSDMGIKTWGDPAKSQPMLDKTPVGRFVEPWEIANMVVFLSSDACTMCLGQTICVDGGYTCL 1160 + G+KA+VTGG+RGIG+A V L +AGA+V ++ + A + E L + G V V D+ + A A A+ GG DI+VN AGI + ++S + +D+ IA+N AP +Q + MI +K GK+VNI+SQ+ VIA H AYCASK ++ L + + NIQVN +APTV + MG K WGDPAK+ PML K P+GRF +P E+A++V+FLSS A + G I +DGGYT + Sbjct: 9 VSGKKAIVTGGSRGIGQACAVVLAEAGAEVAIVGRDTAA---LAESEALVKAAGN-PVHVVTGDVLTASGARQAARDALAALGGVADIVVNCAGIARIAPLTELSQEDWDDTIAVNLTAPFAFTQEVVGPMIAQKSGKVVNISSQAGVIALDGHGAYCASKGGINMLTKMMALEWGPSNIQVNAVAPTVILTPMGTKVWGDPAKADPMLAKIPLGRFGQPVEVADLVLFLSSSASDLITGDVILIDGGYTAI 256
BLAST of mRNA_C-linearis_contig106.1000.1 vs. uniprot
Match: A0A7S2ZM87_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZM87_9RHOD) HSP 1 Score: 192 bits (488), Expect = 2.360e-53 Identity = 106/252 (42.06%), Postives = 164/252 (65.08%), Query Frame = 3 Query: 405 LKGRKALVTGGNRGIGEAITVALLKAGAQVCVMAGNKEAYTDMLERHDLDDSEGTGSVCWVKADLRVPAEAIAGAEKAVEWAGGSIDILVNNAGICVLEDFMDISSDSFDEVIAINTRAPLLVSQVCLEGMIKKKYGKIVNITSQSAVIATKAHAAYCASKAAMDGLLHGLVCDLSQHNIQVNNIAPTVAWSDMGIKTWGDPAKSQPMLDKTPVGRFVEPWEIANMVVFLSSDACTMCLGQTICVDGGYTCL 1160 LK RK +VTGG RGIG +I+ A ++AGA+V V+A + T+ + + L + ++ D++ EAI ++A+E G +D+LVNNAG+ ++++ +S +++D+ +A+N RAP +++Q GMI+++ GKIVN+TS HAAY ASKAA+D L + + ++NIQ N++APT+ +DMG K WGDP + PML + P GRF EP+E+A+ V+FL+SDA GQ +CVDGGYT + Sbjct: 76 LKDRKCVVTGGTRGIGFSISKAFMEAGAEVAVVA--TKPPTEEVTK-SLSELGRWHAIIGDLGDIK-STEAIG--DEALEVLG-KVDVLVNNAGVALVDELETLSVEAWDKTMAVNVRAPFMLAQKFSRGMIERRAGKIVNVTSVVGSRGVHLHAAYGASKAALDHLTKNMTVEWGKYNIQTNSVAPTIVMTDMGKKAWGDPERGDPMLARIPAGRFGEPFEVADAVLFLASDAANFISGQILCVDGGYTTI 320 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.1000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig106.1000.1 >prot_C-linearis_contig106.1000.1 ID=prot_C-linearis_contig106.1000.1|Name=mRNA_C-linearis_contig106.1000.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=341bp MRMLLQTPVLALQQLLLLRCLRIPLQARAFIVRTTADSIITWRGGSSTGVback to top mRNA from alignment at C-linearis_contig106:394459..397876- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig106.1000.1 ID=mRNA_C-linearis_contig106.1000.1|Name=mRNA_C-linearis_contig106.1000.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3418bp|location=Sequence derived from alignment at C-linearis_contig106:394459..397876- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig106:394459..397876- >mRNA_C-linearis_contig106.1000.1 ID=mRNA_C-linearis_contig106.1000.1|Name=mRNA_C-linearis_contig106.1000.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2046bp|location=Sequence derived from alignment at C-linearis_contig106:394459..397876- (Chordaria linearis ClinC8C monoicous)back to top |