mRNA_C-linearis_contig105.966.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig105.966.1
Unique NamemRNA_C-linearis_contig105.966.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig105.966.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 729 bits (1881), Expect = 6.350e-255
Identity = 382/698 (54.73%), Postives = 443/698 (63.47%), Query Frame = 1
Query:  109 CYDSWIGDGYCDNRNNNELCNYDGGDCCECTC--------DPGSSDDDYRCGQSND-FACIDPAAPCVDDDDITVDIVENCDYPAGIGNGWCDMGNNNEGCGYDGGDCCQCTCVAPENDNSW-------------------DDDFVCTDD-----------------------------------------------------ATYACIDPAAPCVDDDDITAEIVENCGYPNSIGNGWCDQDNNKPECNYDGGDCCECTCVAPENSWDDDWACSHNAGFACIDPAAACVDDDDITVDMVENCHDAGNIANGWCDHGNNKPECNYDGGDCCECTCDPGPDADDDYRCSPGAGYACVDPEAPCVDDDSVTVDMLEQCHWPSGIGNGWCDLGNNTPECNYDGGDCCECTCEVQDYYDDDSSYNGCREFACVDPDAECSDDDEITIDMFENCDYVLGIGDGYCHSGNNNAECGWDGGDCCYCTCESTSRYDDDWLCSTNGSGFNCKDESAPCFGEEPPTSDDDFASTYTDDYA-MSYEFVPWEQDGPLPTHEGAVEVGDKTEVGVTATGYDERPGWSAGMNGCGEDGGDGCEAANSRDGIASVVESRWSCGTSLVQGGGPCQVEYTFAEPQDIVDIQVAFWKANERTRTLDVYFNGEKTHTHESYAGSTFNTLGATANEVVTVMLEATGLTSNEWISLIEV 1956
            C  S +GDGYCD  NNNE+C YDGGDCCECTC         P   DDD+ C      FACIDPAAPCV+DDDIT D+VENC Y  G+G+GWC   NNNE CGYDGGDCC+CTCVAP  D+ W                   D    C DD                                                     +++ACIDPAAPCVDDD  T ++++NC YP  IGNGWCD DNN   C YDGGDCCECTC + E   DDDWAC +N  FAC+DP A CVDDD +T+DM+ENC  A  I +G+C    N PEC YDGGDCC CTC    D DDD+       +AC+DPEA CV+DD +TVDM   C +P  +G+GWCD GNN   C YDGGDCCECTCE +     D  Y  C EF+C+DP A C +DD++TIDM ENC YV GIG+G+C   NN  ECG+DGGDCC CTC+S   YDDD+ CS+    F+C+D SA CFGE   T  DDF+  + DDY  MSYEFV WE+   LPT   AVEVG KTEVGV+AT +D RPG S G  GCGE GG GC A N+RDGI S +ESRWSC TSLV   GPCQ+E+TFAEPQ+IVDIQVAFW  NER  TL+V+ NGE THTHESY   TFNTLG TA E  TVMLE+  L S+EWISL+EV
Sbjct:   54 CDTSELGDGYCDQDNNNEICGYDGGDCCECTCVACKKHGQSPWDDDDDWLCSSGGSGFACIDPAAPCVEDDDITADMVENCGYVRGLGDGWCHEENNNELCGYDGGDCCECTCVAPPADDDWXXXXXXXXYGACGGGFACIDPSAACVDDDEVTVGMVESCDTVSIGDGYCNMDNNNEACAYDGGDCCECTCEDTPNNRCGRWSSFACIDPAAPCVDDDSFTVDMIDNCEYPGGIGNGWCDVDNNNELCAYDGGDCCECTCESLE---DDDWACRNN--FACVDPNAPCVDDDSVTIDMLENCPWAVGIGDGYCSEDLNTPECAYDGGDCCACTCQN--DVDDDWX---XXXFACIDPEAACVNDDDITVDMFVNCEYPVNVGDGWCDQGNNNEACGYDGGDCCECTCENER----DEDYR-CMEFSCIDPSAPCVNDDDVTIDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSA--YDDDYSCSSEYGYFDCQDPSASCFGEGT-TGSDDFS--FHDDYQPMSYEFVSWEETDSLPTVVDAVEVGTKTEVGVSATAHDLRPGSSGGDVGCGEVGGLGCTATNTRDGIFSDIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLEVHVNGELTHTHESY-DDTFNTLGVTATEASTVMLESVALLSDEWISLLEV 730          
BLAST of mRNA_C-linearis_contig105.966.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 665 bits (1715), Expect = 3.820e-233
Identity = 329/534 (61.61%), Postives = 383/534 (71.72%), Query Frame = 1
Query:  361 MGNNNEGCGYDGGDCCQCTCVAPENDNSWDDDFVCTDDATYACIDPAAPCVDDDDITAEIVENCGYPNSIGNGWCDQDNNKPECNYDGGDCCECTCVAPENSWDDDWACSHNAGFACIDPAAACVDDDDITVDMVENCHDAGNIANGWCDHGNNKPECNYDGGDCCECTCDPGPDADDDYRCSPGAGYACVDPEAPCVDDDSVTVDMLEQCHWPSGIGNGWCDLGNNTPECNYDGGDCCECTCEVQDYYD--DDSSYNGCREFACVDPDAECSDDDEITIDMFENCDYVLGIGDGYCHSGNNNAECGWDGGDCCYCTCESTSRYDDDWLCSTNGSGFNCKDESAPCFGEEPPTSDDDFASTYTDDYAMSYEFVPWEQDGPLPTHEGAVEVGDKTEVGVTATGYDERPGWSAGMNGCGEDGGDGCEAANSRDGIASVVESRWSCGTSLVQGGGPCQVEYTFAEPQDIVDIQVAFWKANERTRTLDVYFNGEKTHTHESYAGSTFNTLGATANEVVTVMLEATGLTSNEWISLIEV 1956
            M NNN  C YDGGDCC+CTC    N+        C   + +ACIDP APCVDDD  T ++++NC YP  IG+GWCD+DNN   C YDGGDCCECTC   E S DDDW C +   FAC+DP A CVDDD +T+DM+ENC  +  I +G+C    N PEC YDGGDCC CTC+     DDD+ C     +AC+DPEA CVDDD +TVDM E C +P  IGNGWCD  NN   C YDGGDCCECTCE +  YD  DD  Y+ C EFAC+DP A C DDD+IT+DM ENC YV GIG+G+C   NN  ECG+DGGDCC CTCES   YDDD+ CS+    F+CKD +A CFGEEP T  DDF+   TDD  MSYEFVPWE+   LPT +GAVEVG KTEVGV++T +D RPG S+G  GCGE GG GC A N+RDGI S +ESRWSC T LV   GPCQ+E+TFAEPQ I+DIQVAFWK NERTRTL+V+ NGE THTHESYA +TFNTLG TA +V TVMLE+  L S+EWISLIEV
Sbjct:    1 MDNNNAACAYDGGDCCECTCEDTPNNK-------CGRWSGFACIDPEAPCVDDDSFTVDMIDNCDYPGGIGDGWCDEDNNNELCAYDGGDCCECTC---EGSEDDDWHCRN---FACVDPNAPCVDDDSVTIDMIENCSWSTGIGDGYCSENLNTPECAYDGGDCCSCTCES--PYDDDWGCM---WFACIDPEAACVDDDDITVDMFENCEYPVDIGNGWCDEANNIEACGYDGGDCCECTCEYESPYDWDDDWDYH-CMEFACIDPSAPCVDDDDITVDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCESP--YDDDYSCSSEYGSFDCKDPNASCFGEEP-TGSDDFS---TDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGMSSGDAGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVHINGEMTHTHESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEV 509          
BLAST of mRNA_C-linearis_contig105.966.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 632 bits (1631), Expect = 1.030e-218
Identity = 352/663 (53.09%), Postives = 426/663 (64.25%), Query Frame = 1
Query:    4 MKT-SHRWLGLLSAAVIASAVSVSAYHDYYSGSSSDCYDSWIGDGYCDNRNNNELCNYDGGDCCECTCDPGSSDDDYRCGQSNDFACIDPAAPCVDDDDITVDIVENCDYPAGIGNGWCDMGNNNEGCGYDGGDCCQCTCVAPENDNSWDDDFVCTDDATYACIDPAAPCVDDDDITA---EIV-ENCGYPN-SIGNGWCDQDNNKPECNYDGGDCCECTCVAPENSWDDDWACSHNAGFACIDPAAACVDDDDITVDMVENCHDAGNIANGWCDHGNNKPECNYDGGDCCECTCD-PGPDADDDYR-CSPGAGYACVDPEAPCVDDDSVTVDMLEQCHW-PSGIGNGWCDLGNNTPECNYDGGDCCECTCEVQDYYDDDSSYN-GCREFACVDPDAECSDDDEITIDMFENCDYVLGIGDGYCHSGNNNAECGWDGGDCCYCTCESTSRYDDDWLCSTNGSGFNCKDESAPCFGEEP--PTSDDDFASTYTDDYAMSYEFVPWEQDGPLPTHEGAVEVGDKTEVGVTATGYDERPGWSAGMNGCGEDGGDGCEAANSRDGIASVVESRWSCGTSLVQGGGPCQVEYTFAEPQDIVDIQVAFWKANERTRTLDVYFNGEKTHTHESYAGSTFNTLGATANEVVTVMLEATGLTSNEWISLIEV 1956
            MKT +H WLGLL A  I     VS   +  S +S+DC   +  DG CD  NNN  C YDGGDCC CTC     +D Y CG S  F C+DP+A CVDDDDI  + V+NC  P  IG+G CD  NN E C YDGGDCC CTC  P+ D + DD  +C + A +ACIDP APCV+DDD TA   E+V E CG     + +G CDQ NN  EC YDGGDCC CTC+      DD + C    GFACIDP+A C DDDD+TVD VENC    +I +G CD  NN+ EC+YDGGDCC CTC  P  D+ DD   CS    +AC+DP+APCV+DD +TVDM++ C   P   G+GWCD  NN  EC YD GDCC CTC        D +Y  G   F CVDP AEC DDD  +  + ++C     + +GYC   NN  EC +DGGDCC CTCE +   D    C+   SGF+C+D +APCF EEP  P  +DD       D +MSY+F+  ++D  L     AVEVG KT+V V+AT YD RPG S+G  GCGE GG+GC  AN+RDGI++  ESRWSC + +V GGGPCQ+EY F EPQDI DI+VAFW  +ER RTL+VYF+G    THESYAGSTFN+LG +A  + TVMLE+  L  NEWISLIEV
Sbjct:    1 MKTPTHGWLGLLIAVAI-----VSTRVEADSTTSNDCSPDFYRDGECDTHNNNAECEYDGGDCCSCTC----QNDTYDCGVSG-FDCVDPSAECVDDDDIGTETVQNCGDPWAIGDGNCDKDNNTEECDYDGGDCCSCTCQVPD-DGTGDDGSLCGESAVFACIDPDAPCVNDDDFTAFLPEVVKETCGGNIVHLADGDCDQINNNEECGYDGGDCCFCTCL------DDFYECGIR-GFACIDPSAECADDDDVTVDTVENCG-VRSIGDGQCDLDNNREECHYDGGDCCSCTCQVPDDDSGDDGSLCSESTVFACIDPDAPCVNDDDITVDMMDTCGGHPINFGDGWCDDDNNNKECGYDSGDCCSCTCV-------DGTYECGIVGFDCVDPSAECVDDDYPSTGVTDDCGNAGTVANGYCDFDNNKEECAYDGGDCCECTCEPSGLEDGSDSCT---SGFDCQDPTAPCFDEEPTLPEKEDD-------DGSMSYDFL--DEDDLLTVGTDAVEVGTKTDVSVSATAYDTRPGSSSGDVGCGEAGGNGCSPANTRDGISNETESRWSCASKIVPGGGPCQIEYVFGEPQDIEDIKVAFWMGDERVRTLEVYFDGTLHRTHESYAGSTFNSLGVSATGIGTVMLESVDLLENEWISLIEV 625          
BLAST of mRNA_C-linearis_contig105.966.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 637 bits (1642), Expect = 6.630e-217
Identity = 378/838 (45.11%), Postives = 445/838 (53.10%), Query Frame = 1
Query:  163 LCNYDGGDCCECTC-DPGSSDDDYRCGQSND-FACIDPAAPCVDDDDITVDIVENCDYPAGIGNGWCDMGNNNEGCGYDGGDCCQCTCVAPENDNSWDDDFVCTDDATYACIDPAAPCVDDDDITAEIVENCGYPNSIGNGWCDQDNNKPECNYDGGDCCECTCVAP----ENSWDDDWACSHNAGFACIDPAAACVDDDDITVDMVENCHDAGNIANGWCDHGNNKPECNYDGGDCCECTC-----------------DP-GPDADDD----------------------------------------------------YRC-----------------------------------------------SPGAG-------------------------------------------------YACVDPEAPCVDDDSVTVDMLEQCHWPSGIGNGWCDLGNNTPECNYDGGDCCECTCEVQDYYD--DDSSYNGCREFACVDPDAECSDDDEITIDMFENCDYVLGIGDGYCHSGNNNAECGWDGGDCCYCTCESTSRYDDDWLCSTNGSGFNCKDESAPCFGEEPPTSDDDFASTYTDDYAMSYEFVPWEQDGPLPTHEGAVEVGDKTEVGVTATGYDERPGWSAGMNGCGEDGGDGCEAANSRDGIASVVESRWSCGTSLVQGGGPCQVEYTFAEPQDIVDIQVAFWKANERTRTLDV------------------------------------------------------------------YFNGEKTHTHESYAGSTFNTLGATANEVVTVMLEATGLTSNEWISLIEV 1956
            L  YDGGDCCECTC +P   DDD+ C +    FACIDP A CVDDDDITV+I +NCD   G+G+GWCD  NNNE CGYDGGDCC+CTCV+P +D   DDD+ C +    ACIDP APCVDDDDITA +VE CG+   +G+GWCD+DNN   C YDGGDCCECTC AP    +  WDDDW     +GFACIDP A CV+DDDITVD+ E+C DA N+ +G+CD  NN   C    G C   +C                 DP  P  DDD                                                     RC                                               S G G                                                 +AC+DPEA CVDDD +TVDM+E C +P  +G+GWCD GNN   C YDGGDCCECTCE +  YD  DD  Y+ CREF+C+DP+A C  DD+IT+DMFENC YV GIG+G+C   NN  ECG+DGGDCC CTC+S   YDDD+LCS+    F+C+D +A CFGEE  T  DD++   TDD  MSYEFVPWE+   LPT +GAVEVG KTEVGV+AT +D R G S+G  GCGE GG GC A N+RDGI S +ESRWSC T LV   GPCQ+E+TFAEPQ I+DIQVAFWK NERTRTL+V                                                                  + NGE THTHESY  +TFN LG TA +V TVMLE+  L S+EWISLIEV
Sbjct:   18 LPGYDGGDCCECTCVNPWGDDDDWVCSKDGSGFACIDPDASCVDDDDITVEIAQNCDT-WGLGDGWCDQDNNNEICGYDGGDCCECTCVSPWDD---DDDWACRN--YNACIDPDAPCVDDDDITAVMVEECGWVRGVGDGWCDEDNNNELCGYDGGDCCECTCEAPPADDDWDWDDDWYGPCGSGFACIDPNAPCVNDDDITVDVDESC-DAVNMGDGYCDISNNIEAC----GACSWLSCTDTPNNKCGRWSGFACIDPEAPCVDDDSFTVDMIDNCDWGIGDGWCDEDNNNELCGDRVIEGWESIVNATAERVVRTTVVRCGVSVKWLDNELKEEIGERREVFKQFLSEAFEESWENVTVDMIENCSWSTGIGDGYCSENLNTPECATAPFVSLETVETRISLHLPLALRQNIYDDDWSCTRFACIDPEAACVDDDDITVDMIENCDYPLSVGDGWCDKGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYH-CREFSCIDPNAACVSDDDITVDMFENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSP--YDDDYLCSSEYGSFDCQDPNASCFGEES-TGSDDYS---TDDEPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVRATPSRLKTIEIQAVFFGHCVALDNTFATVRHREDGISTRLNAQHGGGARSKSFIFLTAQTFPTQVHINGEMTHTHESYTDATFNMLGVTATDVSTVMLESVALLSDEWISLIEV 837          
BLAST of mRNA_C-linearis_contig105.966.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 602 bits (1553), Expect = 3.890e-207
Identity = 340/675 (50.37%), Postives = 415/675 (61.48%), Query Frame = 1
Query:    1 MMKTSHRWLGLLSAAVIASAVSVSAYHDYYSGSSSDCYDSWIGDGYCDNRNNNELCNYDGGDCCECTC-DPGSSDDDYRCGQSN-DFACIDPAAPCVDDDDITVDIVENCDYPAGIGNGWCDMGNNNEGCGYDGGDCCQCTCVAPENDNSWDDDFVCTDDATYACIDPAAPCVDDDDITAEIVENCGYPNSIGNGWCDQDNNKPECNYDGGDCCECTCVAPENSWDDDW------------------ACSHNAGFACIDPAAACVDDDDITVDMVENCHDAGNIANGWCDHGNNKPECNYDGGDCCECTCDPGPDADDDYRCSPGAGYACVDPEAPCVDDDSVTVDMLEQCHWPSGIGNGWCDLGNNTPECNYDGGDCCECTCEVQDYYDDDSSYNGCREFACVDPDAECSDDDEITIDMFENCDYVLGIGDGYCHSGN--NNAECGWDGGDCCYCTCESTSRYDDDWLCSTNGSGFNCKDESAPCFGEEPPTSDDDFASTYTDDYA-MSYEFVPWEQDGPLPTHEGAVEVGDKTEVGVTATGYDERPGWSAGMNGCGEDGGDGCEAANSRDGIASVVESRWSCGTSLVQGGGPCQVEYTFAEPQDIVDIQVAFWKANERTRTLDVYFNGEKTHTHESYAGSTFNTLGATANEVVTVMLEATGLTSNEWISLIEV 1956
            M K S R LG+L AA I S+V               C++   GDGYC  +NNN  C YDGGDCCECTC +P   DD++ C +    FACIDP APCVDDDDIT++I +NC   + +GNG+CD  NNNE CGYD GDCC+CTCV+P +D+ W   +  +D + +ACIDPAAPCVDDDD+T ++VENCGY   +G+GWCD  NN   C YDGGDCCECTCVAP  +  DDW                  AC    GFACIDP AACV+DDDITV M               D  +NK                          C                       DM+E C +P G+G+G+C+  NN   C YDGGDCC CTC  Q+ +DDD +   C  FAC+DP+A C +DD+IT+DMF NC+Y + IG+G+            G+DGGDCC CTC++   +DDD+ CS+  +  +CKD +A CFGE   T  DDF  T+ DDY   SYEFV WE+   LPT   AVEVG KTEVGV+AT +D RP  S+   GCG+ GG GC A N+RDGI S +ESRWSC T LV   G CQ+E++FAEPQ++VDIQVAFWK NERTRTL V+ NGE THTHESYA STFNTLG TA E  TVMLE+  L S+EWISL+EV
Sbjct:    1 MTKHSSRLLGVLGAAAILSSVGA-------------CWEDGFGDGYCQLQNNNAECGYDGGDCCECTCQNPWGDDDEWFCSKDGYGFACIDPDAPCVDDDDITIEIAQNC-VTSDLGNGYCDEDNNNEICGYDFGDCCECTCVSPWDDDDW---YCSSDGSGFACIDPAAPCVDDDDVTIDMVENCGYVRGLGDGWCDDWNNNELCGYDGGDCCECTCVAPPAN--DDWDXXXXXXXXXXXXXXXXGACG--GGFACIDPNAACVNDDDITVGM---------------DTPSNK--------------------------CGWRXXXXXXXXXXXXXXXXXXXXDMIENCEYPWGVGDGYCNQQNNNELCAYDGGDCCSCTC--QNDFDDDWA---CTTFACIDPEAACVNDDDITVDMFVNCEYPVDIGNGWLRWRRLLRVHMRGYDGGDCCSCTCQNAWDWDDDYSCSSEYNSLDCKDPTASCFGEGT-TGSDDF--TFHDDYQPTSYEFVHWEETESLPTVIDAVEVGTKTEVGVSATAHDVRPRSSSDDVGCGQVGGLGCTATNTRDGIVSDIESRWSCATILVPDEGACQIEFSFAEPQNVVDIQVAFWKGNERTRTLWVHVNGELTHTHESYADSTFNTLGVTATEASTVMLESVALLSDEWISLLEV 605          
BLAST of mRNA_C-linearis_contig105.966.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 535 bits (1379), Expect = 1.140e-182
Identity = 274/481 (56.96%), Postives = 335/481 (69.65%), Query Frame = 1
Query:  526 ITAEIVENCGYPNSI-GNGWCDQDNNKPECNYDGGDCCECTCVAPENSWDDDWACSHN-AGFACIDPAAACVDDDDITVDMVENCHDAGNIANGWCDHGNNKPECNYDGGDCCECTCD--PGPDADDDYRCSPGAGYACVDPEAPCVDDDSVTVDMLEQCHWPSGIGNGWCDLGNNTPECNYDGGDCCECTCEVQDYYDDDSSYNGCREFACVDPDAECSDDDEITIDMFENCDYVLGIGDGYCHSGNNNAECGWDGGDCCYCTCESTSRYDDDWLCSTNGSGFNCKDESAPCFGEEPPTSDDDFASTYTDDYAMSYEFVPWEQDGPLPTHEGAVEVGDKTEVGVTATGYDERPGWSAGMNGCGEDGGDGCEAANSRDGIASVVESRWSCGTSLVQGGGPCQVEYTFAEPQDIVDIQVAFWKANERTRTLDVYFNGEKTHTHESYAGSTFNTLGATANEVVTVMLEATGLTSNEWISLIEV 1956
            + A  + + G  +++ G+G+C   NN  EC YDGGDCCECTC  P+   D  W CS N +GFAC+DP A C  +D +TV+  + C D  ++ +GWCD  NN   C YDGGDCCECTC+     D D+D   + G G+AC+DP APCV+DD +TVD+ E C    G+G+G+CD+ NN   C YDGGDCCECTCE        +   G   FAC+DP A C DDD +T+DM +NCDY+  +G+G+C   NNN  C +DGGDCC CTCES   ++DD+ CS+    FNCKD +A CFGEE  T  DDF+   TDD  MSYEFVPWE+   LPT +GAVEVG KTEVGV++T +D RPG     +GCGE GG GC AAN+RDGI S +ESRWSC T LV   GPCQ+E+TFAEPQ IVDIQVAFWK NERTRTL+VY NGE THTHESYA +TFNTLG TA +V TVMLE+  L S+EWISLIEV
Sbjct:   21 VAANSLSSSGCWDALYGDGYCTPPNNNAECGYDGGDCCECTCQNPQGG-DHHWICSKNGSGFACVDPDAPCYAEDGVTVEASQEC-DFWDLGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACGEGFACIDPSAPCVNDDDITVDVDESCD-AVGMGDGYCDMDNNNAACAYDGGDCCECTCEPN------NKCGGRSGFACIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESA--WNDDYTCSSEHGTFNCKDPNASCFGEET-TGSDDFS---TDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEV 482          
BLAST of mRNA_C-linearis_contig105.966.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 484 bits (1246), Expect = 1.590e-161
Identity = 257/480 (53.54%), Postives = 306/480 (63.75%), Query Frame = 1
Query:  670 DDDWACSHNAGFACIDPAAACVDDDDITVDMVENCHDAGNIANGWCDHGNNKPECNYDGGDCCECTCDPGPDADDDYRCSPGAGYACVDPEAPCVDDDSVTVDMLEQCHWPSGIGNGWCDLGNNTPECNYDGGDCCECTCEVQDYYD--DDSSYNGCREFACVDPDAECSDDDEITIDMFENCDYVLGIGDGYCHSGNNNAECGWDGGDCCYCTCESTSRYDDDWLCSTNGSGFNCKDESAPCFGEEPPTSDDDFASTYTDDYAMSYEFVPWEQDGPLPTHEGAVEVGDKTEVGVTATGYDERPGWSAGMNGCGEDGGDGCEAANSRDGIASVVESRWSCGTSLVQGGGPCQVEYTFAEPQDIVDIQVAFWKANERTRTLDV-------------------------------------------------YFNGEKTHTHESYAGSTFNTLGATANEVVTVMLEATGLTSNEWISLIEV 1956
            DDDW C +   FAC+DP A CVDDD +TVDM+ENC  +  I +G+C    N PEC                  DDD+ C+    +AC+DPEA CVDDD +TVDM E C +   +G+GWCD GNN   C YDGGDCCECTCE +  YD  DD  Y+ CREF+C+DP+A C  DD+IT+DMFENC YV GIG+G+C   NN  ECG+DGGDCC CTC+S   YDDD+LCS+    F+C+D +A CFGEE  T  DD++   TDD  MSYEFVPWE+   LPT +GAVEVG KTEVGV+AT +D R G S+G  GCGE GG GC A N+RDGI S +ESRWSC T LV   GPCQ+E+TFAEPQ I+DIQVAFWK NERTRTL+V                                                 + NGE THTHESYA +TFN LG TA +V TVMLE+  L S+EWISLIEV
Sbjct:    5 DDDWHCRN---FACVDPNAPCVDDDSVTVDMIENCSWSTGIGDGYCSENLNTPECEVGV-------------YDDDWSCT---RFACIDPEAACVDDDDITVDMFENCDYALSVGDGWCDEGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYH-CREFSCIDPNAACVSDDDITVDMFENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSP--YDDDYLCSSEYGSFDCQDPNASCFGEES-TGSDDYS---TDDEPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVRATPSRLKTIEITSRLFWLLCCPRQHLRDCGARSKSFIFLTAQTFPTQVHINGEMTHTHESYADATFNMLGVTATDVSTVMLESVALLSDEWISLIEV 458          
BLAST of mRNA_C-linearis_contig105.966.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 400 bits (1027), Expect = 2.520e-132
Identity = 189/312 (60.58%), Postives = 226/312 (72.44%), Query Frame = 1
Query:  172 YDGGDCCECTCDPGSSDDDYRCGQSND-FACIDPAAPCVDDDDITVDIVENCDYPAGIGNGWCDMGNNNEGCGYDGGDCCQCTCVAPENDNSWDDDFVCTDDATYACIDPAAPCVDDDDITAEIVENCGYPNSIGNGWCDQDNNKPECNYDGGDCCECTC--VAPENSWDDDWACSHNAGFACIDPAAACVDDDDITVDMVENCHDAGNIANGWCDHGNNKPECNYDGGDCCECTCDPGPDADDDYRCSPGAGYACVDPEAPCVDDDSVTVDMLEQCHWPSGIGNGWCDLGNNTPECNYDGGDCCECTCEVQ 1098
            +DGGDCCECTC     DDDY C  ++  FAC+DP APCVDDDDIT++   NC +P   G+GWCD  NNNE CGYDGGDCC+CTCV     N+WDDD+ C   A  ACIDP+APCVDDDD+T ++VENCGY  S+GNGWCD++NN   C YDGGDCCECTC  +  ++  DD +      GFACIDP A CV+DDDIT+D+VENC D+  + NG+CD  NN   C YDGGDCCECTC+  P+      C   +G+AC+DPEAPCVD+DS TVDM+E C +P   GNGWCD  NN  EC YDGGDCCECTCEV+
Sbjct:    6 FDGGDCCECTC-VSVYDDDYSCSSTDSGFACVDPTAPCVDDDDITIEQALNC-FPREFGDGWCDQENNNEICGYDGGDCCECTCV-----NAWDDDYSCA--ANSACIDPSAPCVDDDDVTVDMVENCGYVGSVGNGWCDEENNNEGCGYDGGDCCECTCQPLDTDDGTDDYFQNGCGNGFACIDPNAPCVNDDDITLDIVENC-DSVAVGNGFCDMDNNNEACAYDGGDCCECTCEDQPN----QECGRWSGFACIDPEAPCVDEDSFTVDMVESCKYPGSFGNGWCDEDNNIEECAYDGGDCCECTCEVR 303          
BLAST of mRNA_C-linearis_contig105.966.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 374 bits (961), Expect = 2.200e-122
Identity = 189/309 (61.17%), Postives = 224/309 (72.49%), Query Frame = 1
Query: 1030 LGNNTPECNYDGGDCCECTCEVQDYYDDDSSYNGCREFACVDPDAECSDDDEITIDMFENCDYVLGIGDGYCHSGNNNAECGWDGGDCCYCTCESTSRYDDDWLCSTNGSGFNCKDESAPCFGEEPPTSDDDFASTYTDDYAMSYEFVPWEQDGPLPTHEGAVEVGDKTEVGVTATGYDERPGWSAGMNGCGEDGGDGCEAANSRDGIASVVESRWSCGTSLVQGGGPCQVEYTFAEPQDIVDIQVAFWKANERTRTLDVYFNGEKTHTHESYAGSTFNTLGATANEVVTVMLEATGLTSNEWISLIEV 1956
            +  N     YDGGDCCECTCE      DD  Y  C +F+C+DP+A C +DD+IT+DMF+NC YV GIGDG+C S NN   CG+DGGDCC CTCES   +DDD+ C  +   F+CKD SA CFGEE    + D ++  + D    YEFVPWEQ  PLPT + AVEVG KTEV V+AT +D R G S+G  GCGE GG+GC A N+RDGI++ +ESRWSC   L+   GPCQ+E++FAEPQ+IVDIQVAFWK NER RTL+VY NGE THTHESYA STFNTLG TANE  TVMLE+  L SNEWISLIEV
Sbjct:    1 MARNVVISGYDGGDCCECTCEG-----DDDDYK-CMQFSCIDPNAPCVNDDDITVDMFDNCGYVSGIGDGWCDSNNNKEACGYDGGDCCSCTCESV--WDDDYTCGEDAF-FDCKDPSAACFGEETAMGNGDDSTGRSSDPDTEYEFVPWEQTEPLPTVDDAVEVGTKTEVSVSATAHDVRAGRSSGEVGCGEAGGNGCAANNARDGISTEIESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTLEVYVNGELTHTHESYADSTFNTLGVTANEANTVMLESVSLLSNEWISLIEV 300          
BLAST of mRNA_C-linearis_contig105.966.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 349 bits (895), Expect = 2.260e-106
Identity = 204/423 (48.23%), Postives = 253/423 (59.81%), Query Frame = 1
Query:  172 YDGGDCCECTCDPGSSDDDYRCGQSNDFACIDPAAPCVDDDDITVDIVENCD----YPAGIGNGWCDMGNNNEGCGYDGGDCCQCTCVAPENDNSWDDDFVCTDDATYACIDPAAPCVDDDDITAEIVENC----GYPNSIGNGWCDQDNNKPECNYDGGDCCECTCVAPENSWDDDWACSHNAGFACIDPAAACVDDDDITVDMVENCHDAGNIANGWCDHGNNKPECNYDGGDCCECTCDPGPDADDDYRCSPGAGYACVDPEAPCVDDDSVTVDMLEQCHWPSGIGNGWCDLGNNTPECNYDGGDCCECTCEVQDYYDDDSSYNGCREFACVDPDAECSDDDEITIDMFENCDYVLGIGDGYCHSGNNNAECGWDGGDCCYCTCE-STSRYDDDWLCSTNGSGFNCKDESAPCFGEEPPT 1413
            YDGGDCCECTC   S    + CG    FACIDP+A CVDDD+IT DI E+C+    Y A IG+G+C   NNNE C YDGGDCC+CTCV         D F       +ACIDP+A CVDDD+ITA+I E+C    GY   +GNG+C++ NN  EC+YD GDCC+CTC    +   D ++C     FAC+DP A CVDDD +T  M E+C    N  +G+C+  NN  +C YDGGDCCECTC    D   ++ C+    +AC+DP APCVDDD VT D LE C     +G+G+CD  NN   C+YDGGDCCECTC       D    + C +F C+DP A C D+  IT+DM+E CD  L +GD  C   NN   C +D GDCC  TC   +S   D+  CS+    F C D   P F    PT
Sbjct:   19 YDGGDCCECTCVDAS----FTCGYGG-FACIDPSAACVDDDNITEDIAESCNDGGGYVASIGDGFCSDENNNEVCDYDGGDCCECTCV---------DAFYPCGYVAFACIDPSAACVDDDNITADIAESCHDGGGYVAGLGNGYCNEANNIEECDYDAGDCCQCTCGIESDDLSD-FSC---VDFACVDPNAPCVDDD-VTEGMFEDCF---NFGDGFCNDYNNNEQCGYDGGDCCECTCVV--DWSAEFGCTE---FACIDPTAPCVDDDDVTADALENCMIEY-LGDGYCDTYNNNEICDYDGGDCCECTCGSDST--DVLVGSDCSDFVCIDPTASCFDE-SITVDMYEYCDVEL-LGDSICQPSNNFEVCDYDFGDCCEATCGVDSSGTLDELSCSS----FACVD---PRFVTPSPT 402          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JM92_9PHAE6.350e-25554.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F4_ECTSI3.820e-23361.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTT4_9PHAE1.030e-21853.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXR2_9PHAE6.630e-21745.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI87_ECTSI3.890e-20750.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4F9_ECTSI1.140e-18256.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB04_9PHAE1.590e-16153.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0S4_ECTSI2.520e-13260.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S3_ECTSI2.200e-12261.17LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KJK5_9PHAE2.260e-10648.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:563215..569855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.6
Seed ortholog evalue1.9e-44
Seed eggNOG ortholog2880.D7FX77
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E9KF@1,2SFXU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons12
Model size1956
Cds size1956
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.966.1prot_C-linearis_contig105.966.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig105 563215..569855 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927397.5739179-CDS-C-linearis_contig105:563214..5633641622927397.5739179-CDS-C-linearis_contig105:563214..563364Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 563215..563364 -
1690879676.5906956-CDS-C-linearis_contig105:563214..5633641690879676.5906956-CDS-C-linearis_contig105:563214..563364Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 563215..563364 -
1622927397.5876944-CDS-C-linearis_contig105:564856..5653891622927397.5876944-CDS-C-linearis_contig105:564856..565389Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 564857..565389 -
1690879676.6055334-CDS-C-linearis_contig105:564856..5653891690879676.6055334-CDS-C-linearis_contig105:564856..565389Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 564857..565389 -
1622927397.6017697-CDS-C-linearis_contig105:565723..5657781622927397.6017697-CDS-C-linearis_contig105:565723..565778Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 565724..565778 -
1690879676.6144183-CDS-C-linearis_contig105:565723..5657781690879676.6144183-CDS-C-linearis_contig105:565723..565778Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 565724..565778 -
1622927397.6147735-CDS-C-linearis_contig105:565905..5661011622927397.6147735-CDS-C-linearis_contig105:565905..566101Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 565906..566101 -
1690879676.623236-CDS-C-linearis_contig105:565905..5661011690879676.623236-CDS-C-linearis_contig105:565905..566101Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 565906..566101 -
1622927397.6238568-CDS-C-linearis_contig105:566389..5663991622927397.6238568-CDS-C-linearis_contig105:566389..566399Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 566390..566399 -
1690879676.632113-CDS-C-linearis_contig105:566389..5663991690879676.632113-CDS-C-linearis_contig105:566389..566399Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 566390..566399 -
1622927397.6329465-CDS-C-linearis_contig105:566790..5669671622927397.6329465-CDS-C-linearis_contig105:566790..566967Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 566791..566967 -
1690879676.6404836-CDS-C-linearis_contig105:566790..5669671690879676.6404836-CDS-C-linearis_contig105:566790..566967Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 566791..566967 -
1622927397.6417527-CDS-C-linearis_contig105:567372..5674271622927397.6417527-CDS-C-linearis_contig105:567372..567427Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 567373..567427 -
1690879676.6490362-CDS-C-linearis_contig105:567372..5674271690879676.6490362-CDS-C-linearis_contig105:567372..567427Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 567373..567427 -
1622927397.6505196-CDS-C-linearis_contig105:567724..5678911622927397.6505196-CDS-C-linearis_contig105:567724..567891Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 567725..567891 -
1690879676.6582084-CDS-C-linearis_contig105:567724..5678911690879676.6582084-CDS-C-linearis_contig105:567724..567891Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 567725..567891 -
1622927397.660399-CDS-C-linearis_contig105:568267..5684951622927397.660399-CDS-C-linearis_contig105:568267..568495Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 568268..568495 -
1690879676.6667807-CDS-C-linearis_contig105:568267..5684951690879676.6667807-CDS-C-linearis_contig105:568267..568495Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 568268..568495 -
1622927397.671525-CDS-C-linearis_contig105:568905..5689601622927397.671525-CDS-C-linearis_contig105:568905..568960Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 568906..568960 -
1690879676.6754537-CDS-C-linearis_contig105:568905..5689601690879676.6754537-CDS-C-linearis_contig105:568905..568960Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 568906..568960 -
1622927397.6814048-CDS-C-linearis_contig105:569154..5693151622927397.6814048-CDS-C-linearis_contig105:569154..569315Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 569155..569315 -
1690879676.684392-CDS-C-linearis_contig105:569154..5693151690879676.684392-CDS-C-linearis_contig105:569154..569315Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 569155..569315 -
1622927397.7214582-CDS-C-linearis_contig105:569686..5698551622927397.7214582-CDS-C-linearis_contig105:569686..569855Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 569687..569855 -
1690879676.6932333-CDS-C-linearis_contig105:569686..5698551690879676.6932333-CDS-C-linearis_contig105:569686..569855Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 569687..569855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig105.966.1

>prot_C-linearis_contig105.966.1 ID=prot_C-linearis_contig105.966.1|Name=mRNA_C-linearis_contig105.966.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=652bp
MMKTSHRWLGLLSAAVIASAVSVSAYHDYYSGSSSDCYDSWIGDGYCDNR
NNNELCNYDGGDCCECTCDPGSSDDDYRCGQSNDFACIDPAAPCVDDDDI
TVDIVENCDYPAGIGNGWCDMGNNNEGCGYDGGDCCQCTCVAPENDNSWD
DDFVCTDDATYACIDPAAPCVDDDDITAEIVENCGYPNSIGNGWCDQDNN
KPECNYDGGDCCECTCVAPENSWDDDWACSHNAGFACIDPAAACVDDDDI
TVDMVENCHDAGNIANGWCDHGNNKPECNYDGGDCCECTCDPGPDADDDY
RCSPGAGYACVDPEAPCVDDDSVTVDMLEQCHWPSGIGNGWCDLGNNTPE
CNYDGGDCCECTCEVQDYYDDDSSYNGCREFACVDPDAECSDDDEITIDM
FENCDYVLGIGDGYCHSGNNNAECGWDGGDCCYCTCESTSRYDDDWLCST
NGSGFNCKDESAPCFGEEPPTSDDDFASTYTDDYAMSYEFVPWEQDGPLP
THEGAVEVGDKTEVGVTATGYDERPGWSAGMNGCGEDGGDGCEAANSRDG
IASVVESRWSCGTSLVQGGGPCQVEYTFAEPQDIVDIQVAFWKANERTRT
LDVYFNGEKTHTHESYAGSTFNTLGATANEVVTVMLEATGLTSNEWISLI
EV
back to top

mRNA from alignment at C-linearis_contig105:563215..569855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig105.966.1 ID=mRNA_C-linearis_contig105.966.1|Name=mRNA_C-linearis_contig105.966.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6641bp|location=Sequence derived from alignment at C-linearis_contig105:563215..569855- (Chordaria linearis ClinC8C monoicous)
ATGATGAAGACCTCTCACCGATGGCTGGGCCTCCTGAGTGCCGCGGTCAT CGCGTCCGCCGTGAGCGTTTCTGCCTACCACGACTACTACAGCGGCAGCA GCTCGGATTGCTACGATAGCTGGATCGGGGATGGGTACTGCGACAACAGG AACAACAACGAGCTGTGCAGTGAGTGTTTGAGGGCCTTCCAAAGGTCAAA CCTTGCCTATCTAGACTGCAGTCCGTGTAAGAATTTCCTCGCTGAAGAAG CAGCCCTGAGTGCGTTGCAACATTCAAGAGAGAGAGAGGTCGATCTCGAA AGCAAGCCCCCCGCGATCGTTGGTTGTTGTTGATGTTTGTCTTGGCCAAC TGCAGCAATTGCGGTGAGAACTATTGTATATTCTCTGCTAATTGAGCAAG CAAAAAAATGCGTATGCTCCATTCTTACGAAATCATGGAGCCCAAGCTAT GGCCGAATACACTACACTTACCTTGTCTTTCCTGGGGTTGTTTCGCAACT AACAATTCCCGTGTCCGTTCCTGGTACCTCATTTTTCCAGACTACGACGG CGGAGATTGCTGCGAGTGTACGTGTGACCCAGGCTCTTCCGACGACGACT ACCGGTGCGGCCAGTCCAATGACTTCGCCTGCATCGACCCTGCCGCACCG TGCGTGGACGACGACGACATCACCGTCGATATAGTGGAGAACTGCGATTA CGTGAGTCGATCAAAATCGACACTAGAGGCACCACCTTGTGTTTAAGCCG TGGAAATCAATGCCTTGCAAACTCAGCACGTGAATTAGTTCCACACGGAC GGGATAATTTTACCCAAGCTGCACAAATGTTTGTACTCGTCCAACCTCAA AATCCTGAGCGTGTTCCATTGTTGCTTCTTGCCCTGGTATGGCAGCCTGC AGGGATCGGCAATGGATGGTGCGACATGGGCAACAACAACGAAGGATGCG GTGAGCACGTGTTGTGAATAAGTGGTGTTTAATCTCTTTTGTTTTATAAT TTGGCAAAGCGAATACACTGGAAACTTATGTCGATTCCGTCATGCCGGGC AAACCGTAGGAGGCGGACTTTGTGCAACCGGGACAGATTCGAGTCAAGCC TGCTGGCTGGAGTGCATGGCACCCAAGCGATTGACTGGGAGAACTCGGTT TGCACCCATATGCGCGTCCGAGAGCTCAGATTCCATCGGATGTGTTGCTG AATTTGTTTTGCGCCAATTCTGCTTCCGCGAGCGAGAGTCTTCCGACTAC GACGGCGACAGAAACCACACGAACAACTTCCGTGCGAACTAAGCACTGAT CTCATATTCCACGCATTGTTCTACCGTGTTTTCTCTCGCTTTCTTTCTCT TTTGGGGAAGGCTACGACGGAGGAGATTGCTGCCAATGCACATGTGTCGC GCCCGAGAACGATAACTCGTGGGACGACGACTTCGTGTGCACCGACGACG CCACGTACGCCTGCATCGACCCCGCCGCACCGTGTGTGGACGACGACGAC ATCACCGCCGAAATCGTGGAGAACTGCGGCTACCCGAACTCGATCGGCAA CGGCTGGTGTGACCAGGACAATAACAAGCCCGAGTGCAGTGAGTGCGCGC TTGCTTCCCGGAAGCGAACACCTGCGATTTGTTTTTCCAATTTTTGAACG GAAAATTCAACAACAGCAGTTGACAAGAGCGAGATTCAGCTTACTGATAT CCCCCCGCTACATGCAGCATTGCATCTACCGTCTATCTAAGCGAAGCATA ACGCGAGGCTGCAGACGACACCCCTCGGCACCGTCTTTTGGCGGCTAGCT AGATAATTATTCACCTTTGTCAGCGGCCTCGGCTGCTTCCTTCTATCGTA GGCTGCGATGTAGATGCCATTGCCACGGGAAGCTCGAACACGAAGAATTG ATTTCTTCCATGCACTACCCACTGCTCGTACGTTGTTTGCTGCAACGTCA ACCTTTTTCTCAAGACTACGACGGCGGAGATTGCTGCGAATGTACGTGTG TCGCCCCAGAAAACTCGTGGGACGATGACTGGGCATGCTCTCACAACGCC GGCTTCGCCTGCATCGACCCCGCCGCTGCATGTGTGGACGACGACGACAT TACCGTTGACATGGTGGAGAACTGCCACGATGTGAGCCGACGCGATGGAT AGCTTTGCCCGGCTGTTCAGGGCTATTCGTGCATGCTTTATGCTCGAAAG CAGAGCGCAGTAGTGCAGTGCACGGACTCCGTACATGACGTGTAAGGGCA AGCGTACGTGAGAGGACACCGTACGTGAGAGGTGCGCGGTGCCCTCCCGA GCGGCTGGGCTGAAGCATCGATTCTCAGTTTACATCTGGCTTGACGTTCC CTTTTTCTCCCGTCGCTGCTTCTCTGTGTGTTTCTCTGTCGGGTTTGTTT CTCGTTCTCGTTCTCGCTCGGCTCAAAGGCCGGAAACATCGCAAACGGCT GGTGCGACCACGGGAACAACAAGCCTGAGTGCAGTAAGTCAAGTGTTTGT GTTTGTGTGTGTCCCTGAGCGTGACCTTGAAACGCGCAAGACCCGGTTGG CTTTCTTTTGTGTCAAGAACAGACATGATGCAGCGCATTCCAAACCATAA ACCCTTCGAATGTTGACGTAGTTTCTATTCATCATACGTCAAAACGTGGC GATCAATGAACGGTGTTTTTCTGGAAACCAAGTACGGAACATGTAAACAA CATCCTTGGATGTGGCGTGTCGTAGCGTTCGTTCTAGGGCCGGCCGGTCC TCCGAACTGCGACGTTGGAGGCAATAAGTTAAGTTGCCCTCGGAAGATTC CCCCGATATAATCCCAAACCCTAACCAGACTTTACCTTGAAATGATCCGG CTGTTATCGGTGTTTGTGCGTGCATTCGTTTTTTCAAGACTACGATGGCG GGGACTGCTGCGAATGTACGTGCGACCCCGGCCCGGATGCCGACGACGAC TACCGCTGCAGCCCCGGCGCCGGATACGCCTGCGTCGACCCGGAGGCGCC GTGCGTGGACGACGACAGCGTCACCGTCGACATGCTGGAGCAATGCCACT GGCCTTCGGGCATCGGTAAGCGCAGCAGCACTAAACGAGCATCTCTGCTC TCCACGTTTCTGAACTCCAAGTTGATCACGCACCGTAGGCTGGATGTAGG GTCGGGATTTTGGTTTCAGCTGGACCCCGAACTGATCGCTCACATCGTTT AACCGTGGCTAACTAGAGTGCCGGTGCAGCGGCGTACTTTGGCGAAATCA AATTACGTCCAGCAGACCCAATCAATAAGCCGCCCAGTGAATGCAGCAGC TGTGTGCTGAAACATTTTCCCTCTTGTCTATTTCGTTTGGTGCTCTCGTT TCGTCTATTCTGTATTTTTCCGCGTTCGTTCGTCTTTCGGGGTGGCTTCG TCCTCTCCCGCGCGGTGGTTTTCGACACCTCTCCCCGTCTTCTCGCGGTC TCTCAGGCAACGGATGGTGGGTCACGGTGTGCAAAGGCCTAGGCGGTTGA CATCCAAGGAAAAGTTGGGGTTGCGCGCTGGCTCTAAAGCCGGCGTTTTC TTGGTGCTTGGTGTGCTATAATAGGCCATCTCGCCAGCTCTCTCGGTCTG ATACAGAAGAAGGCTCCCGCGCTGTGCCTTCTTGCCATTGCTCGCGTACG TAAACTACTGTATTATCTCGACGCTGGCCGATACAGCACTGCTTCCACCC TCGCTGCATCCTTACCTGCCTGGGTCTGCACGCACGCGTGGCTTTCCGCA ACAGGTGCGACCTCGGAAACAACACGCCCGAGTGCAACTACGATGGGGGC GACTGCTGCGAATGTACGTGCGAGGTCCAAGACTACTACGACGACGACTC TAGCTACAACGGCTGCCGGGAGTTCGCCTGCGTCGACCCCGACGCAGAGT GCTCCGACGACGACGAAATCACGATCGACATGTTCGAGAACTGCGATTAC GTGAGTCGTGCAGGGTCCGAAAGCGTGGCACGGCGGTGGCGGTGAGTTGT GCCCATGGCGTCTTCTCACTTTGCTGCGCGCACTCTTCACGCCTACCTTC GTTTGACCCCTTTTTCATGGTCTGCAGGTGCTTGGCATCGGCGACGGTTA CTGCCACTCTGGCAACAACAACGCGGAGTGCGGTAAGAATCCCCCTTTCC ATTGACTACGATTTTCGTGGTTCCCGTATGATGTTGATTGTTGAGGCTTA AGAGTGCGAGACAGCCGGAGGAACGCCAAGCACAACAAAAGTTTAAGCAT TTCAACACATCGAAAAGAGCACCCGACCCAGATTACGCGTAGGAGGACGC GGGTCACCGCCGTATTCCCATTTTCTTGGCTACCCCGGACGGCGATGCCG GACAAACCCTTCCTTCGCCAGCCAATCAACCATGGAATACTTATTGCTCT TGTTGGATCCCGTGCTTACCCTCCGAAACCGTCGCTTGCGCTTGCCGTTC ACAATGAATGCACAAGGCTGGGACGGCGGAGATTGCTGCTACTGCACATG CGAGTCAACCAGCCGCTACGACGACGACTGGCTGTGCAGCACCAACGGCT CCGGCTTCAACTGCAAGGACGAGAGCGCCCCGTGCTTCGGCGAGGAGCCC CCGACCAGCGACGACGACTTTGCGAGCACCTACACCGACGACTACGCGAT GTCGTACGAGTTCGTCCCCTGGGAGCAGGACGGACCCCTCCCTACCCACG AAGGCGCCGTCGAGGTTGGTGACAAGACCGAGGTCGGAGTAACGGCCACC GGTTACGACGAACGCCCCGGCTGGAGCGCCGGCATGAACGGCTGCGGCGA GGACGGGGGTGACGGCTGCGAAGCGGCTAACTCCCGCGACGGCATTGCCA GCGTGGTCGAGTCCAGGTGGTCGTGCGGTACGAGCCTCGTGCAAGGCGGA GGTCCGTGCCAGGTCGAGTACACGTTCGCCGAGCCCCAGGACATCGTGGA CATCCAGGTCGCCTTCTGGAAGGCGAACGAGCGGACCCGTACGCTGGACG TGAGTCAGAGAGAAAAAACGCAAAACTTCGAGTCTGACGCTGAAAGAAGT TTTTCAGCTTCTGCATTGCCCTTCTTGTTGAGAGCAGCACGATAAGCTGG GATGGTGCGCATGAAGGAGTTCGGAGAGCATGTTGGAATCGAATGCCAGC ATAGCAAAAGAGAGAGAGCGAGTAGTAGCCCGCCTTGTGGCGTGTTGGAT TGTCGGAACTGTCCGCTGTTCAGATAGCCGATCATACGCTCCAACACATC GTGTTGTGCTGATCGTGAGCACCTGTCCCCGAAACTCGCCCACAGGTCTA CATCGACGGTGAAATGACCATGGCGCACGAATCCTACGCTGGGCCGACCT TCAACGAGCTTGGTGTAGTTGCCAACGGGGTCACCACGGTCATGCTAGAG TCCAGCGGGTCCACGGCAAGCGAGTGGATCAGCCTCATCGAGGTCAGTGG AAACACGGAAAGTCGTATCGGCTCTGGTATGCGCTCAAATAGAATGTTTC TCGCAACTCTGTGACGAAAGGTCTGATATTCGTTCTTCCCCTGCCACCTG GTCGGAGTAATCAATTCCTCATTGGTTATTTTCTATGTACTAGAAGGAGA ATTGGTCGGTCTCACTTGGATCGATGCCGTCATCATACTCTCTGAACATT CTTCAACACCGACGTCGAAGCATGCCTTGGGCAATGGACACGCTGCTGTC CCTTTTCTTTGGTCGAGGAAACAACTGGGTCCCAACAGAGAAGATTCCTG CCACTTGCTCAGCGCCAATGTGTCGACTACCTTCCTCTCCTCACATCATG ATTTCCACATGTGCCTGCCTGCGCTGCTTCTTCTTCAACCAACGCAGGTG CTTATCTTCGTCAAGCCCGACGAGGAACCCCTCCCTACCGTCGACGGTGC CGTCGAGGTCGGCACCAAGACCGAGGTTGGGGTGTCGGCCACCGCTCACG ACGTGCGACCCGGCGGGAGCAGCAACATGAATGGCTGCGGCGTGGAAGGA GACGATGGCTGCGAAGGGCCCCTCACACGTGACGGCATCGCCAACGAGAT CGAGTCCAGGTGGTCTTGCGCCCCGAAGCTCGTGGAGGGCGGAGGTCCCT GCCGGATCGAGTACACGTTCGCCGCGCCCCAGCAAGTCGTGGACATCCAG GTCGCCTTCCGGAAGGCGGACGAGCGGACCCGTACGCTGGACGTGAGTGA GAGCTTGAAGACGTGTAGCTCCCAGCCGGTGCTCGAACATGTAGAATAAT CGTCTTTCCATGTTCCCGCCGAGGTATGAGCGGCACGGTTGGCTCGAATG GCCCGCATGAAGAAGTTGGGAACGCCCTCTACTAACGGGTGGAAGCGAAA GGCAAGAGGAGTCTTCCACCCGCGTTTCGACGTTATTCGTTGACGAAGCT TCCTCTCTTTAGCAACTCGAACACGGGGTAGGACCAAACCATCATGCTGT GCTGATGTTGAGTCATTTGCCCCCCAAACTCATCCACGCAGGTCTACTTT AACGGTGAAAAGACTCACACGCACGAATCCTACGCTGGGTCGACCTTCAA CACGCTTGGTGCGACTGCCAACGAGGTCGTCACGGTCATGCTGGAGGCCA CCGGGCTCACGTCAAATGAGTGGATCAGCCTCATCGAGGTC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig105:563215..569855-

>mRNA_C-linearis_contig105.966.1 ID=mRNA_C-linearis_contig105.966.1|Name=mRNA_C-linearis_contig105.966.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3912bp|location=Sequence derived from alignment at C-linearis_contig105:563215..569855- (Chordaria linearis ClinC8C monoicous)
ATGATGAAGACCTCTCACCGATGGCTGGGCCTCCTGAGTGCCGCGGTCAT
CGCGTCCGCCGTGAGCGTTTCTGCCTACCACGACTACTACAGCGGCAGCA
GCTCGGATTGCTACGATAGCTGGATCGGGGATGGGTACTGCGACAACAGG
AACAACAACGAGCTGTGCAATGATGAAGACCTCTCACCGATGGCTGGGCC
TCCTGAGTGCCGCGGTCATCGCGTCCGCCGTGAGCGTTTCTGCCTACCAC
GACTACTACAGCGGCAGCAGCTCGGATTGCTACGATAGCTGGATCGGGGA
TGGGTACTGCGACAACAGGAACAACAACGAGCTGTGCAACTACGACGGCG
GAGATTGCTGCGAGTGTACGTGTGACCCAGGCTCTTCCGACGACGACTAC
CGGTGCGGCCAGTCCAATGACTTCGCCTGCATCGACCCTGCCGCACCGTG
CGTGGACGACGACGACATCACCGTCGATATAGTGGAGAACTGCGATTACA
CTACGACGGCGGAGATTGCTGCGAGTGTACGTGTGACCCAGGCTCTTCCG
ACGACGACTACCGGTGCGGCCAGTCCAATGACTTCGCCTGCATCGACCCT
GCCGCACCGTGCGTGGACGACGACGACATCACCGTCGATATAGTGGAGAA
CTGCGATTACCCTGCAGGGATCGGCAATGGATGGTGCGACATGGGCAACA
ACAACGAAGGATGCGCCTGCAGGGATCGGCAATGGATGGTGCGACATGGG
CAACAACAACGAAGGATGCGGCTACGACGGAGGAGATTGCTGCCAATGCA
CATGTGTCGCGCCCGAGAACGATAACTCGTGGGACGACGACTTCGTGTGC
ACCGACGACGCCACGTACGCCTGCATCGACCCCGCCGCACCGTGTGTGGA
CGACGACGACATCACCGCCGAAATCGTGGAGAACTGCGGCTACCCGAACT
CGATCGGCAACGGCTGGTGTGACCAGGACAATAACAAGCCCGAGTGCAGC
TACGACGGAGGAGATTGCTGCCAATGCACATGTGTCGCGCCCGAGAACGA
TAACTCGTGGGACGACGACTTCGTGTGCACCGACGACGCCACGTACGCCT
GCATCGACCCCGCCGCACCGTGTGTGGACGACGACGACATCACCGCCGAA
ATCGTGGAGAACTGCGGCTACCCGAACTCGATCGGCAACGGCTGGTGTGA
CCAGGACAATAACAAGCCCGAGTGCAACTACGACGGCGGAGATTGCTGCG
AATGTACGTGTGTCGCCCCAGAAAACTCGTGGGACGATGACTGGGCATGC
TCTCACAACGCCGGCTTCGCCTGCATCGACCCCGCCGCTGCATGTGTGGA
CGACGACGACATTACCGTTGACATGGTGGAGAACTGCCACGATACTACGA
CGGCGGAGATTGCTGCGAATGTACGTGTGTCGCCCCAGAAAACTCGTGGG
ACGATGACTGGGCATGCTCTCACAACGCCGGCTTCGCCTGCATCGACCCC
GCCGCTGCATGTGTGGACGACGACGACATTACCGTTGACATGGTGGAGAA
CTGCCACGATGCCGGAAACATCGCAAACGGCTGGTGCGACCACGGGAACA
ACAAGCCTGAGTGCAGCCGGAAACATCGCAAACGGCTGGTGCGACCACGG
GAACAACAAGCCTGAGTGCAACTACGATGGCGGGGACTGCTGCGAATGTA
CGTGCGACCCCGGCCCGGATGCCGACGACGACTACCGCTGCAGCCCCGGC
GCCGGATACGCCTGCGTCGACCCGGAGGCGCCGTGCGTGGACGACGACAG
CGTCACCGTCGACATGCTGGAGCAATGCCACTGGCCTTCGGGCATCGACT
ACGATGGCGGGGACTGCTGCGAATGTACGTGCGACCCCGGCCCGGATGCC
GACGACGACTACCGCTGCAGCCCCGGCGCCGGATACGCCTGCGTCGACCC
GGAGGCGCCGTGCGTGGACGACGACAGCGTCACCGTCGACATGCTGGAGC
AATGCCACTGGCCTTCGGGCATCGGCAACGGATGGCAACGGATGGTGCGA
CCTCGGAAACAACACGCCCGAGTGCAACTACGATGGGGGCGACTGCTGCG
AATGTACGTGCGAGGTCCAAGACTACTACGACGACGACTCTAGCTACAAC
GGCTGCCGGGAGTTCGCCTGCGTCGACCCCGACGCAGAGTGCTCCGACGA
CGACGAAATCACGATCGACATGTTCGAGAACTGCGATTACGTGCGACCTC
GGAAACAACACGCCCGAGTGCAACTACGATGGGGGCGACTGCTGCGAATG
TACGTGCGAGGTCCAAGACTACTACGACGACGACTCTAGCTACAACGGCT
GCCGGGAGTTCGCCTGCGTCGACCCCGACGCAGAGTGCTCCGACGACGAC
GAAATCACGATCGACATGTTCGAGAACTGCGATTACGTGCTTGGCATCGG
CGACGGTTACTGCCACTCTGGCAACAACAACGCGGAGTGCGGTGCTTGGC
ATCGGCGACGGTTACTGCCACTCTGGCAACAACAACGCGGAGTGCGGCTG
GGACGGCGGAGATTGCTGCTACTGCACATGCGAGTCAACCAGCCGCTACG
ACGACGACTGGCTGTGCAGCACCAACGGCTCCGGCTTCAACTGCAAGGAC
GAGAGCGCCCCGTGCTTCGGCGAGGAGCCCCCGACCAGCGACGACGACTT
TGCGAGCACCTACACCGACGACTACGCGATGTCGTACGAGTTCGTCCCCT
GGGAGCAGGACGGACCCCTCCCTACCCACGAAGGCGCCGTCGAGGTTGGT
GACAAGACCGAGGTCGGAGTAACGGCCACCGGTTACGACGAACGCCCCGG
CTGGAGCGCCGGCATGAACGGCTGCGGCGAGGACGGGGGTGACGGCTGCG
AAGCGGCTAACTCCCGCGACGGCATTGCCAGCGTGGTCGAGTCCAGGTGG
TCGTGCGGTACGAGCCTCGTGCAAGGCGGAGGTCCGTGCCAGGTCGAGTA
CACGTTCGCCGAGCCCCAGGACATCGTGGACATCCAGGTCGCCTTCTGGA
AGGCGAACGAGCGGACCCGTACGCTGGACGCTGGGACGGCGGAGATTGCT
GCTACTGCACATGCGAGTCAACCAGCCGCTACGACGACGACTGGCTGTGC
AGCACCAACGGCTCCGGCTTCAACTGCAAGGACGAGAGCGCCCCGTGCTT
CGGCGAGGAGCCCCCGACCAGCGACGACGACTTTGCGAGCACCTACACCG
ACGACTACGCGATGTCGTACGAGTTCGTCCCCTGGGAGCAGGACGGACCC
CTCCCTACCCACGAAGGCGCCGTCGAGGTTGGTGACAAGACCGAGGTCGG
AGTAACGGCCACCGGTTACGACGAACGCCCCGGCTGGAGCGCCGGCATGA
ACGGCTGCGGCGAGGACGGGGGTGACGGCTGCGAAGCGGCTAACTCCCGC
GACGGCATTGCCAGCGTGGTCGAGTCCAGGTGGTCGTGCGGTACGAGCCT
CGTGCAAGGCGGAGGTCCGTGCCAGGTCGAGTACACGTTCGCCGAGCCCC
AGGACATCGTGGACATCCAGGTCGCCTTCTGGAAGGCGAACGAGCGGACC
CGTACGCTGGACGTCTACTTTAACGGTGAAAAGACTCACACGCACGAATC
CTACGCTGGGTCGACCTTCAACACGCTTGGTGCGACTGCCAACGAGGTCG
TCACGGTCATGCTGGAGGCCACCGGGCTCACGTCAAATGAGTGGATCAGC
CTCATCGAGGTCGTCTACTTTAACGGTGAAAAGACTCACACGCACGAATC
CTACGCTGGGTCGACCTTCAACACGCTTGGTGCGACTGCCAACGAGGTCG
TCACGGTCATGCTGGAGGCCACCGGGCTCACGTCAAATGAGTGGATCAGC
CTCATCGAGGTC
back to top