mRNA_C-linearis_contig105.965.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig105.965.1
Unique NamemRNA_C-linearis_contig105.965.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig105.965.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 588 bits (1515), Expect = 1.410e-202
Identity = 322/608 (52.96%), Postives = 372/608 (61.18%), Query Frame = 1
Query:  199 NNNELCGYDGGDCCSCTCERDSGDSYQCNNDFACIDPAAPCVDDDDVTVDLVENCDYIQGISNGWCDMGNNNAGCGYDGGDCCSCTCVPPGDSRDDDYACSDNASDYACIDPEAACVNDDDVTVDIVENC-YPGSIGNGYCDQRNNKAVCNYDGGDCCECTCVSEGGDDDRACSQNDGFACIDPAAECVDDDDITIDMVENCHDVSRRDGCLSLTVQGYSCVAVPGLRACRCVNTSVRESCGVLPSGWNEALCLHRCFSILAPGIPFSSAPVAASPSSVSFGAGNIGNGWCDEGNNKAECDYDGGDCCECTCV--AGEEFDDD--YRCTESTGYACIDPEAPCVDDDSVTVDMIDLCDWPMGIDLHVASRNRCDIGNNIPECNYDGGDCCYCTCDGGDNDDWLCSASGSGFDCKDDSAPCFGEEPPTSDDDFASTYTDDYAMSYEFVPWEQDGPLPTYEGAVEVGDKTEVGVTATGYDERPGRSAVQNGCGEDGGDGCEAANSRDGIASVVESRWSCGTSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKADERIRTLGVYFNGEKTHTHESYAGSTFNTLGATANEVVTVMLEATGLTSNEWISLIEV 2007
            NNN  C YDGGDCC CTCE    +     + FACIDP APCVDDD  TVD+++NCDY  GI +GWCD  NNN  C YDGGDCC CTC     S DDD+ C +    +AC+DP A CV+DD VT+D++ENC +   IG+GYC +  N   C YDGGDCC CTC S   DDD  C     FACIDP A CVDDDDIT+DM ENC                Y                                                   PV            +IGNGWCDE NN   C YDGGDCCECTC   +  ++DDD  Y C E   +ACIDP APCVDDD +TVDM++ C +  GI         CD  NN  EC YDGGDCC CTC+   +DD+ CS+    FDCKD +A CFGEEP T  DDF+   TDD  MSYEFVPWE+   LPT +GAVEVG KTEVGV++T +D RPG S+   GCGE GG GC A N+RDGI S +ESRWSC T LV+  GPCQIE+TFAEPQ I+DIQVAFWK +ER RTL V+ NGE THTHESYA +TFNTLG TA +V TVMLE+  L S+EWISLIEV
Sbjct:    3 NNNAACAYDGGDCCECTCEDTPNNKCGRWSGFACIDPEAPCVDDDSFTVDMIDNCDYPGGIGDGWCDEDNNNELCAYDGGDCCECTCEG---SEDDDWHCRN----FACVDPNAPCVDDDSVTIDMIENCSWSTGIGDGYCSENLNTPECAYDGGDCCSCTCESPY-DDDWGCMW---FACIDPEAACVDDDDITVDMFENCE---------------Y---------------------------------------------------PV------------DIGNGWCDEANNIEACGYDGGDCCECTCEYESPYDWDDDWDYHCME---FACIDPSAPCVDDDDITVDMVENCGYVSGI-----GNGWCDRNNNKEECGYDGGDCCSCTCESPYDDDYSCSSEYGSFDCKDPNASCFGEEP-TGSDDFS---TDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGMSSGDAGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVHINGEMTHTHESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEV 509          
BLAST of mRNA_C-linearis_contig105.965.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 592 bits (1527), Expect = 3.860e-201
Identity = 348/712 (48.88%), Postives = 406/712 (57.02%), Query Frame = 1
Query:  172 VADGYCDSRNNNELCGYDGGDCCSCTCER---------DSGDSYQCNND---FACIDPAAPCVDDDDVTVDLVENCDYIQGISNGWCDMGNNNAGCGYDGGDCCSCTCVPPGDSRDDD----------------YACSDNA-----------------------------------------------------------SDYACIDPEAACVNDDDVTVDIVENC-YPGSIGNGYCDQRNNKAVCNYDGGDCCECTCVSEGGDDDRACSQNDGFACIDPAAECVDDDDITIDMVENCH-DVSRRDGCLSLTVQGYSCVAVPG-LRACRCVNTSVRESCGVLPSGWN---------EALCLHRCFSILAPGIPFSSAPVAASPSSVSFGAGNIGNGWCDEGNNKAECDYDGGDCCECTCVAGEEFDDDYRCTESTGYACIDPEAPCVDDDSVTVDMIDLCDWPMGIDLHVASRNRCDIGNNIPECNYDGGDCCYCTCDGGDNDDWLCSASGSGFDCKDDSAPCFGEEPPTSDDDFASTYTDDYA-MSYEFVPWEQDGPLPTYEGAVEVGDKTEVGVTATGYDERPGRSAVQNGCGEDGGDGCEAANSRDGIASVVESRWSCGTSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKADERIRTLGVYFNGEKTHTHESYAGSTFNTLGATANEVVTVMLEATGLTSNEWISLIEV 2007
            + DGYCD  NNNE+CGYDGGDCC CTC           D  D + C++    FACIDPAAPCV+DDD+T D+VENC Y++G+ +GWC   NNN  CGYDGGDCC CTCV P    DDD                +AC D +                                                           S +ACIDP A CV+DD  TVD+++NC YPG IGNG+CD  NN  +C YDGGDCCECTC S   DDD AC  N  FAC+DP A CVDDD +TIDM+ENC   V   DG  S  +    C    G   AC C N         +   W          EA C++    I          PV            N+G+GWCD+GNN   C YDGGDCCECTC    E D+DYRC E   ++CIDP APCV+DD VT+DM++ C +  GI         CD  NN  EC YDGGDCC CTC    +DD+ CS+    FDC+D SA CFGE   T  DDF+  + DDY  MSYEFV WE+   LPT   AVEVG KTEVGV+AT +D RPG S    GCGE GG GC A N+RDGI S +ESRWSC TSLV   GPCQIE+TFAEPQ+IVDIQVAFW  +ER+ TL V+ NGE THTHESY   TFNTLG TA E  TVMLE+  L S+EWISL+EV
Sbjct:   59 LGDGYCDQDNNNEICGYDGGDCCECTCVACKKHGQSPWDDDDDWLCSSGGSGFACIDPAAPCVEDDDITADMVENCGYVRGLGDGWCHEENNNELCGYDGGDCCECTCVAP--PADDDWXXXXXXXXYGACGGGFACIDPSAACVDDDEVTVGMVESCDTVSIGDGYCNMDNNNEACAYDGGDCCECTCEDTPNNRCGRWSSFACIDPAAPCVDDDSFTVDMIDNCEYPGGIGNGWCDVDNNNELCAYDGGDCCECTCESLE-DDDWACRNN--FACVDPNAPCVDDDSVTIDMLENCPWAVGIGDGYCSEDLNTPECAYDGGDCCACTCQND--------VDDDWXXXXFACIDPEAACVNDD-DITVDMFVNCEYPV------------NVGDGWCDQGNNNEACGYDGGDCCECTCE--NERDEDYRCME---FSCIDPSAPCVNDDDVTIDMVENCGYVSGI-----GNGWCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPSASCFGEGT-TGSDDFS--FHDDYQPMSYEFVSWEETDSLPTVVDAVEVGTKTEVGVSATAHDLRPGSSGGDVGCGEVGGLGCTATNTRDGIFSDIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLEVHVNGELTHTHESY-DDTFNTLGVTATEASTVMLESVALLSDEWISLLEV 730          
BLAST of mRNA_C-linearis_contig105.965.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 553 bits (1425), Expect = 1.530e-187
Identity = 327/688 (47.53%), Postives = 397/688 (57.70%), Query Frame = 1
Query:   52 MMKTSNRWLGLLGAAVIASAVSVSAYHDYSDSSTGCYDLWVADGYCDSRNNNELCGYDGGDCCSCTCERDSGDSYQ--CNND---FACIDPAAPCVDDDDVTVDLVENCDYIQGISNGWCDMGNNNAGCGYDGGDCCSCTCVPPGDSRDDDYACSDNASDYACIDPEAACVNDDDVTVDIVENC-YPGSIGNGYCDQRNNKAVCNYDGGDCCECTCVSEGGDDD------------------RACSQNDGFACIDPAAECVDDDDITIDMVENCHDVSRRDGCLSLTVQGYSCVAVPGLRACRCVNTSVRESCGVLPSGWNEALCLHRCFSILAPGIPFSSAPVAASPSSVSFGAGNIGNGWCDEGNNKAECDYDGGDCCECTCVAGEEFDDDYRCTESTGYACIDPEAPCVDDDSVTVDMIDLCDWPMGIDLHVASRNRCDIGNN---------IPECNYDGGDCCYCTCDGGDN--DDWLCSASGSGFDCKDDSAPCFGEEPPTSDDDFASTYTDDYA-MSYEFVPWEQDGPLPTYEGAVEVGDKTEVGVTATGYDERPGRSAVQNGCGEDGGDGCEAANSRDGIASVVESRWSCGTSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKADERIRTLGVYFNGEKTHTHESYAGSTFNTLGATANEVVTVMLEATGLTSNEWISLIEV 2007
            M K S+R LG+LGAA I S+V              C++    DGYC  +NNN  CGYDGGDCC CTC+   GD  +  C+ D   FACIDP APCVDDDD+T+++ +NC     + NG+CD  NNN  CGYD GDCC CTCV P D  DDD+ CS + S +ACIDP A CV+DDDVT+D+VENC Y   +G+G+CD  NN  +C YDGGDCCECTCV+   +DD                   AC    GFACIDP A CV+DDDIT+ M                                     +    CG     W                       +     +  +  G +G+G+C++ NN   C YDGGDCC CTC    +FDDD+ CT    +ACIDPEA CV+DD +TVDM   C++P+            DIGN          +    YDGGDCC CTC    +  DD+ CS+  +  DCKD +A CFGE   T  DDF  T+ DDY   SYEFV WE+   LPT   AVEVG KTEVGV+AT +D RP  S+   GCG+ GG GC A N+RDGI S +ESRWSC T LV   G CQIE++FAEPQ++VDIQVAFWK +ER RTL V+ NGE THTHESYA STFNTLG TA E  TVMLE+  L S+EWISL+EV
Sbjct:    1 MTKHSSRLLGVLGAAAILSSVGA------------CWEDGFGDGYCQLQNNNAECGYDGGDCCECTCQNPWGDDDEWFCSKDGYGFACIDPDAPCVDDDDITIEIAQNC-VTSDLGNGYCDEDNNNEICGYDFGDCCECTCVSPWD--DDDWYCSSDGSGFACIDPAAPCVDDDDVTIDMVENCGYVRGLGDGWCDDWNNNELCGYDGGDCCECTCVAPPANDDWDXXXXXXXXXXXXXXXXGACGG--GFACIDPNAACVNDDDITVGM------------------------------------DTPSNKCG-----WRXXXXXXXXXXXXXXXXXXXXDMIE----NCEYPWG-VGDGYCNQQNNNELCAYDGGDCCSCTCQ--NDFDDDWACTT---FACIDPEAACVNDDDITVDMFVNCEYPV------------DIGNGWLRWRRLLRVHMRGYDGGDCCSCTCQNAWDWDDDYSCSSEYNSLDCKDPTASCFGEGT-TGSDDF--TFHDDYQPTSYEFVHWEETESLPTVIDAVEVGTKTEVGVSATAHDVRPRSSSDDVGCGQVGGLGCTATNTRDGIVSDIESRWSCATILVPDEGACQIEFSFAEPQNVVDIQVAFWKGNERTRTLWVHVNGELTHTHESYADSTFNTLGVTATEASTVMLESVALLSDEWISLLEV 605          
BLAST of mRNA_C-linearis_contig105.965.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 538 bits (1386), Expect = 1.920e-181
Identity = 318/664 (47.89%), Postives = 390/664 (58.73%), Query Frame = 1
Query:   55 MKT-SNRWLGLLGAAVIASAVSVSAYHDYSDSSTGCYDLWVADGYCDSRNNNELCGYDGGDCCSCTCERDSGDSYQCN-NDFACIDPAAPCVDDDDVTVDLVENCDYIQGISNGWCDMGNNNAGCGYDGGDCCSCTCVPPGDSRDDDYACSDNASDYACIDPEAACVNDDDVTV---DIVENCYPGSI---GNGYCDQRNNKAVCNYDGGDCCECTCVSEGGDDDRACSQNDGFACIDPAAECVDDDDITIDMVENCHDVSRRDGCLSLTVQGYSCVAVPGLRACRCVNTSVRESCGVLPSGWNEALCLHRC-FSILAPGIPFSSAPVAASPSSVSFGAG--NIGNGWCDEGNNKAECDYDGGDCCECTCVAGEEFDDDYRCTESTGYACIDPEAPCVDDDSVTVDMIDLCDWPMGIDLHVASRNRCDIGNNIPECNYDGGDCCYCTCDGGDNDDWLCSASGSGFDCKDDSAPCFGEEP--PTSDDDFASTYTDDYAMSYEFVPWEQDGPLPTYEGAVEVGDKTEVGVTATGYDERPGRSAVQNGCGEDGGDGCEAANSRDGIASVVESRWSCGTSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKADERIRTLGVYFNGEKTHTHESYAGSTFNTLGATANEVVTVMLEATGLTSNEWISLIEV 2007
            MKT ++ WLGLL    IA A+  +     S +S  C   +  DG CD+ NNN  C YDGGDCCSCTC+ D+   Y C  + F C+DP+A CVDDDD+  + V+NC     I +G CD  NN   C YDGGDCCSCTC  P D   DD +    ++ +ACIDP+A CVNDDD T    ++V+    G+I    +G CDQ NN   C YDGGDCC CTC+    DD   C    GFACIDP+AEC DDDD+T+D VENC   S  DG   L      C    G   C C      +      SG + +LC     F+ + P  P  +          + G    N G+GWCD+ NN  EC YD GDCC CTCV G      Y C    G+ C+DP A CVDDD  +  + D C      +    +   CD  NN  EC YDGGDCC CTC+    +D   S + SGFDC+D +APCF EEP  P  +DD       D +MSY+F+  ++D  L     AVEVG KT+V V+AT YD RPG S+   GCGE GG+GC  AN+RDGI++  ESRWSC + +V GGGPCQIEY F EPQDI DI+VAFW  DER+RTL VYF+G    THESYAGSTFN+LG +A  + TVMLE+  L  NEWISLIEV
Sbjct:    1 MKTPTHGWLGLL----IAVAIVSTRVEADSTTSNDCSPDFYRDGECDTHNNNAECEYDGGDCCSCTCQNDT---YDCGVSGFDCVDPSAECVDDDDIGTETVQNCGDPWAIGDGNCDKDNNTEECDYDGGDCCSCTCQVPDDGTGDDGSLCGESAVFACIDPDAPCVNDDDFTAFLPEVVKETCGGNIVHLADGDCDQINNNEECGYDGGDCCFCTCL----DDFYECGIR-GFACIDPSAECADDDDVTVDTVENCGVRSIGDGQCDLDNNREEC-HYDGGDCCSCTCQVPDDD-----SGDDGSLCSESTVFACIDPDAPCVNDDDITVDMMDTCGGHPINFGDGWCDDDNNNKECGYDSGDCCSCTCVDGT-----YECG-IVGFDCVDPSAECVDDDYPSTGVTDDCG-----NAGTVANGYCDFDNNKEECAYDGGDCCECTCEPSGLEDGSDSCT-SGFDCQDPTAPCFDEEPTLPEKEDD-------DGSMSYDFL--DEDDLLTVGTDAVEVGTKTDVSVSATAYDTRPGSSSGDVGCGEAGGNGCSPANTRDGISNETESRWSCASKIVPGGGPCQIEYVFGEPQDIEDIKVAFWMGDERVRTLEVYFDGTLHRTHESYAGSTFNSLGVSATGIGTVMLESVDLLENEWISLIEV 625          
BLAST of mRNA_C-linearis_contig105.965.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 507 bits (1305), Expect = 3.050e-171
Identity = 300/660 (45.45%), Postives = 356/660 (53.94%), Query Frame = 1
Query:   52 MMKTSNRWLGLLGAAVIASAVSVSAYHDYSDSSTGCYDLWVADGYCDSRNNNELCGYDGGDCCSCTCERDSGDSYQ--CNND---FACIDPAAPCVDDDDVTVDLVENCDYIQGISNGWCDMGNNNAGCGYDGGDCCSCTC-VPPGDSRDDDY--ACSDNASDYACIDPEAACVNDDDVTVDIVENCYPGSIGNGYCDQRNNKAVCNYDGGDCCECTCVSEGGDDDRACSQNDGFACIDPAAECVDDDDITIDMVENCHDVSRRDGCLSLTVQGYSCVAVPGLRACRCVNTSVRESCGVLPSGWNEALCLHRCFSILAPGIPFSSAPVAASPSSVSFGAGNIGNGWCDEGNNKAECDYDGGDCCECTCVAGEEFDDDYRCTESTGYACIDPEAPCVDDDSVTVDMIDLCDWPMGIDLHVASRNRCDIGNNIPECNYDGGDCCYCTCDGGDNDDWLCSASGSGFDCKDDSAPCFGEEPPTSDDDFASTYTDDYAMSYEFVPWEQDGPLPTYEGAVEVGDKTEVGVTATGYDERPGRSAVQNGCGEDGGDGCEAANSRDGIASVVESRWSCGTSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKADERIRTLGVYFNGEKTHTHESYAGSTFNTLGATANEVVTVMLEATGLTSNEWISLIEV 2007
            M K S+R LG+LGAAV+ S+V+ ++      SS+GC+D    DGYC   NNN  CGYDGGDCC CTC+   G  +   C+ +   FAC+DP APC  +D VTV+  + CD+   + +GWCD  NNN  CGYDGGDCC CTC VP  D  D+D   AC +    +ACIDP A CVNDDD+TVD+ E+C    +G+GYCD  NN A C YDGGDCCECTC     + +  C    GFACIDP A CVDDD +T+DM++NC                Y       LR                                                         +GNGWCDE NN   C YDGGDCCECTC +                                        W                                       NDD+ CS+    F+CKD +A CFGEE  T  DDF+   TDD  MSYEFVPWE+   LPT +GAVEVG KTEVGV++T +D RPG     +GCGE GG GC AAN+RDGI S +ESRWSC T LV+  GPCQIE+TFAEPQ IVDIQVAFWK +ER RTL VY NGE THTHESYA +TFNTLG TA +V TVMLE+  L S+EWISLIEV
Sbjct:    1 MTKHSSRLLGVLGAAVVLSSVAANSL-----SSSGCWDALYGDGYCTPPNNNAECGYDGGDCCECTCQNPQGGDHHWICSKNGSGFACVDPDAPCYAEDGVTVEASQECDFWD-LGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACGEG---FACIDPSAPCVNDDDITVDVDESCDAVGMGDGYCDMDNNNAACAYDGGDCCECTC-----EPNNKCGGRSGFACIDPGAPCVDDDSVTVDMIDNCD---------------Y-------LRV--------------------------------------------------------MGNGWCDEENNNELCAYDGGDCCECTCESA---------------------------------------W---------------------------------------NDDYTCSSEHGTFNCKDPNASCFGEET-TGSDDFS---TDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEV 482          
BLAST of mRNA_C-linearis_contig105.965.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 501 bits (1291), Expect = 5.940e-164
Identity = 299/688 (43.46%), Postives = 367/688 (53.34%), Query Frame = 1
Query:  163 DLW-VADGYCDSRNNNELCGYDGGDCCSCTCER--DSGDSYQCNNDFACIDPAAPCVDDDDVTVDLVENCDYIQGISNGWCDMGNNNAGCGYDGGDCCSCTCVPPGDSRDDDYACSDN-----ASDYACIDPEAACVNDDDVTVDIVENCYPGSIGNGYCDQRNNKAVCNYDGGDCCECTCVSEGGDDDRACSQNDGFACIDPAAECVDDDDITIDMVENCHDVSRRDG----------CLSLTVQGYSCVAVPGLRACRCVNTSVRESCGVL--------------------------------------------PSGWNEALCLHRCFSILAPGIPFSSAPVAASPSSVSFGAG------------------------------------------NIGNGWCDEGNNKAECDYDGGDCCECTCV--AGEEFDDD--YRCTESTGYACIDPEAPCVDDDSVTVDMIDLCDWPMGIDLHVASRNRCDIGNNIPECNYDGGDCCYCTCDGGDNDDWLCSASGSGFDCKDDSAPCFGEEPPTSDDDFASTYTDDYAMSYEFVPWEQDGPLPTYEGAVEVGDKTEVGVTATGYDERPGRSAVQNGCGEDGGDGCEAANSRDGIASVVESRWSCGTSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKADERIRTLGVYFNGEKTHTHESYA 1902
            D W + DG+CD  NNNE+CGYDGGDCC CTC    D  D + C N  ACIDP APCVDDDD+T  +VE C +++G+ +GWCD  NNN  CGYDGGDCC CTC  P    DDD+   D+      S +ACIDP A CVNDDD+TVD+ E+C   ++G+GYCD  NN   C    G C   +C       +  C +  GFACIDP A CVDDD  T+DM++NC D    DG          C    ++G+   ++    A R V T+V   CGV                                              +G  +  C     +      PF S     +  S+                                               ++G+GWCD+GNN   C YDGGDCCECTC   +  ++DDD  Y C E   ++CIDP A CV DD +TVDM + C +  GI         CD  NN  EC YDGGDCC CTC    +DD+LCS+    FDC+D +A CFGEE  T  DD++   TDD  MSYEFVPWE+   LPT +GAVEVG KTEVGV+AT +D R GRS+   GCGE GG GC A N+RDGI S +ESRWSC T LV+  GPCQIE+TFAEPQ I+DIQVAFWK +ER RTL V     +  T E  A
Sbjct:   74 DTWGLGDGWCDQDNNNEICGYDGGDCCECTCVSPWDDDDDWACRNYNACIDPDAPCVDDDDITAVMVEECGWVRGVGDGWCDEDNNNELCGYDGGDCCECTCEAP--PADDDWDWDDDWYGPCGSGFACIDPNAPCVNDDDITVDVDESCDAVNMGDGYCDISNNIEAC----GACSWLSCTDT---PNNKCGRWSGFACIDPEAPCVDDDSFTVDMIDNC-DWGIGDGWCDEDNNNELCGDRVIEGWE--SIVNATAERVVRTTVVR-CGVSVKWLDNELKEEIGERREVFKQFLSEAFEESWENVTVDMIENCSWSTGIGDGYCSENLNTPECATAPFVSLETVETRISLHLPLALRQNIYDDDWSCTRFACIDPEAACVDDDDITVDMIENCDYPLSVGDGWCDKGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYHCRE---FSCIDPNAACVSDDDITVDMFENCGYVSGI-----GNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPNASCFGEES-TGSDDYS---TDDEPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVRATPSRLKTIEIQA 736          
BLAST of mRNA_C-linearis_contig105.965.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 407 bits (1046), Expect = 2.900e-131
Identity = 252/567 (44.44%), Postives = 300/567 (52.91%), Query Frame = 1
Query:  475 SRDDDYACSDNASDYACIDPEAACVNDDDVTVDIVENC-YPGSIGNGYCDQRNNKAVCNYDGGDCCECTCVSEGG--DDDRACSQNDGFACIDPAAECVDDDDITIDMVENCHDVSRRDGCLSLTVQGYSCVAVPGLRACRCVNTSVRESCGVLPSGWNEALCLHRCFSILAPGIPFSSAPVAASPSSVSFGAGNIGNGWCDEGNNKAECDYDGGDCCECTCV--AGEEFDDD--YRCTESTGYACIDPEAPCVDDDSVTVDMIDLCDWPMGIDLHVASRNRCDIGNNIPECNYDGGDCCYCTCDGGDNDDWLCSASGSGFDCKDDSAPCFGEEPPTSDDDFASTYTDDYAMSYEFVPWEQDGPLPTYEGAVEVGDKTEVGVTATGYDERPGRSAVQNGCGEDGGDGCEAANSRDGIASVVESRWSCGTSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKADERIRTLGV-------------------------------------------------YFNGEKTHTHESYAGSTFNTLGATANEVVTVMLEATGLTSNEWISLIEV 2007
            + DDD+ C +    +AC+DP A CV+DD VTVD++ENC +   IG+GYC +  N   C              E G  DDD +C++   FACIDP A CVDDDDIT+DM ENC      D  LS                                                                        +G+GWCDEGNN   C YDGGDCCECTC   +  ++DDD  Y C E   ++CIDP A CV DD +TVDM + C +  GI         CD  NN  EC YDGGDCC CTC    +DD+LCS+    FDC+D +A CFGEE  T  DD++   TDD  MSYEFVPWE+   LPT +GAVEVG KTEVGV+AT +D R GRS+   GCGE GG GC A N+RDGI S +ESRWSC T LV+  GPCQIE+TFAEPQ I+DIQVAFWK +ER RTL V                                                 + NGE THTHESYA +TFN LG TA +V TVMLE+  L S+EWISLIEV
Sbjct:    3 NEDDDWHCRN----FACVDPNAPCVDDDSVTVDMIENCSWSTGIGDGYCSENLNTPEC--------------EVGVYDDDWSCTR---FACIDPEAACVDDDDITVDMFENC------DYALS------------------------------------------------------------------------VGDGWCDEGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYHCRE---FSCIDPNAACVSDDDITVDMFENCGYVSGI-----GNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPNASCFGEES-TGSDDYS---TDDEPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVRATPSRLKTIEITSRLFWLLCCPRQHLRDCGARSKSFIFLTAQTFPTQVHINGEMTHTHESYADATFNMLGVTATDVSTVMLESVALLSDEWISLIEV 458          
BLAST of mRNA_C-linearis_contig105.965.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 355 bits (911), Expect = 1.140e-114
Identity = 183/303 (60.40%), Postives = 215/303 (70.96%), Query Frame = 1
Query: 1099 YDGGDCCECTCVAGEEFDDDYRCTESTGYACIDPEAPCVDDDSVTVDMIDLCDWPMGIDLHVASRNRCDIGNNIPECNYDGGDCCYCTCDGGDNDDWLCSASGSGFDCKDDSAPCFGEEPPTSDDDFASTYTDDYAMSYEFVPWEQDGPLPTYEGAVEVGDKTEVGVTATGYDERPGRSAVQNGCGEDGGDGCEAANSRDGIASVVESRWSCGTSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKADERIRTLGVYFNGEKTHTHESYAGSTFNTLGATANEVVTVMLEATGLTSNEWISLIEV 2007
            YDGGDCCECTC   E  DDDY+C +   ++CIDP APCV+DD +TVDM D C +  GI         CD  NN   C YDGGDCC CTC+   +DD+ C      FDCKD SA CFGEE    + D ++  + D    YEFVPWEQ  PLPT + AVEVG KTEV V+AT +D R GRS+ + GCGE GG+GC A N+RDGI++ +ESRWSC   L++  GPCQIE++FAEPQ+IVDIQVAFWK +ER+RTL VY NGE THTHESYA STFNTLG TANE  TVMLE+  L SNEWISLIEV
Sbjct:   10 YDGGDCCECTC---EGDDDDYKCMQ---FSCIDPNAPCVNDDDITVDMFDNCGYVSGI-----GDGWCDSNNNKEACGYDGGDCCSCTCESVWDDDYTCGEDAF-FDCKDPSAACFGEETAMGNGDDSTGRSSDPDTEYEFVPWEQTEPLPTVDDAVEVGTKTEVSVSATAHDVRAGRSSGEVGCGEAGGNGCAANNARDGISTEIESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTLEVYVNGELTHTHESYADSTFNTLGVTANEANTVMLESVSLLSNEWISLIEV 300          
BLAST of mRNA_C-linearis_contig105.965.1 vs. uniprot
Match: D7FI88_ECTSI (Similar to Pappalysin-2 (Pregnancy-associated plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma protein-E1) (PAPP-E) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI88_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 7.810e-99
Identity = 168/276 (60.87%), Postives = 193/276 (69.93%), Query Frame = 1
Query: 1183 YACIDPEAPCVDDDSVTVDMIDLCDWPMGIDLHVASRNRCDIGNNIPECNYDGGDCCYCTCDGGDNDDWLCSASGSGFDCKDDSAPCFGEEPPTSDDDFASTYTDDYA-MSYEFVPWEQDGPLPTYEGAVEVGDKTEVGVTATGYDERPGRSAVQNGCGEDGGDGCEAANSRDGIASVVESRWSCGTSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKADERIRTLGVYFNGEKTHTHESYAGSTFNTLGATANEVVTVMLEATGLTSNEWISLIEV 2007
            +ACIDP APCVDDD VTVDM++ C +  GI         CD  NN  EC YDGGDCC CTC    +DD+ CS+    FDC+D +A CFGE   T  DDF+  + DDY  MSYEF+ WE+   LPT   AVEVG KTEVGV+AT +D RPG S    GCGE GG GC A N+RDGI S +ESRWSC TSLV   GPCQIE+TFAEPQ+IVDIQVAFW  +ER+ TL V+ NGE THTHESY   TFNTLG TA E  TVMLE+  L S+EWISL+EV
Sbjct:    3 FACIDPSAPCVDDDDVTVDMVENCGYVSGI-----GNGWCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPTASCFGEGT-TGSDDFS--FHDDYQPMSYEFLSWEETESLPTVVDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLEVHVNGELTHTHESY-DDTFNTLGVTATEASTVMLESVALLSDEWISLLEV 269          
BLAST of mRNA_C-linearis_contig105.965.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 2.020e-89
Identity = 150/225 (66.67%), Postives = 171/225 (76.00%), Query Frame = 1
Query: 1333 YDGGDCCYCTCDGGDNDDWLCSASGSGFDCKDDSAPCFGEEPPTSDDDFASTYTDDYAMSYEFVPWEQDGPLPTYEGAVEVGDKTEVGVTATGYDERPGRSAVQNGCGEDGGDGCEAANSRDGIASVVESRWSCGTSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKADERIRTLGVYFNGEKTHTHESYAGSTFNTLGATANEVVTVMLEATGLTSNEWISLIEV 2007
            YDGGDCC CTC+   NDD+ CS+    F+CKD +A CFGEE  T  DDF+   TDD  MSYEFVPWE+   LPT +GAVEVG KTEVGV++T +D RPG     +GCGE GG GC AAN+RDGI S +ESRWSC T LV+  GPCQIE+TFAEPQ IVDIQVAFWK +ER RTL VY NGE THTHESYA +TFNTLG TA +V TVMLE+  L S+EWISLIEV
Sbjct:   15 YDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEET-TGSDDFS---TDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEV 231          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3F4_ECTSI1.410e-20252.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM92_9PHAE3.860e-20148.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI87_ECTSI1.530e-18747.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTT4_9PHAE1.920e-18147.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4F9_ECTSI3.050e-17145.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXR2_9PHAE5.940e-16443.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB04_9PHAE2.900e-13144.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0S3_ECTSI1.140e-11460.40LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FI88_ECTSI7.810e-9960.87Similar to Pappalysin-2 (Pregnancy-associated plas... [more]
D7G5F4_ECTSI2.020e-8966.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:538135..544316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.2
Seed ortholog evalue8.6e-37
Seed eggNOG ortholog2880.D7FX77
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E9KF@1,2SFXU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons10
Model size2009
Cds size2007
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.965.1prot_C-linearis_contig105.965.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig105 538135..544316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927397.2960896-CDS-C-linearis_contig105:538134..5383511622927397.2960896-CDS-C-linearis_contig105:538134..538351Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 538135..538351 +
1690879676.4685292-CDS-C-linearis_contig105:538134..5383511690879676.4685292-CDS-C-linearis_contig105:538134..538351Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 538135..538351 +
1622927397.3107696-CDS-C-linearis_contig105:538768..5389201622927397.3107696-CDS-C-linearis_contig105:538768..538920Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 538769..538920 +
1690879676.4782784-CDS-C-linearis_contig105:538768..5389201690879676.4782784-CDS-C-linearis_contig105:538768..538920Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 538769..538920 +
1622927397.355126-CDS-C-linearis_contig105:539167..5392221622927397.355126-CDS-C-linearis_contig105:539167..539222Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 539168..539222 +
1690879676.4904547-CDS-C-linearis_contig105:539167..5392221690879676.4904547-CDS-C-linearis_contig105:539167..539222Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 539168..539222 +
1622927397.3652704-CDS-C-linearis_contig105:539565..5397871622927397.3652704-CDS-C-linearis_contig105:539565..539787Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 539566..539787 +
1690879676.5016694-CDS-C-linearis_contig105:539565..5397871690879676.5016694-CDS-C-linearis_contig105:539565..539787Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 539566..539787 +
1622927397.375174-CDS-C-linearis_contig105:540220..5404341622927397.375174-CDS-C-linearis_contig105:540220..540434Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 540221..540434 +
1690879676.5104733-CDS-C-linearis_contig105:540220..5404341690879676.5104733-CDS-C-linearis_contig105:540220..540434Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 540221..540434 +
1622927397.4124525-CDS-C-linearis_contig105:540463..5406441622927397.4124525-CDS-C-linearis_contig105:540463..540644Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 540464..540644 +
1690879676.5210907-CDS-C-linearis_contig105:540463..5406441690879676.5210907-CDS-C-linearis_contig105:540463..540644Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 540464..540644 +
1622927397.4274101-CDS-C-linearis_contig105:540662..5407171622927397.4274101-CDS-C-linearis_contig105:540662..540717Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 540663..540717 +
1690879676.5320246-CDS-C-linearis_contig105:540662..5407171690879676.5320246-CDS-C-linearis_contig105:540662..540717Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 540663..540717 +
1622927397.4393482-CDS-C-linearis_contig105:541068..5412451622927397.4393482-CDS-C-linearis_contig105:541068..541245Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 541069..541245 +
1690879676.541203-CDS-C-linearis_contig105:541068..5412451690879676.541203-CDS-C-linearis_contig105:541068..541245Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 541069..541245 +
1622927397.4497068-CDS-C-linearis_contig105:542097..5426811622927397.4497068-CDS-C-linearis_contig105:542097..542681Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 542098..542681 +
1690879676.557726-CDS-C-linearis_contig105:542097..5426811690879676.557726-CDS-C-linearis_contig105:542097..542681Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 542098..542681 +
1622927397.493631-CDS-C-linearis_contig105:544166..5443161622927397.493631-CDS-C-linearis_contig105:544166..544316Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 544167..544316 +
1690879676.5705462-CDS-C-linearis_contig105:544166..5443161690879676.5705462-CDS-C-linearis_contig105:544166..544316Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 544167..544316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig105.965.1

>prot_C-linearis_contig105.965.1 ID=prot_C-linearis_contig105.965.1|Name=mRNA_C-linearis_contig105.965.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=669bp
GRRTFFGRLLGSYRSMVMMKTSNRWLGLLGAAVIASAVSVSAYHDYSDSS
TGCYDLWVADGYCDSRNNNELCGYDGGDCCSCTCERDSGDSYQCNNDFAC
IDPAAPCVDDDDVTVDLVENCDYIQGISNGWCDMGNNNAGCGYDGGDCCS
CTCVPPGDSRDDDYACSDNASDYACIDPEAACVNDDDVTVDIVENCYPGS
IGNGYCDQRNNKAVCNYDGGDCCECTCVSEGGDDDRACSQNDGFACIDPA
AECVDDDDITIDMVENCHDVSRRDGCLSLTVQGYSCVAVPGLRACRCVNT
SVRESCGVLPSGWNEALCLHRCFSILAPGIPFSSAPVAASPSSVSFGAGN
IGNGWCDEGNNKAECDYDGGDCCECTCVAGEEFDDDYRCTESTGYACIDP
EAPCVDDDSVTVDMIDLCDWPMGIDLHVASRNRCDIGNNIPECNYDGGDC
CYCTCDGGDNDDWLCSASGSGFDCKDDSAPCFGEEPPTSDDDFASTYTDD
YAMSYEFVPWEQDGPLPTYEGAVEVGDKTEVGVTATGYDERPGRSAVQNG
CGEDGGDGCEAANSRDGIASVVESRWSCGTSLVEGGGPCQIEYTFAEPQD
IVDIQVAFWKADERIRTLGVYFNGEKTHTHESYAGSTFNTLGATANEVVT
VMLEATGLTSNEWISLIEV
back to top

mRNA from alignment at C-linearis_contig105:538135..544316+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig105.965.1 ID=mRNA_C-linearis_contig105.965.1|Name=mRNA_C-linearis_contig105.965.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6182bp|location=Sequence derived from alignment at C-linearis_contig105:538135..544316+ (Chordaria linearis ClinC8C monoicous)
GGCAGGCGTACTTTTTTCGGGCGCTTGCTCGGATCATACCGATCGATGGT CATGATGAAGACCTCTAACCGGTGGCTGGGCCTCCTCGGTGCCGCAGTCA TCGCCTCAGCCGTTAGTGTGTCTGCCTATCACGACTACAGCGACAGCAGC ACGGGCTGCTATGACCTTTGGGTCGCGGATGGATACTGCGACAGCAGGAA CAACAACGAGCTCTGCGGTACGTATTTCGGACCTTTGGAAGGGCAAATCT TGTCTACCGGTACTGTATTATCTACAAGCAGTTAATTTTTTATTTTTCGT TACAATACTCAACAGCAGCAAGAGCCCAAGTTCGAAAGCAGCACTCAACT ATCGTTAGTTGTTGGTGATTTTTTGTTCATGTTTTTTTCGTCAGCCGCAG CGACTACGGTGCGAACGACACATACATACCTTGTTTGCGAGTTGAACAAG AAAAAATTGCGAATGTGATTCCATTACCTCGACGTATTATGTAGAAAGTA AGCCGTATTTTCCGTGGAACTTGATGGAACCGAAACCACGGCCGGCCGCA AAACTTAGTTGCACTTATCGGGCTCTCCTGGTTTGTTTCGCGATTAACAC TCCCCGCGTTTGTTCTTGATGCCTTATTTTTCAGGCTACGATGGTGGAGA CTGCTGCTCTTGTACGTGTGAGAGAGACTCTGGCGACAGCTACCAGTGTA ACAACGATTTTGCCTGCATCGACCCCGCTGCACCGTGTGTGGACGACGAC GACGTCACCGTCGATTTAGTGGAGAACTGCGACTACGTAAGTGGGTCAGG TCAACGCGACAGGCACGTCCTTGTGCTTTACCGTGGAATTCCTCGTAAGC GTCAGCACGCCCTAGTTCCACGCGGGCTTGGCGGCGACGTCGGCGCCTGT AAATTATTGGTGGGATTCACTCATGAAGCACTCATGGGTTTCTCATGAGT AAATCCCGATATATATATAGAAGCACTTCTATCAAATCGAACATCCTGAC TCCGTATTTCCTTCTCGCTTCTCGCCCATGTAGATCCAGGGGATCAGCAA TGGTTGGTGCGATATGGGCAACAACAACGCTGGATGTGGTGAGTGCGTAC GTGTCCTGAACGTGGTGTTATTAGCCGTTTGTTTGGTGTTTGGCAAAGCT AAGAAGGGACAAAGGGCCATTCCGTCGTACCGGCAATTTACTTTTAAGAG GCTGAATTTGCGACAGTTACGAACAAGAATGAATCTGCTGGCAGCGTCCA TGCTACATGCAGGCGACTAATTCTAGAAACTACAACGACGGTGACACCAT GTGGACCCTTTGCCCGCAAACTAAGCACTCGATACAAAGATAGACTAAAC CCACAAATTATATTCTTTCCCCCGTTGTCCCTTGCTCGTCCCCGCATTTG TTGTTCTTCCGTTTCCTCTCCTTTTGTCAAGGCTACGACGGAGGAGATTG CTGCTCTTGTACATGTGTGCCCCCGGGGGACTCAAGGGATGATGACTACG CATGCAGCGACAACGCCTCCGACTACGCCTGCATCGATCCGGAGGCCGCC TGTGTGAACGACGATGACGTTACCGTCGACATTGTTGAGAACTGTTACCC GGGATCCATAGGCAACGGCTATTGTGATCAGCGCAACAACAAGGCCGTGT GCAGTGAGTGCGCGTCTGGAACGCCGTGTGTTGCCGTTGCTCTCAGAAGC GAACATCTACACGAACGTAGCTTTCACCATATTTCTTCGAACGAACAGCG CAGCAGGGAAGCCAAAAAGTACGAGTGATGGTTATGCCTTTCTCAGGCAT GTTTTTCAGATTCAGCTTTCCCCAGTTATTTTTGCCCTCTACATGCAGCA TACCGTCTCTCTCAGCTAAGCATCTCGTCAGACTGCAGACACCCCTTTGC ATTTATTTGACGGCTGGCTAGAGAATGTTGATCGGTTCCAAGGGTTCCGG CTGCCTCCTCCCGTCGTAGGCTGCAATGTAGATACCATTGCAACCGGAGT TCAGTTCGGAACGCTGAACTGATTTCTTCCCCGCACTGTCTGTCTGTTGC TCGTCCTTGTTCGTTGCAATGTCAACCTTTTTCAAGACTACGACGGCGGA GACTGCTGCGAATGCACTTGCGTTTCTGAGGGAGGCGATGATGACAGGGC ATGCTCTCAAAACGACGGCTTCGCCTGCATCGACCCTGCCGCTGAATGTG TGGACGACGACGACATTACCATCGACATGGTGGAAAACTGCCACGATGTG AGCCGACGCGATGGGTGCCTTTCCCTGACTGTTCAGGGCTATTCGTGCGT GTTTTGCGCTCGAAAGTAAAGCGCAGTAGTGCAGTGCCCGGACTCCGTGC ATGCCGGTGTGTCAACACAAGCGTACGTGAGAGCTGCGGTGTCCTCCCGA GCGGCTGGAATGAAGCATTGTGTCTCCATCGTTGTTTCTCAATTCTTGCT CCTGGCATACCGTTCTCTTCTGCACCCGTCGCTGCTTCTCCCTCGTCTGT CTCTTTCGGGGTTTTCGTTCGACACTAGGCCGGAAACATCGGAAACGGCT GGTGCGACGAGGGGAACAACAAGGCGGAGTGCGGTGAGTGAAGCGCTTAT TTCTGTGTGTCCCTCGGCATGATGACCTTGAACCCACCCACATGCATGAT GTAATGCGGCGCGTTCCGAACCGTACACCGTTCGAAGGTCGAAACAGCAT GTAGTACCTGTTCACCTTTTATGCAAACAAGTACGGGACAGGTAAATGTC TGTTGATGTGGTGCGTCGCAGCGTTCTAGGGCCTGTCCTCCGAACTGCCG ATGTTTGGCGAAAATAGATCCCGGAAAAATCCGAGAGAATCAAGCCTATT TTTGTACTTCGTATGTACTGACGGATCGAAACTCTCCTTGAAATGGGCGG CTGACTGTGTTTTCGCGCCCATTCTGTCCTCCAGATTACGACGGAGGAGA CTGCTGCGAATGCACGTGCGTCGCAGGAGAGGAATTCGACGACGACTACC GCTGCACCGAATCGACCGGATATGCCTGCATCGACCCGGAAGCGCCGTGC GTGGACGATGACAGCGTCACTGTCGACATGATCGACCTTTGCGACTGGCC TATGGGCATCGGTAAGACGAGCATTTCTCCTCTCCAAGATTCTGAACTCG ACCATACTGTCGTCACACTCGAGAAAGGCGGTCGTGGCGTGAAGTGCATA CGATGTAGAAGTATAGCACCGCTGCACGGTGTAGAGTACCCATTTCGCAT ATGGCTTGATCCCGAACTGATCGCTCACATCGTCAAGTCACGACCTGTTT AGCTTACTGTGGAAAAAAAACTCAAGTCTCTGGGACAGCTAGGGAATCTA GAGCAGTCCGCTCGCTGCAGCGACTTCTTCACAGGACGGCAATACGTAGG CTTTTCCGCTGGCATCTACTGCAGTACTAGTACACCTGAAGGCGCTAATA TTCCGTTCTTTGTCGGTTCCGTGCTCTCGTGCGGTCTTTTTTGTTTTCAC GTTCCGTCTTTCGGGATGGCTTTGTCTTATCGCGCTCTGATTTTCGGAAC CTCTCCCGTCTTCTCGCGGTCTCCCAGGCAACGGATGGTGGGTCACGGTG TGAGAGTGGTTGGGTGATGGCACCTTCCTATAATCTGGGGCCGTTGCGCG CTGAATGTTTCTCACCAGCGTTATTAGGATACCTCTCTTCTTGGTGCACT GCCGTGCCATCATAGAATTCATCTTGCCAGCTTTGCCTCGGGGGCATGCG TTATCGTTTTCGCAGACTTTCTCGGTTTGAGACAAGACCAGACCTTTCAT GCTCTGCCTTGTAGCTCGTGTCTGGTATCCTCATCCTTGCTCATGTACGT AAACTTTCGCACCATCTCGTTGTTAGCCGACACACCCGTCCGTTCTGTAC CCCTCGCTGCATTGGCCACACTTTTTTGTCAGTCCTACAGCCCTTTGCCA CATCCTCACTTAGACCTGCACGTGGCTTCCCGCAACAGGTGCGACATCGG AAACAACATCCCGGAGTGCAACTACGACGGGGGTGATTGCTGCTACTGCA CCTGTGATGGCGGCGACAACGACGACTGGCTGTGCAGCGCTAGCGGCTCC GGCTTCGACTGCAAGGACGACAGCGCCCCGTGCTTCGGCGAGGAGCCCCC GACCAGCGACGATGACTTTGCGAGCACCTACACCGACGACTACGCGATGT CGTACGAGTTCGTCCCCTGGGAGCAGGACGGACCCCTCCCTACTTACGAA GGCGCCGTCGAGGTTGGCGACAAGACTGAGGTCGGGGTGACGGCCACCGG TTACGACGAACGCCCCGGCAGGAGCGCCGTCCAAAACGGCTGCGGCGAGG ACGGGGGTGACGGCTGCGAAGCGGCTAACTCCCGCGACGGCATTGCCAGC GTGGTCGAGTCCAGGTGGTCGTGCGGTACGAGCCTCGTGGAAGGCGGAGG TCCGTGCCAGATCGAGTACACATTCGCCGAGCCCCAGGACATCGTGGACA TCCAGGTTGCCTTCTGGAAGGCGGACGAGCGGATCCGTACGCTGGGCGTG AGTCAGAGAGTGAAGACGGAAAACTCCATGTCGATCGCTCAAAGAAGTTT GTCAGCTTCTGCTTTTTCCGTCTTGTTGAGAGCAGCACGGTAGGCTGGGA TCGTCCTTATGAAGAAGTAGGGCATGTTAAAATCGAACGCCAGCATAGCA AAAGAGAGAGTAGGAACCCGCCTTGTGATGTGTTTGGTTGTCGAAACCTC CCCCGCTGTTAAAACCCGAACATGCCCTCCAAACCCTTATGGCTGTGGTT TGAGTCACCTGTCCGTTAAACTCGTCCACAGGTCTACATCAACGGTGAAA TGACACTGACGCACGAATCCTACGCTGGGCCGACCTTCAATGAGCTTGGT GTGGTTGCCAACGGGGTCACCACGGTCATGCTAGAGTCCAGCGGATCCAC GGCAAGCGAGTGGATCAGCCTCATCGAGGTCAGTCGCCACAAAGAGTTGG CTGTTTGACTCTGGCATACGCTTTTATCTACTGTAGCGGTCTCGGCAACT CTGCGACGAAAGTTCTGATGTTCTTCAATCTTCTGCCACCTGGTCGGAGT GACCAATCCCATACGCTTGGTAATCCTCCATGTGCTTGGAAGGAGAATTG GTCAGTCTCTCTCGGATCGATGTCATCACCACATTCTGGCATTCTTACAC ACCAACGTTCATGCATTCCGTAGGAAATGGACAACGCTGTCCATTTGTTT TGATCGAGGGAACAGCTGCGAGAGCATGGAGTTGATTTCTGCCACTCGCT CAACGCCTTATTTCGGTCAGCTTCCTCTCCTGACATCATGCTTCCCACAT GTACCTCCTGCCTGTGCTGCGTTTTTCAACCAACGCAGGTGCTTATCTTC GTCAAGCCCGACGAGGAACCCCTCCCTACCGTCGACGGTGCCGTCGAGGT CGGCACCAAGACCGAGGTTGGGGTGTCGGCCACCGCTCACGACGTGCGCC CCGGCAGGAGCAGCGGCATGAGCGGCTGCGGCGTGGAAGGAGACGACGGC TGCGAAGGGCCCCTCACCCGTGACGGCATCACCAACGAGATCGAGTCCAG GTGGTCTTGCGCCCCGAAGCTCGTGGAGGGCGGAGGTCCCTGCCGGATCG AGTACACGTTCGCCGCGCCGCAGCAAGTCATGGACATCCAGGTCGCCTTC CGGAAGGCGGACGAGCGGACCCGTACGCTGGACGTGAGTGAGAGATTGAA GACGTGTAGCTCCCGGCCGGTGCTCGACCATGTAGAATAATCGTCTTTCC ATGTTCCCGCCGAGGTATGAGCGGCACGTTTGGCTCGAATGGCCCGCATG AAGAAGTTGGGAATGCACCCTCCCAACGGGTGGAAGCGAAAGGCAAGAGG AGTCTTCCACCCGCGTTTCGACGTTATTCGTTGACGAAGCTTCCTCTCTT TAGCAACTCGAACACGGGGTAGGACCAAACCATCATGCTGTGCTGATGTT GAGTCATTTGCCCCCCAAACCCATCCGCGCAGGTCTACTTTAACGGTGAA AAGACTCACACGCACGAATCCTACGCTGGGTCGACCTTCAACACGCTTGG TGCGACTGCCAACGAGGTCGTCACGGTCATGCTGGAGGCCACCGGGCTCA CGTCAAATGAGTGGATCAGCCTCATCGAGGTC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig105:538135..544316+

>mRNA_C-linearis_contig105.965.1 ID=mRNA_C-linearis_contig105.965.1|Name=mRNA_C-linearis_contig105.965.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4014bp|location=Sequence derived from alignment at C-linearis_contig105:538135..544316+ (Chordaria linearis ClinC8C monoicous)
GGCAGGCGTACTTTTTTCGGGCGCTTGCTCGGATCATACCGATCGATGGT
CATGATGAAGACCTCTAACCGGTGGCTGGGCCTCCTCGGTGCCGCAGTCA
TCGCCTCAGCCGTTAGTGTGTCTGCCTATCACGACTACAGCGACAGCAGC
ACGGGCTGCTATGACCTTTGGGTCGCGGATGGATACTGCGACAGCAGGAA
CAACAACGAGCTCTGCGGGCAGGCGTACTTTTTTCGGGCGCTTGCTCGGA
TCATACCGATCGATGGTCATGATGAAGACCTCTAACCGGTGGCTGGGCCT
CCTCGGTGCCGCAGTCATCGCCTCAGCCGTTAGTGTGTCTGCCTATCACG
ACTACAGCGACAGCAGCACGGGCTGCTATGACCTTTGGGTCGCGGATGGA
TACTGCGACAGCAGGAACAACAACGAGCTCTGCGGCTACGATGGTGGAGA
CTGCTGCTCTTGTACGTGTGAGAGAGACTCTGGCGACAGCTACCAGTGTA
ACAACGATTTTGCCTGCATCGACCCCGCTGCACCGTGTGTGGACGACGAC
GACGTCACCGTCGATTTAGTGGAGAACTGCGACTACGCTACGATGGTGGA
GACTGCTGCTCTTGTACGTGTGAGAGAGACTCTGGCGACAGCTACCAGTG
TAACAACGATTTTGCCTGCATCGACCCCGCTGCACCGTGTGTGGACGACG
ACGACGTCACCGTCGATTTAGTGGAGAACTGCGACTACATCCAGGGGATC
AGCAATGGTTGGTGCGATATGGGCAACAACAACGCTGGATGTGATCCAGG
GGATCAGCAATGGTTGGTGCGATATGGGCAACAACAACGCTGGATGTGGC
TACGACGGAGGAGATTGCTGCTCTTGTACATGTGTGCCCCCGGGGGACTC
AAGGGATGATGACTACGCATGCAGCGACAACGCCTCCGACTACGCCTGCA
TCGATCCGGAGGCCGCCTGTGTGAACGACGATGACGTTACCGTCGACATT
GTTGAGAACTGTTACCCGGGATCCATAGGCAACGGCTATTGTGATCAGCG
CAACAACAAGGCCGTGTGCAGCTACGACGGAGGAGATTGCTGCTCTTGTA
CATGTGTGCCCCCGGGGGACTCAAGGGATGATGACTACGCATGCAGCGAC
AACGCCTCCGACTACGCCTGCATCGATCCGGAGGCCGCCTGTGTGAACGA
CGATGACGTTACCGTCGACATTGTTGAGAACTGTTACCCGGGATCCATAG
GCAACGGCTATTGTGATCAGCGCAACAACAAGGCCGTGTGCAACTACGAC
GGCGGAGACTGCTGCGAATGCACTTGCGTTTCTGAGGGAGGCGATGATGA
CAGGGCATGCTCTCAAAACGACGGCTTCGCCTGCATCGACCCTGCCGCTG
AATGTGTGGACGACGACGACATTACCATCGACATGGTGGAAAACTGCCAC
GATGTGAGCCGACGCGATGGGTGCCTTTCCCTGACTGTTCAGGGCTATTC
GTGCGTACTACGACGGCGGAGACTGCTGCGAATGCACTTGCGTTTCTGAG
GGAGGCGATGATGACAGGGCATGCTCTCAAAACGACGGCTTCGCCTGCAT
CGACCCTGCCGCTGAATGTGTGGACGACGACGACATTACCATCGACATGG
TGGAAAACTGCCACGATGTGAGCCGACGCGATGGGTGCCTTTCCCTGACT
GTTCAGGGCTATTCGTGCGTTGCAGTGCCCGGACTCCGTGCATGCCGGTG
TGTCAACACAAGCGTACGTGAGAGCTGCGGTGTCCTCCCGAGCGGCTGGA
ATGAAGCATTGTGTCTCCATCGTTGTTTCTCAATTCTTGCTCCTGGCATA
CCGTTCTCTTCTGCACCCGTCGCTGCTTCTCCCTCGTCTGTCTCTTTCGG
GTGCAGTGCCCGGACTCCGTGCATGCCGGTGTGTCAACACAAGCGTACGT
GAGAGCTGCGGTGTCCTCCCGAGCGGCTGGAATGAAGCATTGTGTCTCCA
TCGTTGTTTCTCAATTCTTGCTCCTGGCATACCGTTCTCTTCTGCACCCG
TCGCTGCTTCTCCCTCGTCTGTCTCTTTCGGGGCCGGAAACATCGGAAAC
GGCTGGTGCGACGAGGGGAACAACAAGGCGGAGTGCGGCCGGAAACATCG
GAAACGGCTGGTGCGACGAGGGGAACAACAAGGCGGAGTGCGATTACGAC
GGAGGAGACTGCTGCGAATGCACGTGCGTCGCAGGAGAGGAATTCGACGA
CGACTACCGCTGCACCGAATCGACCGGATATGCCTGCATCGACCCGGAAG
CGCCGTGCGTGGACGATGACAGCGTCACTGTCGACATGATCGACCTTTGC
GACTGGCCTATGGGCATCGATTACGACGGAGGAGACTGCTGCGAATGCAC
GTGCGTCGCAGGAGAGGAATTCGACGACGACTACCGCTGCACCGAATCGA
CCGGATATGCCTGCATCGACCCGGAAGCGCCGTGCGTGGACGATGACAGC
GTCACTGTCGACATGATCGACCTTTGCGACTGGCCTATGGGCATCGACCT
GCACGTGGCTTCCCGCAACAGGTGCGACATCGGAAACAACATCCCGGAGT
GCAACTACGACGGGGGTGATTGCTGCTACTGCACCTGTGATGGCGGCGAC
AACGACGACTGGCTGTGCAGCGCTAGCGGCTCCGGCTTCGACTGCAAGGA
CGACAGCGCCCCGTGCTTCGGCGAGGAGCCCCCGACCAGCGACGATGACT
TTGCGAGCACCTACACCGACGACTACGCGATGTCGTACGAGTTCGTCCCC
TGGGAGCAGGACGGACCCCTCCCTACTTACGAAGGCGCCGTCGAGGTTGG
CGACAAGACTGAGGTCGGGGTGACGGCCACCGGTTACGACGAACGCCCCG
GCAGGAGCGCCGTCCAAAACGGCTGCGGCGAGGACGGGGGTGACGGCTGC
GAAGCGGCTAACTCCCGCGACGGCATTGCCAGCGTGGTCGAGTCCAGGTG
GTCGTGCGGTACGAGCCTCGTGGAAGGCGGAGGTCCGTGCCAGATCGAGT
ACACATTCGCCGAGCCCCAGGACATCGTGGACATCCAGGTTGCCTTCTGG
AAGGCGGACGAGCGGATCCGTACGCTGGGCACCTGCACGTGGCTTCCCGC
AACAGGTGCGACATCGGAAACAACATCCCGGAGTGCAACTACGACGGGGG
TGATTGCTGCTACTGCACCTGTGATGGCGGCGACAACGACGACTGGCTGT
GCAGCGCTAGCGGCTCCGGCTTCGACTGCAAGGACGACAGCGCCCCGTGC
TTCGGCGAGGAGCCCCCGACCAGCGACGATGACTTTGCGAGCACCTACAC
CGACGACTACGCGATGTCGTACGAGTTCGTCCCCTGGGAGCAGGACGGAC
CCCTCCCTACTTACGAAGGCGCCGTCGAGGTTGGCGACAAGACTGAGGTC
GGGGTGACGGCCACCGGTTACGACGAACGCCCCGGCAGGAGCGCCGTCCA
AAACGGCTGCGGCGAGGACGGGGGTGACGGCTGCGAAGCGGCTAACTCCC
GCGACGGCATTGCCAGCGTGGTCGAGTCCAGGTGGTCGTGCGGTACGAGC
CTCGTGGAAGGCGGAGGTCCGTGCCAGATCGAGTACACATTCGCCGAGCC
CCAGGACATCGTGGACATCCAGGTTGCCTTCTGGAAGGCGGACGAGCGGA
TCCGTACGCTGGGCGTCTACTTTAACGGTGAAAAGACTCACACGCACGAA
TCCTACGCTGGGTCGACCTTCAACACGCTTGGTGCGACTGCCAACGAGGT
CGTCACGGTCATGCTGGAGGCCACCGGGCTCACGTCAAATGAGTGGATCA
GCCTCATCGAGGTCGTCTACTTTAACGGTGAAAAGACTCACACGCACGAA
TCCTACGCTGGGTCGACCTTCAACACGCTTGGTGCGACTGCCAACGAGGT
CGTCACGGTCATGCTGGAGGCCACCGGGCTCACGTCAAATGAGTGGATCA
GCCTCATCGAGGTC
back to top