mRNA_C-linearis_contig105.964.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig105.964.1
Unique NamemRNA_C-linearis_contig105.964.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 2.230e-41
Identity = 89/168 (52.98%), Postives = 106/168 (63.10%), Query Frame = 2
Query:  338 CDYEFESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNXXXXXXXXTETXXXXXXXXXXXXXXXXXDEFSMSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAE 841
            C+  ++ DY+C +E    FDCKDP+  CFGEE T +DD                               D+  MSYEFVPWE  E LPTV+GAVEVGTKT+VGV++TA+DV PG SSG    GE GG GC   N+RDGI SEIESRWSCA+K+VD  GPCQIE+TFAE
Sbjct:  299 CESPYDDDYSCSSE-YGSFDCKDPNASCFGEEPTGSDD----------------------------FSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGMSSGDAGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAE 437          
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 5.190e-41
Identity = 88/168 (52.38%), Postives = 107/168 (63.69%), Query Frame = 2
Query:  338 CDYEFESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNXXXXXXXXTETXXXXXXXXXXXXXXXXXDEFSMSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAE 841
            C+  ++ DY C  ED A FDCKDPS  CFGEE  + + DD+        TE                        YEFVPWE  E LPTV+ AVEVGTKT+V V+ATA+DV  GRSSG V  GE GG+GCA  N+RDGI++EIESRWSCA+K++D  GPCQIE++FAE
Sbjct:   87 CESVWDDDYTC-GED-AFFDCKDPSAACFGEETAMGNGDDSTGRSSDPDTE------------------------YEFVPWEQTEPLPTVDDAVEVGTKTEVSVSATAHDVRAGRSSGEVGCGEAGGNGCAANNARDGISTEIESRWSCAAKLLDDEGPCQIEFSFAE 228          
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 8.560e-41
Identity = 90/168 (53.57%), Postives = 105/168 (62.50%), Query Frame = 2
Query:  338 CDYEFESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNXXXXXXXXTETXXXXXXXXXXXXXXXXXDEFSMSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAE 841
            C   ++ DY C +E    FDC+DP+  CFGEE T +DD                               D+  MSYEFVPWE  E LPTV+GAVEVGTKT+VGV+ATA+DV  GRSSG V  GE GG GC   N+RDGI SEIESRWSCA+K+VD  GPCQIE+TFAE
Sbjct:  199 CQSPYDDDYLCSSE-YGSFDCQDPNASCFGEESTGSDD----------------------------YSTDDEPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAE 337          
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: D7FL19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL19_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 3.130e-40
Identity = 86/168 (51.19%), Postives = 102/168 (60.71%), Query Frame = 2
Query:  338 CDYEFESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNXXXXXXXXTETXXXXXXXXXXXXXXXXXDEFSMSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAE 841
            C+  +  DY C +E    F+CKDP+  CFGEE T +DD                               D+  MSYEFVPWE  E LPTV+GAVEVGTKT+VGV++TA+DV PG        GE GG GC  AN+RDGI SEIESRWSCA+K+VD  GPCQIE+TFAE
Sbjct:   37 CESAWNDDYTCSSEHGI-FNCKDPNASCFGEETTGSDD----------------------------FSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDG----CGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAE 171          
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 6.650e-40
Identity = 86/168 (51.19%), Postives = 102/168 (60.71%), Query Frame = 2
Query:  338 CDYEFESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNXXXXXXXXTETXXXXXXXXXXXXXXXXXDEFSMSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAE 841
            C+  +  DY C +E    F+CKDP+  CFGEE T +DD                               D+  MSYEFVPWE  E LPTV+GAVEVGTKT+VGV++TA+DV PG        GE GG GC  AN+RDGI SEIESRWSCA+K+VD  GPCQIE+TFAE
Sbjct:   25 CESAWNDDYTCSSEHGI-FNCKDPNASCFGEETTGSDD----------------------------FSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDG----CGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAE 159          
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.210e-39
Identity = 90/168 (53.57%), Postives = 105/168 (62.50%), Query Frame = 2
Query:  338 CDYEFESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNXXXXXXXXTETXXXXXXXXXXXXXXXXXDEFSMSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAE 841
            C   ++ DY C +E    FDC+DP+  CFGEE T +DD                               D+  MSYEFVPWE  E LPTV+GAVEVGTKT+VGV+ATA+DV  GRSSG V  GE GG GC   N+RDGI SEIESRWSCA+K+VD  GPCQIE+TFAE
Sbjct:  561 CQSPYDDDYLCSSE-YGSFDCQDPNASCFGEESTGSDD----------------------------YSTDDEPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAE 699          
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.440e-37
Identity = 86/168 (51.19%), Postives = 102/168 (60.71%), Query Frame = 2
Query:  338 CDYEFESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNXXXXXXXXTETXXXXXXXXXXXXXXXXXDEFSMSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAE 841
            C+  +  DY C +E    F+CKDP+  CFGEE T +DD                               D+  MSYEFVPWE  E LPTV+GAVEVGTKT+VGV++TA+DV PG        GE GG GC  AN+RDGI SEIESRWSCA+K+VD  GPCQIE+TFAE
Sbjct:  276 CESAWNDDYTCSSEHGT-FNCKDPNASCFGEETTGSDD----------------------------FSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDG----CGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAE 410          
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: D7G3F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F6_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 6.720e-37
Identity = 80/163 (49.08%), Postives = 102/163 (62.58%), Query Frame = 2
Query:  353 ESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNXXXXXXXXTETXXXXXXXXXXXXXXXXXDEFSMSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAE 841
            +  Y+C    ++GFDC+DP+ PCFGEE TL +++D                             D+ SMS+EF+  + +++L     AVEVGTKTDV V+ATA+D  PG SSG V  GE GG+GC PAN+RDGI++E ESRWSCASKIV  GGPCQIEY F E
Sbjct:   20 DDSYSC----TSGFDCQDPTAPCFGEEPTLPENED-----------------------------DDGSMSFEFL--DEDDLLNIGTDAVEVGTKTDVSVSATAHDTRPGSSSGDVGCGEAGGNGCTPANTRDGISNEAESRWSCASKIVPGGGPCQIEYVFGE 147          
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: D7FI77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI77_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.650e-35
Identity = 76/127 (59.84%), Postives = 89/127 (70.08%), Query Frame = 2
Query:  557 MSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAEHPGRLLEGQRARPYAGGPPQRSTGPHARILLV 937
            MSYEFVPWE  E LPTV+GAVEVGTK +VGV+ATA+D  PG SSG V  GE GG GC   N+RDGI SEIESRWSCA+K+V   GPCQIE+TFAE P  +++ Q A  + G    R+ G H    L 
Sbjct:    1 MSYEFVPWEETESLPTVDGAVEVGTKIEVGVSATAHDTRPGNSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVPDEGPCQIEFTFAE-PQHIVDIQVAF-WKGNDRTRTLGVHVNGELT 125          
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: D7FI88_ECTSI (Similar to Pappalysin-2 (Pregnancy-associated plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma protein-E1) (PAPP-E) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI88_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.710e-35
Identity = 81/168 (48.21%), Postives = 97/168 (57.74%), Query Frame = 2
Query:  338 CDYEFESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNXXXXXXXXTETXXXXXXXXXXXXXXXXXDEFSMSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAE 841
            C   ++ DY+C +E    FDC+DP+  CFGE  T +DD                               D   MSYEF+ WE  E LPTV  AVEVGTKT+VGV+ATA+DV PG S   V  GE GG GC   N+RDGI S+IESRWSCA+ +V   GPCQIE+TFAE
Sbjct:   58 CQSAYDDDYSCSSE-YGYFDCQDPTASCFGEGTTGSDD--------------------------FSFHDDYQPMSYEFLSWEETESLPTVVDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFTFAE 198          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G3F4_ECTSI2.230e-4152.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S3_ECTSI5.190e-4152.38LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KB04_9PHAE8.560e-4153.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL19_ECTSI3.130e-4051.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5F4_ECTSI6.650e-4051.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXR2_9PHAE1.210e-3953.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4F9_ECTSI1.440e-3751.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3F6_ECTSI6.720e-3749.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI77_ECTSI1.650e-3559.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI88_ECTSI1.710e-3548.21Similar to Pappalysin-2 (Pregnancy-associated plas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:524907..527588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNotch domain
Ec32 orthologEc-19_004380.5
Exons4
Model size2254
Cds size756
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.964.1prot_C-linearis_contig105.964.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig105 526131..527206 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927397.2025063-UTR-C-linearis_contig105:524906..5256821622927397.2025063-UTR-C-linearis_contig105:524906..525682Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 524907..525682 -
1690879676.4138885-UTR-C-linearis_contig105:524906..5256821690879676.4138885-UTR-C-linearis_contig105:524906..525682Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 524907..525682 -
1622927397.214698-UTR-C-linearis_contig105:525718..5261301622927397.214698-UTR-C-linearis_contig105:525718..526130Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 525719..526130 -
1690879676.4237611-UTR-C-linearis_contig105:525718..5261301690879676.4237611-UTR-C-linearis_contig105:525718..526130Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 525719..526130 -
1622927397.2457201-UTR-C-linearis_contig105:527206..5272671622927397.2457201-UTR-C-linearis_contig105:527206..527267Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 527207..527267 -
1690879676.449819-UTR-C-linearis_contig105:527206..5272671690879676.449819-UTR-C-linearis_contig105:527206..527267Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 527207..527267 -
1622927397.2596622-UTR-C-linearis_contig105:527339..5275881622927397.2596622-UTR-C-linearis_contig105:527339..527588Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 527340..527588 -
1690879676.4595335-UTR-C-linearis_contig105:527339..5275881690879676.4595335-UTR-C-linearis_contig105:527339..527588Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 527340..527588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927397.2235718-CDS-C-linearis_contig105:526130..5263061622927397.2235718-CDS-C-linearis_contig105:526130..526306Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 526131..526306 -
1690879676.4319036-CDS-C-linearis_contig105:526130..5263061690879676.4319036-CDS-C-linearis_contig105:526130..526306Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 526131..526306 -
1622927397.2331715-CDS-C-linearis_contig105:526626..5272061622927397.2331715-CDS-C-linearis_contig105:526626..527206Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 526627..527206 -
1690879676.440379-CDS-C-linearis_contig105:526626..5272061690879676.440379-CDS-C-linearis_contig105:526626..527206Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 526627..527206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig105.964.1

>prot_C-linearis_contig105.964.1 ID=prot_C-linearis_contig105.964.1|Name=mRNA_C-linearis_contig105.964.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=252bp
MEATAAPAPCDYEFESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDN
YTDDDDTTTETDDSDDLSDGDDTAIDSEDEFSMSYEFVPWETEEILPTVE
GAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIAS
EIESRWSCASKIVDSGGPCQIEYTFAEHPGRLLEGQRARPYAGGPPQRST
GPHARILLVIDLQQAWCGGRRGHHGKTVELFAYYMLNAPKGRLPAMIHTS
K*
back to top

mRNA from alignment at C-linearis_contig105:524907..527588-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig105.964.1 ID=mRNA_C-linearis_contig105.964.1|Name=mRNA_C-linearis_contig105.964.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2682bp|location=Sequence derived from alignment at C-linearis_contig105:524907..527588- (Chordaria linearis ClinC8C monoicous)
CGACGCGCCCTGCGTGGACGACGACTTGATCACAATCGAAATGATCGAGA AATGCTACGTAGGTCTTGTCGCTAGAGTATTGCCGTAGACTGCGGTGCAC CAGTTGTGAGTGTTTCCCCCGGCCTCTCCCCATTCTGATTTATTATTCAC CTTGCAGGGCATAACCGCTGCGCAGGCTCGTACGTTCTGGAATAGGGCAC TCGCACTCTTACCCGACGCTAAAGCATTCTCCTTGCAGAGGGTACCTTAG CTGTACCTCCCCAAGCTTTACACGCGTCTAAATCATCCCCTACAACTACA TACGGTACTCCGAACCTCCAGGTTTCCCACATCGGTAACGGGAAGTGCAA CAGCGGGAACAACAACGAGCTGTGTCTCTACGATGGAGGCGACTGCTGCT CCTGCACCTTGCGACTACGAATTCGAAAGCGATTACGCGTGCTTCAACGA GGACTCCGCCGGCTTCGACTGCAAAGACCCGAGCGTTCCGTGCTTCGGCG AGGAAAAGACCCTGAACGACGACGACGATAACTACACCGATGACGACGAC ACCACGACCGAGACTGACGACTCCGACGACTTGAGCGACGGCGACGACAC CGCGATCGACAGCGAAGACGAATTCTCCATGTCGTACGAGTTTGTCCCCT GGGAAACGGAGGAAATCCTCCCAACCGTCGAAGGCGCCGTCGAGGTCGGC ACCAAGACTGACGTCGGCGTGACGGCCACCGCTTACGACGTGCACCCCGG CAGGAGCAGCGGCATGGTTTGCCTCGGCGAGGAAGGAGGCGATGGCTGCG CGCCGGCCAACTCGCGCGACGGCATTGCCAGCGAGATCGAGTCCAGGTGG TCTTGCGCCTCGAAGATCGTGGACAGCGGAGGTCCGTGCCAGATCGAGTA CACATTCGCCGAGCATCCAGGTCGCCTTCTGGAAGGGCAACGTGCGCGAC CGTACGCTGGAGGTGAGGTTGTGGTTGCGTTTAACGACGGGCAGCTTCCA CCCCTCTCTCTCCCTCAGGAGTGTACCCAAGTAGTTGTGCCTCTGTATCC CCGCCCAGTTGTGAGCGGCGCGGTAGGCTGGGATGATCGGCGTGGAGTAG TTCGGGGCCCACCCATCGACATCGGAATTGAATGCTGCCCTTACGAGAGG GGGTCTGACCCACTATACATATGCGATTATTTATTTCCTCCTCAGTAGCC GGACTGTGCGCTGAAACCATTGTTTGTGTTCTGCTGGTTCTGAGTCGATT TGCCCCGAAACCCGTCGTCCGTCCGTCCACAGGTCCACCTCAACGGTCAA CTGGCCCACACGCACGAATCCTTCTCGTGATCGACCTTCAACAGGCTTGG TGTGGTGGCCGACGAGGTCACCACGGCAAGACTGTTGAATTGTTCGCATA CTACATGCTAAATGCACCGAAAGGGCGGCTGCCAGCTATGATACATACCA GTAAATAAAGCAGTGAAAGCAAGCCTGGTTGGCTCCTCGAAATTCGAATT GACAAGCAAGAGGCCGAAACTGAAAACCCCAAAAGGGATCCTGCTCTCCG ATCCCGCCTCGATCAAACGGCGGGCTCTTCGCCATCGGGAGAAGCCACGC ACACATTGCCTTTAAACCATCCTGTGCAAGTGACTGGAGTCAATTGGGCT TGTGTCGGACGATTGGATCGGCCTCATCGAGGTCAGTGTAGCGTGGAGAG TTGGGTTGGCTCCCTGGTAAAAAATGGTGTGATGGAGTGTTCCCCGCAAC TCTGCGATGATTGCTCTGCATGCTTCCAGTCCCTGCTACGCACTCCGAGT CGTTCGTCCTTCCATTGGCTATCATCCTCTGTGAGCTGAGTAGTATTTTG AGTTGTGGAAAAGGTCGGTCTCCTACGGACCGATGTCATCACCCAACGGT TGCTTCAGTACAAATAAATTTGCACGCATGCATGCCATGCCGTGGACAAT AGCATGTCGTCCTCTCCCACTCGTCCAGAGAATAGCGTTGGAAGCATGGG CTTCCGCCACTCCCGGACCGCTAGTTTTTCGGACAGATTGGAACAGCCGC TCATTTCGCTCATGTCGTTCATGCCTGCCGGGACCGCTTCTTGTACCAAT ATTTCAGGTGCTCATCTTCGTCAAGCCCTGAGCGCGGCGCTTCATGGACT TAGTAGCATTTGCCAGGAGGCCCTTGCCGCTGCGCATGTTGTTGATTGCC GTTTGTGGGGGGGGCTGAGACCGATGATGCGTTGATAGGGTGAAGAGTTT GTGTCGTCGGCTGGGGTGCGCTGACGTCGCATCCTGAAATCCGTCCAAGT TTTGATCAGGAGAGTTCGTCTGTGTGCCCAACTGTGCCCGTTTTTGGGAG GTCAATATGTACGTCGTCGTGTAGTTCCTCCGCTGCCAAAGGTGGACATT TTGAGCAAACGAACACCAGACATGCTTCCACGGAGGAAGAGGAGAGGTTG CAACGATACATTTGTATTTGTTTCGAATTTGTTTTTGCGCGTGGTTTGTC CTTGCCTTTCCCTGGCCTTGGCTGGCGCCTGTCTGCAGCATCCCAAACAA GATGATATGGGTGTTTTCGTGGAAATGTGAATGTACACACGGTAGACTGG CCGATATAAAAAGCAGAAAGAAGTCGATTGCACATTATTGGGTGACGTCA TGACCTCGTCATGACGCAAGGTTATGTATGCC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig105:524907..527588-

>mRNA_C-linearis_contig105.964.1 ID=mRNA_C-linearis_contig105.964.1|Name=mRNA_C-linearis_contig105.964.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1512bp|location=Sequence derived from alignment at C-linearis_contig105:524907..527588- (Chordaria linearis ClinC8C monoicous)
ATGGAGGCGACTGCTGCTCCTGCACCTTGCGACTACGAATTCGAAAGCGA
TTACGCGTGCTTCAACGAGGACTCCGCCGGCTTCGACTGCAAAGACCCGA
GCGTTCCGTGCTTCGGCGAGGAAAAGACCCTGAACGACGACGACGATAAC
TACACCGATGACGACGACACCACGACCGAGACTGACGACTCCGACGACTT
GAGCGACGGCGACGACACCGCGATCGACAGCGAAGACGAATTCTCCATGT
CGTACGAGTTTGTCCCCTGGGAAACGGAGGAAATCCTCCCAACCGTCGAA
GGCGCCGTCGAGGTCGGCACCAAGACTGACGTCGGCGTGACGGCCACCGC
TTACGACGTGCACCCCGGCAGGAGCAGCGGCATGGTTTGCCTCGGCGAGG
AAGGAGGCGATGGCTGCGCGCCGGCCAACTCGCGCGACGGCATTGCCAGC
GAGATCGAGTCCAGGTGGTCTTGCGCCTCGAAGATCGTGGACAGCGGAGG
TCCGTGCCAGATCGAGTACACATTCGCCGAGCATCCAGGTCGCCTTCTGG
AAGGGCAACGTGCGCGACCGTACGCTGGAGATGGAGGCGACTGCTGCTCC
TGCACCTTGCGACTACGAATTCGAAAGCGATTACGCGTGCTTCAACGAGG
ACTCCGCCGGCTTCGACTGCAAAGACCCGAGCGTTCCGTGCTTCGGCGAG
GAAAAGACCCTGAACGACGACGACGATAACTACACCGATGACGACGACAC
CACGACCGAGACTGACGACTCCGACGACTTGAGCGACGGCGACGACACCG
CGATCGACAGCGAAGACGAATTCTCCATGTCGTACGAGTTTGTCCCCTGG
GAAACGGAGGAAATCCTCCCAACCGTCGAAGGCGCCGTCGAGGTCGGCAC
CAAGACTGACGTCGGCGTGACGGCCACCGCTTACGACGTGCACCCCGGCA
GGAGCAGCGGCATGGTTTGCCTCGGCGAGGAAGGAGGCGATGGCTGCGCG
CCGGCCAACTCGCGCGACGGCATTGCCAGCGAGATCGAGTCCAGGTGGTC
TTGCGCCTCGAAGATCGTGGACAGCGGAGGTCCGTGCCAGATCGAGTACA
CATTCGCCGAGCATCCAGGTCGCCTTCTGGAAGGGCAACGTGCGCGACCG
TACGCTGGAGGTCCACCTCAACGGTCAACTGGCCCACACGCACGAATCCT
TCTCGTGATCGACCTTCAACAGGCTTGGTGTGGTGGCCGACGAGGTCACC
ACGGCAAGACTGTTGAATTGTTCGCATACTACATGCTAAATGCACCGAAA
GGGCGGCTGCCAGCTATGATACATACCAGTAAATAAGTCCACCTCAACGG
TCAACTGGCCCACACGCACGAATCCTTCTCGTGATCGACCTTCAACAGGC
TTGGTGTGGTGGCCGACGAGGTCACCACGGCAAGACTGTTGAATTGTTCG
CATACTACATGCTAAATGCACCGAAAGGGCGGCTGCCAGCTATGATACAT
ACCAGTAAATAA
back to top