mRNA_C-linearis_contig105.964.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI) HSP 1 Score: 169 bits (427), Expect = 2.230e-41 Identity = 89/168 (52.98%), Postives = 106/168 (63.10%), Query Frame = 2 Query: 338 CDYEFESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNXXXXXXXXTETXXXXXXXXXXXXXXXXXDEFSMSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAE 841
C+ ++ DY+C +E FDCKDP+ CFGEE T +DD D+ MSYEFVPWE E LPTV+GAVEVGTKT+VGV++TA+DV PG SSG GE GG GC N+RDGI SEIESRWSCA+K+VD GPCQIE+TFAE
Sbjct: 299 CESPYDDDYSCSSE-YGSFDCKDPNASCFGEEPTGSDD----------------------------FSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGMSSGDAGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAE 437
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI) HSP 1 Score: 162 bits (410), Expect = 5.190e-41 Identity = 88/168 (52.38%), Postives = 107/168 (63.69%), Query Frame = 2 Query: 338 CDYEFESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNXXXXXXXXTETXXXXXXXXXXXXXXXXXDEFSMSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAE 841
C+ ++ DY C ED A FDCKDPS CFGEE + + DD+ TE YEFVPWE E LPTV+ AVEVGTKT+V V+ATA+DV GRSSG V GE GG+GCA N+RDGI++EIESRWSCA+K++D GPCQIE++FAE
Sbjct: 87 CESVWDDDYTC-GED-AFFDCKDPSAACFGEETAMGNGDDSTGRSSDPDTE------------------------YEFVPWEQTEPLPTVDDAVEVGTKTEVSVSATAHDVRAGRSSGEVGCGEAGGNGCAANNARDGISTEIESRWSCAAKLLDDEGPCQIEFSFAE 228
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE) HSP 1 Score: 168 bits (425), Expect = 8.560e-41 Identity = 90/168 (53.57%), Postives = 105/168 (62.50%), Query Frame = 2 Query: 338 CDYEFESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNXXXXXXXXTETXXXXXXXXXXXXXXXXXDEFSMSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAE 841
C ++ DY C +E FDC+DP+ CFGEE T +DD D+ MSYEFVPWE E LPTV+GAVEVGTKT+VGV+ATA+DV GRSSG V GE GG GC N+RDGI SEIESRWSCA+K+VD GPCQIE+TFAE
Sbjct: 199 CQSPYDDDYLCSSE-YGSFDCQDPNASCFGEESTGSDD----------------------------YSTDDEPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAE 337
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: D7FL19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL19_ECTSI) HSP 1 Score: 157 bits (396), Expect = 3.130e-40 Identity = 86/168 (51.19%), Postives = 102/168 (60.71%), Query Frame = 2 Query: 338 CDYEFESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNXXXXXXXXTETXXXXXXXXXXXXXXXXXDEFSMSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAE 841
C+ + DY C +E F+CKDP+ CFGEE T +DD D+ MSYEFVPWE E LPTV+GAVEVGTKT+VGV++TA+DV PG GE GG GC AN+RDGI SEIESRWSCA+K+VD GPCQIE+TFAE
Sbjct: 37 CESAWNDDYTCSSEHGI-FNCKDPNASCFGEETTGSDD----------------------------FSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDG----CGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAE 171
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI) HSP 1 Score: 157 bits (396), Expect = 6.650e-40 Identity = 86/168 (51.19%), Postives = 102/168 (60.71%), Query Frame = 2 Query: 338 CDYEFESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNXXXXXXXXTETXXXXXXXXXXXXXXXXXDEFSMSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAE 841
C+ + DY C +E F+CKDP+ CFGEE T +DD D+ MSYEFVPWE E LPTV+GAVEVGTKT+VGV++TA+DV PG GE GG GC AN+RDGI SEIESRWSCA+K+VD GPCQIE+TFAE
Sbjct: 25 CESAWNDDYTCSSEHGI-FNCKDPNASCFGEETTGSDD----------------------------FSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDG----CGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAE 159
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE) HSP 1 Score: 168 bits (425), Expect = 1.210e-39 Identity = 90/168 (53.57%), Postives = 105/168 (62.50%), Query Frame = 2 Query: 338 CDYEFESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNXXXXXXXXTETXXXXXXXXXXXXXXXXXDEFSMSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAE 841
C ++ DY C +E FDC+DP+ CFGEE T +DD D+ MSYEFVPWE E LPTV+GAVEVGTKT+VGV+ATA+DV GRSSG V GE GG GC N+RDGI SEIESRWSCA+K+VD GPCQIE+TFAE
Sbjct: 561 CQSPYDDDYLCSSE-YGSFDCQDPNASCFGEESTGSDD----------------------------YSTDDEPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAE 699
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI) HSP 1 Score: 157 bits (397), Expect = 1.440e-37 Identity = 86/168 (51.19%), Postives = 102/168 (60.71%), Query Frame = 2 Query: 338 CDYEFESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNXXXXXXXXTETXXXXXXXXXXXXXXXXXDEFSMSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAE 841
C+ + DY C +E F+CKDP+ CFGEE T +DD D+ MSYEFVPWE E LPTV+GAVEVGTKT+VGV++TA+DV PG GE GG GC AN+RDGI SEIESRWSCA+K+VD GPCQIE+TFAE
Sbjct: 276 CESAWNDDYTCSSEHGT-FNCKDPNASCFGEETTGSDD----------------------------FSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDG----CGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAE 410
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: D7G3F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F6_ECTSI) HSP 1 Score: 148 bits (373), Expect = 6.720e-37 Identity = 80/163 (49.08%), Postives = 102/163 (62.58%), Query Frame = 2 Query: 353 ESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNXXXXXXXXTETXXXXXXXXXXXXXXXXXDEFSMSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAE 841
+ Y+C ++GFDC+DP+ PCFGEE TL +++D D+ SMS+EF+ + +++L AVEVGTKTDV V+ATA+D PG SSG V GE GG+GC PAN+RDGI++E ESRWSCASKIV GGPCQIEY F E
Sbjct: 20 DDSYSC----TSGFDCQDPTAPCFGEEPTLPENED-----------------------------DDGSMSFEFL--DEDDLLNIGTDAVEVGTKTDVSVSATAHDTRPGSSSGDVGCGEAGGNGCTPANTRDGISNEAESRWSCASKIVPGGGPCQIEYVFGE 147
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: D7FI77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI77_ECTSI) HSP 1 Score: 142 bits (358), Expect = 1.650e-35 Identity = 76/127 (59.84%), Postives = 89/127 (70.08%), Query Frame = 2 Query: 557 MSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAEHPGRLLEGQRARPYAGGPPQRSTGPHARILLV 937
MSYEFVPWE E LPTV+GAVEVGTK +VGV+ATA+D PG SSG V GE GG GC N+RDGI SEIESRWSCA+K+V GPCQIE+TFAE P +++ Q A + G R+ G H L
Sbjct: 1 MSYEFVPWEETESLPTVDGAVEVGTKIEVGVSATAHDTRPGNSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVPDEGPCQIEFTFAE-PQHIVDIQVAF-WKGNDRTRTLGVHVNGELT 125
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Match: D7FI88_ECTSI (Similar to Pappalysin-2 (Pregnancy-associated plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma protein-E1) (PAPP-E) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI88_ECTSI) HSP 1 Score: 145 bits (367), Expect = 1.710e-35 Identity = 81/168 (48.21%), Postives = 97/168 (57.74%), Query Frame = 2 Query: 338 CDYEFESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNXXXXXXXXTETXXXXXXXXXXXXXXXXXDEFSMSYEFVPWETEEILPTVEGAVEVGTKTDVGVTATAYDVHPGRSSGMVCLGEEGGDGCAPANSRDGIASEIESRWSCASKIVDSGGPCQIEYTFAE 841
C ++ DY+C +E FDC+DP+ CFGE T +DD D MSYEF+ WE E LPTV AVEVGTKT+VGV+ATA+DV PG S V GE GG GC N+RDGI S+IESRWSCA+ +V GPCQIE+TFAE
Sbjct: 58 CQSAYDDDYSCSSE-YGYFDCQDPTASCFGEGTTGSDD--------------------------FSFHDDYQPMSYEFLSWEETESLPTVVDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFTFAE 198 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.964.1 >prot_C-linearis_contig105.964.1 ID=prot_C-linearis_contig105.964.1|Name=mRNA_C-linearis_contig105.964.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=252bp MEATAAPAPCDYEFESDYACFNEDSAGFDCKDPSVPCFGEEKTLNDDDDNback to top mRNA from alignment at C-linearis_contig105:524907..527588- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.964.1 ID=mRNA_C-linearis_contig105.964.1|Name=mRNA_C-linearis_contig105.964.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2682bp|location=Sequence derived from alignment at C-linearis_contig105:524907..527588- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:524907..527588- >mRNA_C-linearis_contig105.964.1 ID=mRNA_C-linearis_contig105.964.1|Name=mRNA_C-linearis_contig105.964.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1512bp|location=Sequence derived from alignment at C-linearis_contig105:524907..527588- (Chordaria linearis ClinC8C monoicous)back to top |