mRNA_C-linearis_contig105.962.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig105.962.1
Unique NamemRNA_C-linearis_contig105.962.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:507741..508070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size332
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927391.8458002-UTR-C-linearis_contig105:507740..5077641622927391.8458002-UTR-C-linearis_contig105:507740..507764Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 507741..507764 +
1690879672.8481076-UTR-C-linearis_contig105:507740..5077641690879672.8481076-UTR-C-linearis_contig105:507740..507764Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 507741..507764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927391.8623607-CDS-C-linearis_contig105:507764..5080701622927391.8623607-CDS-C-linearis_contig105:507764..508070Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 507765..508070 +
1690879672.8610091-CDS-C-linearis_contig105:507764..5080701690879672.8610091-CDS-C-linearis_contig105:507764..508070Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 507765..508070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.962.1prot_C-linearis_contig105.962.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig105 507765..508070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig105.962.1

>prot_C-linearis_contig105.962.1 ID=prot_C-linearis_contig105.962.1|Name=mRNA_C-linearis_contig105.962.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=102bp
MKHLSLQRPSARPSLDSNPTAIRNPTAATQNSDHASTAPQDGRRFHLTVP
TKTKEETRKRHHTADRGRPACQGPPRQDKTKQNNPKPNQNPSMLARNQRR
KQ
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mRNA from alignment at C-linearis_contig105:507741..508070+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig105.962.1 ID=mRNA_C-linearis_contig105.962.1|Name=mRNA_C-linearis_contig105.962.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at C-linearis_contig105:507741..508070+ (Chordaria linearis ClinC8C monoicous)
GCCGCCTTGCTTGCTACACAAACTATGAAACATTTATCCTTACAACGACC
GTCCGCCCGTCCTAGTCTCGATAGTAATCCAACGGCAATCAGAAACCCGA
CCGCTGCTACACAAAACAGCGATCACGCTTCGACAGCACCACAAGATGGA
AGACGTTTCCACCTGACCGTCCCGACAAAGACAAAAGAAGAAACACGCAA
GCGACACCACACGGCCGACCGCGGCAGGCCAGCCTGCCAAGGCCCCCCAC
GACAAGACAAAACAAAACAAAACAACCCAAAACCAAACCAAAACCCATCC
ATGTTGGCACGCAACCAACGCCGTAAGCAA
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Coding sequence (CDS) from alignment at C-linearis_contig105:507741..508070+

>mRNA_C-linearis_contig105.962.1 ID=mRNA_C-linearis_contig105.962.1|Name=mRNA_C-linearis_contig105.962.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at C-linearis_contig105:507741..508070+ (Chordaria linearis ClinC8C monoicous)
ATGAAACATTTATCCTTACAACGACCGTCCGCCCGTCCTAGTCTCGATAG
TAATCCAACGGCAATCAGAAACCCGACCGCTGCTACACAAAACAGCGATC
ACGCTTCGACAGCACCACAAGATGGAAGACGTTTCCACCTGACCGTCCCG
ACAAAGACAAAAGAAGAAACACGCAAGCGACACCACACGGCCGACCGCGG
CAGGCCAGCCTGCCAAGGCCCCCCACGACAAGACAAAACAAAACAAAACA
ACCCAAAACCAAACCAAAACCCATCCATGTTGGCACGCAACCAACGCCGT
AAGCAAATGAAACATTTATCCTTACAACGACCGTCCGCCCGTCCTAGTCT
CGATAGTAATCCAACGGCAATCAGAAACCCGACCGCTGCTACACAAAACA
GCGATCACGCTTCGACAGCACCACAAGATGGAAGACGTTTCCACCTGACC
GTCCCGACAAAGACAAAAGAAGAAACACGCAAGCGACACCACACGGCCGA
CCGCGGCAGGCCAGCCTGCCAAGGCCCCCCACGACAAGACAAAACAAAAC
AAAACAACCCAAAACCAAACCAAAACCCATCCATGTTGGCACGCAACCAA
CGCCGTAAGCAA
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