mRNA_C-linearis_contig105.960.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig105.960.1 vs. uniprot
Match: A0A6H5JT89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT89_9PHAE) HSP 1 Score: 357 bits (915), Expect = 2.590e-95 Identity = 220/379 (58.05%), Postives = 250/379 (65.96%), Query Frame = 2
Query: 1604 QAYEAELAERYRQGGRKARFGNGGRTGATGAPASAAAARGGR---PSSGGGATWEGAGA---PPSHGGPGWREPAEYWGGG-------PGYHPWGGP-MMP-EQHHLGSPP-VSKRHLLPWPIEKIEEMEAMGAGVRAGEDDETWVRIAAAMSSSVSEAKDQWASYCEMMRHKRWMSGSGAGDGSAGSSRAMMPVVPAGGPPAPPPWAAGEHPSWRYRTE---------AAAGYPS----RGGVPPPEAGAYRGALAYS-APPTGPMPGPPGRPASVVGRCAFCGEMWNTNSPTAAAAIQAARWCCPACESGAQPGPMPRHWEDEEGYIAMPRIAPGHHHPYYSAXXXXXXXXXXXXVAAGEHPFHGRSPRGGWPERSR 2650
QAY+AELAERYRQGGRKARFG GR G + +A+ GGR PSSGGG W+ + A P + GG W E +YWGG PGY WGG M+P EQH L PP VS+RHLLPWP+EKI+EMEAMGAG R GEDD+ WVRIAA MSS+++EAKDQWA+YCEMMRH+RWMSGS + G PP P WAA +HPSWRYR+E AAAGYP R +PPPEAG YR + YS AP GP P P RP+SVVGRC+FCGE W+T+SP AAAAI+A RWCCPACESG QPGPMPRHWEDE+GYIAMPR+ PG H PYYS XXXX G GR P W ER R
Sbjct: 575 QAYDAELAERYRQGGRKARFGMAGRVGVS------SASHGGRGRPPSSGGGPPWDASSAVERPLAGGGGRWSE--QYWGGHEPRGAMPPGYQRWGGTTMVPREQHDLAGPPSVSRRHLLPWPLEKIKEMEAMGAG-RGGEDDDAWVRIAARMSSTIAEAKDQWAAYCEMMRHERWMSGSSSAXXXXXXXXXXXXXXXXGAPPGPARWAAEQHPSWRYRSEPTGVSAAAAAAAGYPGGMPPRSRLPPPEAGPYRQPVGYSVAPGAGPSP-PSARPSSVVGRCSFCGEAWSTDSPAAAAAIKAGRWCCPACESGTQPGPMPRHWEDEDGYIAMPRVMPGQH-PYYSVEAAAASXXXXEAAIRG-----GRHPPAAWVERGR 937
BLAST of mRNA_C-linearis_contig105.960.1 vs. uniprot
Match: D7G3G2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G2_ECTSI) HSP 1 Score: 313 bits (801), Expect = 9.260e-82 Identity = 211/406 (51.97%), Postives = 232/406 (57.14%), Query Frame = 2
Query: 1604 QAYEAELAERYRQGGRKARFGNGGRTGATGAPASAAAARGGRPSSGGGATWEGAGAPPSHGGPG---------------------------WREPAEYWGGG-------PGYHPWGGPMMP-EQHHLGSPP-VSKRHLLPWPIEKIEEMEAMGAGVRAGEDDETWVRIAAAMSSSVSEAKDQWASYCEMMRHKRWMSGSGAGDGSAGSSRAMMPVVPAGGPPAPPPWAAGEHPS-WRYRTEAAAGYPSRGGV-------------PPPEAGAYRGAL-AYS-APPTGPMPGPPGRPASVVGRCAFCGEMWNTNSPTAAAAIQAARWCCPACESGAQPGPMPRHWEDEEGYIAMPRIAPGHHHPYYSAXXXXXXXXXXXXVAAGEHPFHGRSPRGGWPERSRPHGVG 2665
QAY+AELAERYRQGGRKARFG GR G + A SHG W E EYWGG PGY WGG M+P EQH L PP VS+RHLLPWP+EKIEEMEAMGAG R GEDDE WVRIAA MSS+++EAKDQWA+YCEMMRH+RWMSGS G PP P WAA +HPS WRYR+E PPPEAG YR ++ YS AP GP P PP R +SVVGRC+FCGE W+T+SP AAAAI+A RWCCPACESG QPGPMPRHWEDE+GYIAMPR+ PG H PYYS XXXXXXXXX R P W ER RP VG
Sbjct: 571 QAYDAELAERYRQGGRKARFGMAGRVGVSSA---------------------------SHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWSE-HEYWGGHEPGGAVPPGYQRWGGMMVPPEQHDLAGPPSVSRRHLLPWPLEKIEEMEAMGAG-RGGEDDEDWVRIAARMSSTIAEAKDQWAAYCEMMRHQRWMSGSSXXXXXXXXXXXXXXXXXXGAPPGPARWAAEQHPSSWRYRSEPTGASAXXXXXXXXXXXXXXXXXRPPPEAGPYRQSVQGYSVAPGAGPSP-PPARSSSVVGRCSFCGEAWSTDSPAAAAAIKAGRWCCPACESGTQPGPMPRHWEDEDGYIAMPRVMPGQH-PYYSVEAAXXXXXXXXXXX-----XXXRHPPAAWAERGRPPTVG 940
BLAST of mRNA_C-linearis_contig105.960.1 vs. uniprot
Match: D7G8Z3_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z3_ECTSI) HSP 1 Score: 70.5 bits (171), Expect = 3.730e-8 Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 2
Query: 116 TTPRLRKSCDPCSLAKRRCDGQPQCSLCRKKGLPCVYGERQKSGPKGRK 262
+T ++R+SCD C+LAKRRCDG+ +CSLC KK + CVY RQKSGPKG K
Sbjct: 20 STLKMRRSCDACALAKRRCDGELRCSLCCKKSIRCVYSTRQKSGPKGHK 68
BLAST of mRNA_C-linearis_contig105.960.1 vs. uniprot
Match: A0A6H5JWH9_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWH9_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 2.060e-7 Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 2
Query: 116 TTPRLRKSCDPCSLAKRRCDGQPQCSLCRKKGLPCVYGERQKSGPKGRK 262
+T ++R+SCD C+LAKRRCDG+ +C LC KK + CVY RQKSGPKG K
Sbjct: 20 STLKMRRSCDACALAKRRCDGELRCLLCCKKSIRCVYSTRQKSGPKGHK 68 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.960.1 >prot_C-linearis_contig105.960.1 ID=prot_C-linearis_contig105.960.1|Name=mRNA_C-linearis_contig105.960.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1875bp MEPGPTAGPRRAAGGRRERNVSTTPRLRKSCDPCSLAKRRCDGQPQCSLCback to top mRNA from alignment at C-linearis_contig105:476400..491569+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.960.1 ID=mRNA_C-linearis_contig105.960.1|Name=mRNA_C-linearis_contig105.960.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=15170bp|location=Sequence derived from alignment at C-linearis_contig105:476400..491569+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:476400..491569+ >mRNA_C-linearis_contig105.960.1 ID=mRNA_C-linearis_contig105.960.1|Name=mRNA_C-linearis_contig105.960.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=11250bp|location=Sequence derived from alignment at C-linearis_contig105:476400..491569+ (Chordaria linearis ClinC8C monoicous)back to top |