mRNA_C-linearis_contig105.958.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig105.958.1
Unique NamemRNA_C-linearis_contig105.958.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: A0A6H5JSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 8.140e-16
Identity = 53/137 (38.69%), Postives = 77/137 (56.20%), Query Frame = 1
Query:    4 KGTSALTMAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKG---VVMAKALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAVRHDNEEAVVRLLAAGAVQP 405
            KG  AL +AI + HVDVF LL++AGAD ++A+  G TP M   + +E++ +G    VMA+                  AL +AA+    +++ +LL+KAP T++  T  G TPLY A      +AV  LL+AGA QP
Sbjct:  196 KGVRALHVAINHYHVDVFRLLLKAGADPDSANGKGLTPLMLTCI-LEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTDLIDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQP 331          
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: D8LSK8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK8_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.320e-14
Identity = 52/137 (37.96%), Postives = 76/137 (55.47%), Query Frame = 1
Query:    4 KGTSALTMAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKG---VVMAKALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAVRHDNEEAVVRLLAAGAVQP 405
            KG  AL +AI + +VDVF LL++AGAD ++A+  G TP M   + +E++ +G    VMA+                  AL +AA+     ++ +LL+KAP T++  T  G TPLY A      +AV  LL+AGA QP
Sbjct:  188 KGVRALHVAINHYNVDVFRLLLKAGADPDSANGKGLTPLMLTCI-LEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTNLIDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQP 323          
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: A0A433RX48_9BACL (Ankyrin n=1 Tax=Kurthia sp. 3B1D TaxID=1562256 RepID=A0A433RX48_9BACL)

HSP 1 Score: 62.8 bits (151), Expect = 2.950e-9
Identity = 43/132 (32.58%), Postives = 65/132 (49.24%), Query Frame = 1
Query:    1 KKGTSALTMAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKGVVMAKALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAV----RHDNEEAVVRLL 384
            ++G SAL MA  N H+++ +LL+EAGAD+N  D    TP++ A      A +G      L+    +P ITN  G   L  A   GS + V  +L+     V H+   G T L  A+       N + +++LL
Sbjct:   58 RRGRSALMMATYNHHIELVQLLIEAGADVNQQDDLKNTPYLYA------AAEGYTELLELMNGKVNPYITNRYGASGLISACERGSVDAVEWILKHTASDVDHINNLGWTALLEAIILGDGSGNYQQIIKLL 183          
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: J3A5E7_9BACL (Ankyrin repeat-containing protein n=30 Tax=Paenibacillaceae TaxID=186822 RepID=J3A5E7_9BACL)

HSP 1 Score: 62.4 bits (150), Expect = 5.840e-9
Identity = 42/115 (36.52%), Postives = 59/115 (51.30%), Query Frame = 1
Query:    4 KGTSALTMAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKGVVMAKALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAV 348
            +G ++  +A+ +  +D+F LLVE GA++N  D     P + AS     A   +   KA + AGAD TITN  G  AL  AA  G  E+V  LL  +   + H+   G T L  AV
Sbjct:   94 RGRTSAMIAVHSAQLDIFNLLVERGANINIRDNNLDNPLLFAS-----AAGQLAFVKASIAAGADTTITNRFGGTALIPAADRGHVEIVKELLTSSDVNIDHVNRLGWTALLEAV 203          
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: A0A3S9V6Y4_9BACL (Ankyrin repeat domain-containing protein n=1 Tax=Paenibacillus lutimineralis TaxID=2707005 RepID=A0A3S9V6Y4_9BACL)

HSP 1 Score: 60.5 bits (145), Expect = 2.020e-8
Identity = 47/135 (34.81%), Postives = 69/135 (51.11%), Query Frame = 1
Query:    7 GTSALTMAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKGVVMAKALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAV-----RHDNEEAVVRLLAAGA 396
            G ++  +A+    +++FELLVE GA++N  D     P + +      AE  +   KA + AGAD TITN  G  AL  AA  G  E+V  LL  +   V+H+   G T L  A+       D+++ V  L+A GA
Sbjct:   56 GRTSAMIAVHTDQLEMFELLVEHGANINIRDDRLDNPLLYSG-----AEGKMDFLKAAIAAGADTTITNRFGGTALIPAADRGHVEIVRELLANSDVDVNHINNLGWTALLEAIILGDGGKDHQQIVDLLIAGGA 185          
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: UPI000497BAC9 (ankyrin repeat domain-containing protein n=1 Tax=Kurthia huakuii TaxID=1421019 RepID=UPI000497BAC9)

HSP 1 Score: 60.1 bits (144), Expect = 2.940e-8
Identity = 45/137 (32.85%), Postives = 67/137 (48.91%), Query Frame = 1
Query:    1 KKGTSALTMAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKGVVMAKALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAV-----RHDNEEAVVRLLAAGA 396
            ++G SAL MA  N HV++ E+L+EAGA++N  D    TP++ A      A +G V    L+    +P ITN  G   L  A   G+ E V  +L      + H+   G T L  A+       + ++ +  LL AGA
Sbjct:   58 RRGRSALMMATYNHHVELAEILIEAGANVNQQDDLKNTPYLYA------AAEGYVDILELMNGKINPHITNRYGGNGLIPACERGAVETVAWILTHTASDIDHINNLGWTALLEAIILGDGSKNYQQIIKLLLEAGA 188          
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: UPI001EF60010 (MFS transporter n=1 Tax=Lysinibacillus fusiformis TaxID=28031 RepID=UPI001EF60010)

HSP 1 Score: 60.1 bits (144), Expect = 3.550e-8
Identity = 43/111 (38.74%), Postives = 58/111 (52.25%), Query Frame = 1
Query:   16 ALTMAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKGVVMAKALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAV 348
            AL+  +     DV ++L+E GAD+N  D     PF+ A      AE  + + +  + AGADPTI N  G IAL  AA  G  E V  +LE+    V+HM  PG T L  A+
Sbjct:   81 ALSNLVGALFPDVVKVLIEHGADINRRDHMENNPFLYAG-----AEGYLKILRLTIEAGADPTIFNRFGGIALIPAAEHGYVENVQEILEQTNVDVNHMNKPGWTALLEAI 186          
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: UPI0016438F5D (ankyrin repeat domain-containing protein n=1 Tax=Brevibacillus brevis TaxID=1393 RepID=UPI0016438F5D)

HSP 1 Score: 58.2 bits (139), Expect = 1.160e-7
Identity = 41/115 (35.65%), Postives = 57/115 (49.57%), Query Frame = 1
Query:    4 KGTSALTMAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKGVVMAKALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAV 348
            +G ++  +A+    +D+F LLV  GA++N  D     P + AS     A   +   KA + AGAD TITN  G  AL  AA  G  E+V  LL  +   + H+   G T L  AV
Sbjct:   36 RGRTSAMIAVHTAKLDIFNLLVGHGANINIRDNNLDNPLLFAS-----AAGQLAFVKASIAAGADTTITNRFGGTALIPAADRGHVEIVKELLTTSDVNIDHVNRLGWTALLEAV 145          
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: UPI0015BE6531 (ankyrin repeat domain-containing protein n=2 Tax=unclassified Paenibacillus TaxID=185978 RepID=UPI0015BE6531)

HSP 1 Score: 58.2 bits (139), Expect = 1.690e-7
Identity = 45/135 (33.33%), Postives = 69/135 (51.11%), Query Frame = 1
Query:    1 KKGTSALTMAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKGVVMAKALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAVRHDN----EEAVVRLLAAG 393
            ++G +A  +A+    +++FELL++ GA+LN  D     P + +      AE  +   KA + AGAD T+TN  G  AL  AA  G  E+V  LL  +   V+H+   G T L  A+   +     + +V LL AG
Sbjct:   70 REGRTAAMIAVHTDQLEMFELLIKQGANLNIRDNRLDNPLLYSG-----AEGKMDFLKAAIAAGADTTMTNRFGGTALIPAADRGHVEIVRELLANSDVDVNHVNNLGWTALLEAILLGDGGKGHQQIVDLLIAG 199          
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: D8LMB0_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB0_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.870e-7
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  181 LRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAVRHDNEEAVVRLLAAGA 396
            L AGADP + +++G +A+ +AA+    +VV +LL KAP T++H T  G TPL  A     E  +  LL+AGA
Sbjct:   24 LLAGADPALEDEDGGLAIHFAAARCDTQVVQLLLSKAPSTLNHATHFGWTPLAAAADGGRESTMCLLLSAGA 95          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5JSC7_9PHAE8.140e-1638.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSK8_ECTSI1.320e-1437.96Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A433RX48_9BACL2.950e-932.58Ankyrin n=1 Tax=Kurthia sp. 3B1D TaxID=1562256 Rep... [more]
J3A5E7_9BACL5.840e-936.52Ankyrin repeat-containing protein n=30 Tax=Paeniba... [more]
A0A3S9V6Y4_9BACL2.020e-834.81Ankyrin repeat domain-containing protein n=1 Tax=P... [more]
UPI000497BAC92.940e-832.85ankyrin repeat domain-containing protein n=1 Tax=K... [more]
UPI001EF600103.550e-838.74MFS transporter n=1 Tax=Lysinibacillus fusiformis ... [more]
UPI0016438F5D1.160e-735.65ankyrin repeat domain-containing protein n=1 Tax=B... [more]
UPI0015BE65311.690e-733.33ankyrin repeat domain-containing protein n=2 Tax=u... [more]
D8LMB0_ECTSI1.870e-743.06Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:471885..472289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue3.4e-11
Seed eggNOG ortholog2880.D8LSK8
KEGG koko:K10380
KEGG Pathwayko04624,ko05205,map04624,map05205
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons1
Model size405
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927396.7760046-UTR-C-linearis_contig105:471884..4719081622927396.7760046-UTR-C-linearis_contig105:471884..471908Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 471885..471908 +
1690879676.1848638-UTR-C-linearis_contig105:471884..4719081690879676.1848638-UTR-C-linearis_contig105:471884..471908Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 471885..471908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927396.853951-CDS-C-linearis_contig105:471908..4722891622927396.853951-CDS-C-linearis_contig105:471908..472289Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 471909..472289 +
1690879676.1957922-CDS-C-linearis_contig105:471908..4722891690879676.1957922-CDS-C-linearis_contig105:471908..472289Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 471909..472289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.958.1prot_C-linearis_contig105.958.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig105 471909..472289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig105.958.1

>prot_C-linearis_contig105.958.1 ID=prot_C-linearis_contig105.958.1|Name=mRNA_C-linearis_contig105.958.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=127bp
MAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKGVVMAK
ALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPG
ATPLYGAVRHDNEEAVVRLLAAGAVQP
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mRNA from alignment at C-linearis_contig105:471885..472289+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig105.958.1 ID=mRNA_C-linearis_contig105.958.1|Name=mRNA_C-linearis_contig105.958.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at C-linearis_contig105:471885..472289+ (Chordaria linearis ClinC8C monoicous)
AAGAAGGGGACGAGCGCCTTGACGATGGCGATCCGCAACTGCCACGTCGA CGTGTTCGAGTTGCTCGTCGAAGCGGGCGCCGATCTGAACGCCGCCGACG TCACAGGCTTCACCCCGTTTATGTCGGCAAGCCTGGGCATAGAGGAAGCC GAAAAGGGCGTCGTGATGGCGAAGGCGCTGCTGCGGGCCGGGGCCGACCC AACGATAACCAACGACGAGGGCTGCATCGCCCTGACCTACGCGGCCTCCG AGGGCTCCGCGGAGGTGGTGGGCATGCTCCTGGAGAAGGCTCCCAAAACG GTGTCTCACATGACCTTGCCCGGCGCGACGCCCCTGTACGGAGCGGTCCG CCACGACAACGAGGAGGCCGTGGTCCGCCTGTTGGCGGCGGGGGCGGTGC AACCG
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Coding sequence (CDS) from alignment at C-linearis_contig105:471885..472289+

>mRNA_C-linearis_contig105.958.1 ID=mRNA_C-linearis_contig105.958.1|Name=mRNA_C-linearis_contig105.958.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at C-linearis_contig105:471885..472289+ (Chordaria linearis ClinC8C monoicous)
ATGGCGATCCGCAACTGCCACGTCGACGTGTTCGAGTTGCTCGTCGAAGC
GGGCGCCGATCTGAACGCCGCCGACGTCACAGGCTTCACCCCGTTTATGT
CGGCAAGCCTGGGCATAGAGGAAGCCGAAAAGGGCGTCGTGATGGCGAAG
GCGCTGCTGCGGGCCGGGGCCGACCCAACGATAACCAACGACGAGGGCTG
CATCGCCCTGACCTACGCGGCCTCCGAGGGCTCCGCGGAGGTGGTGGGCA
TGCTCCTGGAGAAGGCTCCCAAAACGGTGTCTCACATGACCTTGCCCGGC
GCGACGCCCCTGTACGGAGCGGTCCGCCACGACAACGAGGAGGCCGTGGT
CCGCCTGTTGGCGGCGGGGGCGGTGCAACCGATGGCGATCCGCAACTGCC
ACGTCGACGTGTTCGAGTTGCTCGTCGAAGCGGGCGCCGATCTGAACGCC
GCCGACGTCACAGGCTTCACCCCGTTTATGTCGGCAAGCCTGGGCATAGA
GGAAGCCGAAAAGGGCGTCGTGATGGCGAAGGCGCTGCTGCGGGCCGGGG
CCGACCCAACGATAACCAACGACGAGGGCTGCATCGCCCTGACCTACGCG
GCCTCCGAGGGCTCCGCGGAGGTGGTGGGCATGCTCCTGGAGAAGGCTCC
CAAAACGGTGTCTCACATGACCTTGCCCGGCGCGACGCCCCTGTACGGAG
CGGTCCGCCACGACAACGAGGAGGCCGTGGTCCGCCTGTTGGCGGCGGGG
GCGGTGCAACCG
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