mRNA_C-linearis_contig105.958.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: A0A6H5JSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC7_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 8.140e-16 Identity = 53/137 (38.69%), Postives = 77/137 (56.20%), Query Frame = 1 Query: 4 KGTSALTMAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKG---VVMAKALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAVRHDNEEAVVRLLAAGAVQP 405 KG AL +AI + HVDVF LL++AGAD ++A+ G TP M + +E++ +G VMA+ AL +AA+ +++ +LL+KAP T++ T G TPLY A +AV LL+AGA QP Sbjct: 196 KGVRALHVAINHYHVDVFRLLLKAGADPDSANGKGLTPLMLTCI-LEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTDLIDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQP 331
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: D8LSK8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK8_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 1.320e-14 Identity = 52/137 (37.96%), Postives = 76/137 (55.47%), Query Frame = 1 Query: 4 KGTSALTMAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKG---VVMAKALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAVRHDNEEAVVRLLAAGAVQP 405 KG AL +AI + +VDVF LL++AGAD ++A+ G TP M + +E++ +G VMA+ AL +AA+ ++ +LL+KAP T++ T G TPLY A +AV LL+AGA QP Sbjct: 188 KGVRALHVAINHYNVDVFRLLLKAGADPDSANGKGLTPLMLTCI-LEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTNLIDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQP 323
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: A0A433RX48_9BACL (Ankyrin n=1 Tax=Kurthia sp. 3B1D TaxID=1562256 RepID=A0A433RX48_9BACL) HSP 1 Score: 62.8 bits (151), Expect = 2.950e-9 Identity = 43/132 (32.58%), Postives = 65/132 (49.24%), Query Frame = 1 Query: 1 KKGTSALTMAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKGVVMAKALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAV----RHDNEEAVVRLL 384 ++G SAL MA N H+++ +LL+EAGAD+N D TP++ A A +G L+ +P ITN G L A GS + V +L+ V H+ G T L A+ N + +++LL Sbjct: 58 RRGRSALMMATYNHHIELVQLLIEAGADVNQQDDLKNTPYLYA------AAEGYTELLELMNGKVNPYITNRYGASGLISACERGSVDAVEWILKHTASDVDHINNLGWTALLEAIILGDGSGNYQQIIKLL 183
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: J3A5E7_9BACL (Ankyrin repeat-containing protein n=30 Tax=Paenibacillaceae TaxID=186822 RepID=J3A5E7_9BACL) HSP 1 Score: 62.4 bits (150), Expect = 5.840e-9 Identity = 42/115 (36.52%), Postives = 59/115 (51.30%), Query Frame = 1 Query: 4 KGTSALTMAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKGVVMAKALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAV 348 +G ++ +A+ + +D+F LLVE GA++N D P + AS A + KA + AGAD TITN G AL AA G E+V LL + + H+ G T L AV Sbjct: 94 RGRTSAMIAVHSAQLDIFNLLVERGANINIRDNNLDNPLLFAS-----AAGQLAFVKASIAAGADTTITNRFGGTALIPAADRGHVEIVKELLTSSDVNIDHVNRLGWTALLEAV 203
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: A0A3S9V6Y4_9BACL (Ankyrin repeat domain-containing protein n=1 Tax=Paenibacillus lutimineralis TaxID=2707005 RepID=A0A3S9V6Y4_9BACL) HSP 1 Score: 60.5 bits (145), Expect = 2.020e-8 Identity = 47/135 (34.81%), Postives = 69/135 (51.11%), Query Frame = 1 Query: 7 GTSALTMAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKGVVMAKALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAV-----RHDNEEAVVRLLAAGA 396 G ++ +A+ +++FELLVE GA++N D P + + AE + KA + AGAD TITN G AL AA G E+V LL + V+H+ G T L A+ D+++ V L+A GA Sbjct: 56 GRTSAMIAVHTDQLEMFELLVEHGANINIRDDRLDNPLLYSG-----AEGKMDFLKAAIAAGADTTITNRFGGTALIPAADRGHVEIVRELLANSDVDVNHINNLGWTALLEAIILGDGGKDHQQIVDLLIAGGA 185
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: UPI000497BAC9 (ankyrin repeat domain-containing protein n=1 Tax=Kurthia huakuii TaxID=1421019 RepID=UPI000497BAC9) HSP 1 Score: 60.1 bits (144), Expect = 2.940e-8 Identity = 45/137 (32.85%), Postives = 67/137 (48.91%), Query Frame = 1 Query: 1 KKGTSALTMAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKGVVMAKALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAV-----RHDNEEAVVRLLAAGA 396 ++G SAL MA N HV++ E+L+EAGA++N D TP++ A A +G V L+ +P ITN G L A G+ E V +L + H+ G T L A+ + ++ + LL AGA Sbjct: 58 RRGRSALMMATYNHHVELAEILIEAGANVNQQDDLKNTPYLYA------AAEGYVDILELMNGKINPHITNRYGGNGLIPACERGAVETVAWILTHTASDIDHINNLGWTALLEAIILGDGSKNYQQIIKLLLEAGA 188
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: UPI001EF60010 (MFS transporter n=1 Tax=Lysinibacillus fusiformis TaxID=28031 RepID=UPI001EF60010) HSP 1 Score: 60.1 bits (144), Expect = 3.550e-8 Identity = 43/111 (38.74%), Postives = 58/111 (52.25%), Query Frame = 1 Query: 16 ALTMAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKGVVMAKALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAV 348 AL+ + DV ++L+E GAD+N D PF+ A AE + + + + AGADPTI N G IAL AA G E V +LE+ V+HM PG T L A+ Sbjct: 81 ALSNLVGALFPDVVKVLIEHGADINRRDHMENNPFLYAG-----AEGYLKILRLTIEAGADPTIFNRFGGIALIPAAEHGYVENVQEILEQTNVDVNHMNKPGWTALLEAI 186
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: UPI0016438F5D (ankyrin repeat domain-containing protein n=1 Tax=Brevibacillus brevis TaxID=1393 RepID=UPI0016438F5D) HSP 1 Score: 58.2 bits (139), Expect = 1.160e-7 Identity = 41/115 (35.65%), Postives = 57/115 (49.57%), Query Frame = 1 Query: 4 KGTSALTMAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKGVVMAKALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAV 348 +G ++ +A+ +D+F LLV GA++N D P + AS A + KA + AGAD TITN G AL AA G E+V LL + + H+ G T L AV Sbjct: 36 RGRTSAMIAVHTAKLDIFNLLVGHGANINIRDNNLDNPLLFAS-----AAGQLAFVKASIAAGADTTITNRFGGTALIPAADRGHVEIVKELLTTSDVNIDHVNRLGWTALLEAV 145
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: UPI0015BE6531 (ankyrin repeat domain-containing protein n=2 Tax=unclassified Paenibacillus TaxID=185978 RepID=UPI0015BE6531) HSP 1 Score: 58.2 bits (139), Expect = 1.690e-7 Identity = 45/135 (33.33%), Postives = 69/135 (51.11%), Query Frame = 1 Query: 1 KKGTSALTMAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKGVVMAKALLRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAVRHDN----EEAVVRLLAAG 393 ++G +A +A+ +++FELL++ GA+LN D P + + AE + KA + AGAD T+TN G AL AA G E+V LL + V+H+ G T L A+ + + +V LL AG Sbjct: 70 REGRTAAMIAVHTDQLEMFELLIKQGANLNIRDNRLDNPLLYSG-----AEGKMDFLKAAIAAGADTTMTNRFGGTALIPAADRGHVEIVRELLANSDVDVNHVNNLGWTALLEAILLGDGGKGHQQIVDLLIAG 199
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Match: D8LMB0_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB0_ECTSI) HSP 1 Score: 56.6 bits (135), Expect = 1.870e-7 Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1 Query: 181 LRAGADPTITNDEGCIALTYAASEGSAEVVGMLLEKAPKTVSHMTLPGATPLYGAVRHDNEEAVVRLLAAGA 396 L AGADP + +++G +A+ +AA+ +VV +LL KAP T++H T G TPL A E + LL+AGA Sbjct: 24 LLAGADPALEDEDGGLAIHFAAARCDTQVVQLLLSKAPSTLNHATHFGWTPLAAAADGGRESTMCLLLSAGA 95 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.958.1 >prot_C-linearis_contig105.958.1 ID=prot_C-linearis_contig105.958.1|Name=mRNA_C-linearis_contig105.958.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=127bp MAIRNCHVDVFELLVEAGADLNAADVTGFTPFMSASLGIEEAEKGVVMAKback to top mRNA from alignment at C-linearis_contig105:471885..472289+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.958.1 ID=mRNA_C-linearis_contig105.958.1|Name=mRNA_C-linearis_contig105.958.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at C-linearis_contig105:471885..472289+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:471885..472289+ >mRNA_C-linearis_contig105.958.1 ID=mRNA_C-linearis_contig105.958.1|Name=mRNA_C-linearis_contig105.958.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at C-linearis_contig105:471885..472289+ (Chordaria linearis ClinC8C monoicous)back to top |