mRNA_C-linearis_contig105.943.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig105.943.1
Unique NamemRNA_C-linearis_contig105.943.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig105.943.1 vs. uniprot
Match: D7G0U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U1_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 1.090e-70
Identity = 100/118 (84.75%), Postives = 108/118 (91.53%), Query Frame = 1 
Query:   43 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVRKEELTFGHRQCVKPDQPITIYKLRDHETNEEFLEFDEAIIFQTACSGCLNIKSCINSGHKLVDWRPTFAGGRVAGTPAP 396
            MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVR++ELT+ HRQCVKPDQ ITIYKL DHETNE++LEFDE IIFQTAC  CLNIKSC+  GHKL+DWRPTFAGGRVAG+  P
Sbjct:    1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEKIIFQTACRMCLNIKSCLREGHKLIDWRPTFAGGRVAGSSHP 118
[Close]
BLAST of mRNA_C-linearis_contig105.943.1 vs. uniprot
Match: A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 1.250e-51
Identity = 89/115 (77.39%), Postives = 95/115 (82.61%), Query Frame = 1 
Query:   43 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVRKEELTFGHRQCVKPDQPITIYKLRDHETNEEFLEFDEAIIFQTACSGCLNIKSCINSGHKLVDWRPTFA-GGRVAG 384
            MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVR++ELT  HRQCVKPDQ ITIYKL DHETNE++LEFDE IIFQTAC  CLNIKSC+  G        TF  GG+ AG
Sbjct:    1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTNSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEIIFQTACRMCLNIKSCLRLGKVF---SATFGKGGKSAG 112
[Close]
BLAST of mRNA_C-linearis_contig105.943.1 vs. uniprot
Match: D7G0T9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T9_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 2.430e-28
Identity = 52/113 (46.02%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:   43 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVRKEELTFGHRQCVKPDQPITIYKLRDHETNEEFLEFDEAIIFQTACSGCLNIKSCINSGHKLVDWRPTFAGGRVA 381
            MD DG  L++  CN C  NK   + C+ R+HN R++ V+++EL   HRQCVKPDQ +TI+KL D  T EE +E+   +IFQ  C+ C+++K+CI  GH+L DW P    GR +
Sbjct:    1 MDVDGTCLVVSPCNNCRINKNGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTPEGGRGRAS 113
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0U1_ECTSI1.090e-7084.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LER2_9PHAE1.250e-5177.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0T9_ECTSI2.430e-2846.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:157962..162611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size521
Cds size519
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.943.1prot_C-linearis_contig105.943.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig105 157963..162611 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927393.9191654-CDS-C-linearis_contig105:157962..1581551622927393.9191654-CDS-C-linearis_contig105:157962..158155Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 157963..158155 -
1690879674.2019875-CDS-C-linearis_contig105:157962..1581551690879674.2019875-CDS-C-linearis_contig105:157962..158155Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 157963..158155 -
1622927393.9310358-CDS-C-linearis_contig105:158741..1588601622927393.9310358-CDS-C-linearis_contig105:158741..158860Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 158742..158860 -
1690879674.2117763-CDS-C-linearis_contig105:158741..1588601690879674.2117763-CDS-C-linearis_contig105:158741..158860Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 158742..158860 -
1622927393.943295-CDS-C-linearis_contig105:160397..1605021622927393.943295-CDS-C-linearis_contig105:160397..160502Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 160398..160502 -
1690879674.2231138-CDS-C-linearis_contig105:160397..1605021690879674.2231138-CDS-C-linearis_contig105:160397..160502Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 160398..160502 -
1622927393.960004-CDS-C-linearis_contig105:162509..1626111622927393.960004-CDS-C-linearis_contig105:162509..162611Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 162510..162611 -
1690879674.2383482-CDS-C-linearis_contig105:162509..1626111690879674.2383482-CDS-C-linearis_contig105:162509..162611Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 162510..162611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig105.943.1

>prot_C-linearis_contig105.943.1 ID=prot_C-linearis_contig105.943.1|Name=mRNA_C-linearis_contig105.943.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=173bp
PNTQQRWRPFLASKMDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMS
TVRKEELTFGHRQCVKPDQPITIYKLRDHETNEEFLEFDEAIIFQTACSG
CLNIKSCINSGHKLVDWRPTFAGGRVAGTPAPPAVHQKSTPGSGGGGGGG
GGGGGSKKSRGGGTLTRPKGSKG
back to top

mRNA from alignment at C-linearis_contig105:157962..162611-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig105.943.1 ID=mRNA_C-linearis_contig105.943.1|Name=mRNA_C-linearis_contig105.943.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4650bp|location=Sequence derived from alignment at C-linearis_contig105:157962..162611- (Chordaria linearis ClinC8C monoicous)
CCAAATACACAGCAGCGTTGGCGGCCTTTCCTAGCCAGCAAGATGGACCA
GGATGGCTTGTTCCTCATGCTCAAGATGTGTAACGGCTGCAGCCACAACA
AGGTGAGAGAGTGAGCCGCCGGTTTCTGAATGGTCGCTGTCGACGAAAGA
CGAGACAGCATCAGGCAGACAAGACCGGCTGCCTGACCTGTGTCCGCGGC
GGTGTTTTTGCCCGCACACGAAAAAAAGGCGTACGTTGTAGCCCGCCCCT
GCTGTCGATGCGCTCAAGAGGTAGCAGCAGCAAGCGTCCGTCGTCTGTCC
TGCTGTAGTTCTTCCAGGGGTCGACGTCGGACATGCTTTGTGTCGAGCTT
CTCGGCGTGACAGGTCAAGCGACCAGACGTCCAAACTATTTCGGCACGAG
AGCATGAGTTCGGGCAGCAGCAGCAGCAGGAGGTCGACGGCGACGAGATA
AAGACCGCTCATGCCCACACCCGACGCACTCGGCACGGCGCCTGCGAATC
GTTTTTTCTCCGCGGCACACGGAATGCTCTACAAGACGCTACGGACCGAC
TCTGGTAGCAGTTCTGCGTTAGTGAGAAACAAAACTCTAATCTAAACATT
ATTAACATTACGTTCTGGACGGTGTTCGCCGCAACAGCAGGCAAAGGCTC
TTGTTTTTCAGCCCAGCCTGCCCGATAAAAAAAGGCGTGTGTTGATCGTC
CACAGCCGCGCGCTTCCCACCTAGGTTCGCCGCGCTCACGAGGAAAGCAA
CCGAACCTCCCACACATTGTTAACAGACAGACAGACATCGCGACAAAACC
TACTTTCGAGTTCCCTCGAGTTTTGTGTCGGAGGGCTTAGGGAGGGGGTG
GGGCGATAGACAGCATGTCCCTGAACATCGAACGAACTCTCACGAGAGGT
TTTGAAATAAGAAATAATCGCGACGGCAGGGGTAAAAAAAAACACCGGTC
AGCTATCTATCTGTCTCCTACGAGGCCGCAGGGTCATGCATGTGGTAGAT
AGGGAAGGTTCGTCGCCCAGGCATGTGCCGTGGGCTTCACCCGCTAGGCT
TCGCTGCTCGACGCGCGTTGGGCAGCTGGCTTAGCTCGGCGGCCACTTTT
CAAAAACGCGCGAGTTGGCGAGAGGGACATCTGTTATCTGTTGCTTTTCA
AAGTCGGTGCCCGTCCTTTCTTTCCCGCGGGCAAGAAATAAAAAATCCAA
GAATCGTCCACAAAACCCGAATTGCAGCGCTGGCTCCAATCAAAAGCTAA
AGTTTGATCATAAAATTATTGGGGTCCTTTGACAGCCTCTCTCGGAAACA
CGCTGCCGTTGTCGGAGGGGTGCGATGCCGTCATTATCTGGTTCTAGTCC
TACATACCTATGTCTAGAAGCACAGACTCGCCTGTACAGAAAACAAAAAA
TTACATGTCGAGCTCCCACGCCGCCGTTTCTAGATGCACCCCAAAAACGA
AAAAAAACGATGGCTTTATGGTGGGTTTCTCCCCGATATATTTGCTGTTG
ACCCGGCAGAGCGTTGCAGGGGAGGTTTATGGCGTTTTCCCAGTTTTAGG
TGTTTTTCTTCTCCACCTATCCCATATTACGTCACTACTCTGTCTGTATT
GAACTGCTGTTGATCACCACTTAGAGATTTGTCTCTTTGATGCCGTTGTG
GTTTATAAAAAACGATGAAATGTCATGGTCGGACAGCACACAAGGCGTTA
TTCGTAACATCGGTTTTGGGGGCAAAACCTTGGGGGCAAAATTAAAATTT
ATTTCCCACCCTCGGTATACTTATACTTTGACGGGTATTTGAAGTATATC
TAAATTGTGATGCGCATACGAACAAATCGTGTTGTCGATTCACGCACAAC
GCCCCCCCCCCACCCGCGCGCGCCCCCCCCTTGTTGCACACTTGGTACGG
CGGTACAACTGATTCCACCATGTTGCAGATCGAGCAGCCAAGCCCCACCA
CGTGCTACTACACGAATAGTATAGACCTGGAACTCGCGCGACTTATTACA
ATGTTGCGATCCTGTTTTTGTTTGTTGCCGGTTGTCTCGTGCTTGTCATC
TTGTCGGCTGGAATGAAACGGCGACTGACTGCGGCGGTGTGGGGTAAAAT
CTCCTGCAGGGAAGCTGGAAAAAATGCATGTCGCGGAGGCACAACCCGAG
GATGTCGACCGTGCGCAAGGAAGAGCTGACTTTCGGCCACCGGCAGTGCG
TCAAGCCAGACCAGGTGAGGAGGAAAATACAAAGGAGAAGAGAAGCATGA
CGTTCGTCTTCTTCTTGTTCTAAATATGTGTGGGTGTTGTCTACATTTGC
TCACCCAAAGACGGTCGTTACTCGGTACGATACGGCGCTCGACCAATGTC
TCCTCGCCGTCCATGTGTTTTTAGCAATGGCCAAAATCGGGTCCACCCGG
ACGGAACCTGGCCAAAATCTATTCAAAGGGCGCCGTCTGATTGGCCAACG
TCCGCCTGGCCCCGACTTTGGCCGCATTTCTGCCGGGTGCACCCGATTCT
GGCTACTACCTGATGAAAACCAGGGTACCCGGTTGTGGCCGGGCTATTCG
ACCAGCAGCCCACACCCGCCAGCGCCCACGCGGCCGCGCTGCGGTGTCCC
TGAGGCAGAAATTTTCGTCCCCGACCTCTCGCGGGGCGTTTTATCGGAAC
TCTTTCAGAACTTTTTTCGATGCCACGGTTACGCATCATGTCATTGCTGG
GTGTGTGGCTCTACCCCTGAATGGATCACAGCAACTCCCCGACACACAAC
ACTCCTTGCGACACTGTGAACACGACACAGAGAAGCGTGAAGGGTTCAAA
CGCCCTCCAGATACACGAGGTGCTTGAAGTGATGTGAAGCAGTCGCGTCA
CGTCATGCGCAGTGCACTGCTGATATGTGTTATGTATGTGCGGCCGAAAA
CTAGCCTTCACACAAAGGGCGCTCCGGTGCTGCCACCGTACATATCGCAC
CCGAACAATTTGACTTCCATGTTCTCTTGTGTACAAATCCCCAGTCAAAT
ACCTACCGTAGAGGGGCAGCGGCAGGGAAATCTGGGTCGGGATTTCCCCG
AAAAGACGGCCTTTGCGTGTTACAGCAGTACACAACTTCCACACATGGAC
GGGTATGTAGTCTACTGCTGTACACAGCTACACATGTTATCTGTTGGTCA
GACTCTAATCGAAAACAAAAGAGTTCCGAAAAAACGTCCCGCGTGAGGGG
CGTCGGGGACGAAAAGTTCTGCCGCAGGGACACCACGCAGCGCGCTGGGG
GCTGTGACGCTGCGGTGACGCGGCCGCATGGGCGCTGGCGGGTGTGGGCT
GCTGGTCGAATAGCCCGGCCACAACCGGGTACCCTGGTGTTCATCGGGTG
TTAGCCAGAATCGGGTGCACCCGGCAGAAATGCGGCCGAAGTCGGGGCCA
GGCGGGCGTTGGCCAATCAGACTGCGCCCTTTGATTAGATGAATATAGGG
TACCCGCTTTTGGCCAGGTTCCGTCCGGGTGGACCCGATTTTGGCCATTG
CTCTTGTTTTTTTGTTTTTTCCCCATGCACCATTATTTTCCCCTCGGGGC
GACACCCCCTCCCCCCGAGCGTTGTCCGTGCCCCCAGCACTAAATGCTGC
ATGTCGGTCATGTACACATTCGATCTGTGTCTGAAGGTGTGGCGGGGCCT
TGCGGATCGTGTCGAACATCGCTGTTAACACCACGTTATGTCCCTCCCCC
TTGTCGTCCTCCTCCCCCCCCCCCCCCCCCCCCCTGCCGGGCCGGGAAAA
GCCCATCACCATCTACAAACTCCGCGACCACGAGACGAACGAGGAGTTCC
TGGAGTTCGACGAGGCCATCATCTTCCAGACGGCATGTTCGGGCTGCCTC
AACATCAAGTCCTGCATCAAGTGAGCAAAATACAAAATACGTGAGCGCTT
TTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTGTCTGCGTTGTGTA
GCGAATACGCGAATACAACCAAGCGTCGGCGCGAAAAATGAAGATGGCGT
GTGTTGCGTGTGTTGCAGCTTCTCGTGCCGAGCGGCTGGTGATACTGGTC
GCTAACATGACGTCAGCAGCAGCAGCGGCAGCGGCAGCAGCTTCGGCAGC
AGCAACAAATTGCTAGTCGGCCAAACATACACAGCAGTTGCCCGTTCGGT
GTTGAAAAATTAAAATTTTCAAACTTCATCGCCGACAAACCCATGTCGCT
GCAAAACAACAGCCCCCCCCCCCCGTTTCCGCTCCGTTGCTCCTCATCCG
CATATTCCCGGTCCGGCGCTTCACCTTACGCTGTCCCGATCAAGCCTAAA
TCATGACCTTATGACCTTACCTTACCTCCTTCGGCTGATGACCTTGTCTT
GTCTGCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CACTCCTACTTGTCGCCGGCCCACTCCCACCACTACCTGCCCTGTGGCAT
GCTCAGCTCCGGTCACAAGTTGGTCGACTGGAGACCAACCTTCGCGGGCG
GGAGAGTGGCAGGCACGCCCGCCCCGCCGGCCGTCCACCAAAAGTCGACG
CCGGGCAGCGGGGGCGGCGGCGGTGGCGGTGGCGGTGGCGGCGGGAGCAA
GAAAAGCAGGGGCGGGGGCACTCTGACCAGACCGAAGGGCAGCAAGGGGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig105:157962..162611-

>mRNA_C-linearis_contig105.943.1 ID=mRNA_C-linearis_contig105.943.1|Name=mRNA_C-linearis_contig105.943.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at C-linearis_contig105:157962..162611- (Chordaria linearis ClinC8C monoicous)
CCAAATACACAGCAGCGTTGGCGGCCTTTCCTAGCCAGCAAGATGGACCA
GGATGGCTTGTTCCTCATGCTCAAGATGTGTAACGGCTGCAGCCACAACA
AGCCAAATACACAGCAGCGTTGGCGGCCTTTCCTAGCCAGCAAGATGGAC
CAGGATGGCTTGTTCCTCATGCTCAAGATGTGTAACGGCTGCAGCCACAA
CAAGGGAAGCTGGAAAAAATGCATGTCGCGGAGGCACAACCCGAGGATGT
CGACCGTGCGCAAGGAAGAGCTGACTTTCGGCCACCGGCAGTGCGTCAAG
CCAGACCAGGGAAGCTGGAAAAAATGCATGTCGCGGAGGCACAACCCGAG
GATGTCGACCGTGCGCAAGGAAGAGCTGACTTTCGGCCACCGGCAGTGCG
TCAAGCCAGACCAGCCCATCACCATCTACAAACTCCGCGACCACGAGACG
AACGAGGAGTTCCTGGAGTTCGACGAGGCCATCATCTTCCAGACGGCATG
TTCGGGCTGCCTCAACATCAAGTCCTGCATCAACCCATCACCATCTACAA
ACTCCGCGACCACGAGACGAACGAGGAGTTCCTGGAGTTCGACGAGGCCA
TCATCTTCCAGACGGCATGTTCGGGCTGCCTCAACATCAAGTCCTGCATC
AACTCCGGTCACAAGTTGGTCGACTGGAGACCAACCTTCGCGGGCGGGAG
AGTGGCAGGCACGCCCGCCCCGCCGGCCGTCCACCAAAAGTCGACGCCGG
GCAGCGGGGGCGGCGGCGGTGGCGGTGGCGGTGGCGGCGGGAGCAAGAAA
AGCAGGGGCGGGGGCACTCTGACCAGACCGAAGGGCAGCAAGGGGCTCCG
GTCACAAGTTGGTCGACTGGAGACCAACCTTCGCGGGCGGGAGAGTGGCA
GGCACGCCCGCCCCGCCGGCCGTCCACCAAAAGTCGACGCCGGGCAGCGG
GGGCGGCGGCGGTGGCGGTGGCGGTGGCGGCGGGAGCAAGAAAAGCAGGG
GCGGGGGCACTCTGACCAGACCGAAGGGCAGCAAGGGG
back to top