mRNA_C-linearis_contig105.939.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig105.939.1 vs. uniprot
Match: D7FXU5_ECTSI (DnaJ_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU5_ECTSI) HSP 1 Score: 418 bits (1074), Expect = 1.190e-142 Identity = 215/283 (75.97%), Postives = 244/283 (86.22%), Query Frame = 1 Query: 1 FLSQAYDTLRDPRSRGDYNDSLRNPVKQATSGGAGMGGRYRPTGAGGAGARNNAGPFDGVRINLFDIFRFSPGNRENLGVPKARWRNILVKLDVSLEELLSGVVKEVDVGDSVVERYKQAARTGLLSEVLQEGAAVFGALLVKCPLPISAVAFAAYVHLKLPKIPKGMFRVPILPGYRRGTKLTFTTSDGVDVTFELVEKRDQFRRSGDDLFIMMRLSPKMARRRCIVKVPTLDKGKVSVLLRRREARDGYERRLPGLGMPRR-NAGEEGS--RGDLIVHFMV 840
L QAYDTLRDPRSRGDY+DSLRNP YRP GA GPF+GVR+NLFDIFRFSPGNRENLGVPKARWR I+VK++VSLEELLSG+VKE+ +GDS++ERYKQAARTGLLSEVLQEGAAVFGALL+KCPLPISAVAFAAYVHLKLP++P+G F+VPILPGYRRGTK+TF+T +GVDVTFELVEK+ QFRRSGDDLF+M+RLSPKM +R C+VKVPTLDKG +S+ L+RREARDGYERRLPGLGMPRR + GE+GS RGDLIVHFMV
Sbjct: 1 MLPQAYDTLRDPRSRGDYDDSLRNPAAXXXXXXXXXX-AYRP----GAXXXXXXGPFEGVRVNLFDIFRFSPGNRENLGVPKARWRQIVVKVEVSLEELLSGIVKEISIGDSIIERYKQAARTGLLSEVLQEGAAVFGALLIKCPLPISAVAFAAYVHLKLPRVPQGAFKVPILPGYRRGTKITFSTPEGVDVTFELVEKQSQFRRSGDDLFVMLRLSPKMVKRGCVVKVPTLDKGTISMRLKRREARDGYERRLPGLGMPRRKDGGEDGSSNRGDLIVHFMV 278
BLAST of mRNA_C-linearis_contig105.939.1 vs. uniprot
Match: A0A6H5L854_9PHAE (DnaJ_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L854_9PHAE) HSP 1 Score: 335 bits (860), Expect = 8.570e-111 Identity = 167/209 (79.90%), Postives = 191/209 (91.39%), Query Frame = 1 Query: 85 ATSGGAGM-GGRYRPTGAGGAGARNNAGPFDGVRINLFDIFRFSPGNRENLGVPKARWRNILVKLDVSLEELLSGVVKEVDVGDSVVERYKQAARTGLLSEVLQEGAAVFGALLVKCPLPISAVAFAAYVHLKLPKIPKGMFRVPILPGYRRGTKLTFTTSDGVDVTFELVEKRDQFRRSGDDLFIMMRLSPKMARRRCIVKVPTLDKG 708
A +GGAG+ GG YRP GAGA GPF+GVR+NLFDIFRFSPGNRENLGVPKARWR I+VK++VSLEELLSG+VKE+ +GDS++ERYKQAARTGLLSEVLQEGAAVFGALL+KCPLP+SAVAFAAYVHLKLP++P+G FRVPILPGYRRGTK+TF+T DGVDVTFELVEK+ QFRRSGDDLF+M+RLSPKM +R C+VKVPTLDKG
Sbjct: 6 AAAGGAGVAGGAYRP----GAGAAAGGGPFEGVRVNLFDIFRFSPGNRENLGVPKARWRQIVVKVEVSLEELLSGIVKEISIGDSIIERYKQAARTGLLSEVLQEGAAVFGALLIKCPLPVSAVAFAAYVHLKLPRVPQGAFRVPILPGYRRGTKITFSTPDGVDVTFELVEKQSQFRRSGDDLFVMLRLSPKMVKRGCVVKVPTLDKG 210
BLAST of mRNA_C-linearis_contig105.939.1 vs. uniprot
Match: A0A836CM70_9STRA (DnaJ_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM70_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.790e-25 Identity = 73/189 (38.62%), Postives = 107/189 (56.61%), Query Frame = 1 Query: 274 LDVSLEELLSGVVKEVDVGDSVVERYKQAARTGLLSEVLQEGAAVFGALLVKCPLPISAVAFAAYVHLKLPKIPKGMFRVPILPGYRRGTKLTFTTSDGVDVTFELVEKRDQ-FRRSGDDLFIMMRLSPKMARRRCIVKVPTLDKGKVSVLLRRREARDGYERRLPGLGMPRRNAGEEGSRGDLIVHFM 837
L+ +LEEL +G V+EV ERY QA +TGL +V + V LV+ P+ +SA+ F H +P++P +FRV I PG G ++ ++ E+VE + F R G+D+ I RL+ + + VPTL++G V LR+ EARDGY + +PGLGMP R +GSRG L+V F+
Sbjct: 3 LECTLEELFAGAVREVQFKRGTWERYVQAGKTGLWMDVAAQALLVALPTLVRLPVALSAIFFGGVFHKMMPELPSEVFRVTIPPGCGDGAQIRL--GQDPEIFIEVVELPHKLFERRGNDVLIRRRLTARKMAQGGDFSVPTLERGTAIVHLRKGEARDGYIKAVPGLGMPTR----DGSRGRLLVMFI 185
BLAST of mRNA_C-linearis_contig105.939.1 vs. uniprot
Match: A0A484MIQ7_9ASTE (DnaJ_C domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484MIQ7_9ASTE) HSP 1 Score: 64.7 bits (156), Expect = 5.150e-8 Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = 1 Query: 511 VPILPGYRRGTKLTFTTSDGV-------DVTFELVEKRDQ-FRRSGDDLFIMMRLSPKMARRRCIVKVPTLD-KGKVSVLLRRREARDGYERRLPGLGMPRRNAGEEG-SRGDLIVHFMV 840
+ + PG+RRGTK+TF D+ F + EK+ F+R GDDL I +++S A C ++VPTL + K+ V L G+E+ +PG GMP+ G+ G RGDL + F++
Sbjct: 126 IKVKPGWRRGTKITFERKGDERMGTHPEDIIFVIEEKKHPVFKREGDDLEIGVQISLAQALTGCTIEVPTLGGEEKMVVNLDNEIIYPGFEKTIPGQGMPKYKEGQAGRQRGDLRLKFLI 245
BLAST of mRNA_C-linearis_contig105.939.1 vs. uniprot
Match: A0A484MLH1_9ASTE (DnaJ_C domain-containing protein n=2 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484MLH1_9ASTE) HSP 1 Score: 64.7 bits (156), Expect = 1.010e-7 Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = 1 Query: 511 VPILPGYRRGTKLTFTTSDGV-------DVTFELVEKRDQ-FRRSGDDLFIMMRLSPKMARRRCIVKVPTLD-KGKVSVLLRRREARDGYERRLPGLGMPRRNAGEEG-SRGDLIVHFMV 840
+ + PG+RRGTK+TF D+ F + EK+ F+R GDDL I +++S A C ++VPTL + K+ V L G+E+ +PG GMP+ G+ G RGDL + F++
Sbjct: 211 IKVKPGWRRGTKITFERKGDERMGTHPEDIIFVIEEKKHPVFKREGDDLEIGVQISLAQALMGCTIEVPTLGGEEKMVVNLDNEIIYPGFEKTIPGQGMPKYKEGQAGRQRGDLRLKFLI 330
BLAST of mRNA_C-linearis_contig105.939.1 vs. uniprot
Match: S8E0N3_9LAMI (J domain-containing protein n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8E0N3_9LAMI) HSP 1 Score: 59.7 bits (143), Expect = 2.180e-6 Identity = 41/119 (34.45%), Postives = 65/119 (54.62%), Query Frame = 1 Query: 511 VPILPGYRRGTKLTFTTSDG-------VDVTFELVEKRDQ-FRRSGDDLFIMMRLSPKMARRRCIVKVPTLDKGKVSVLLRRREARDGYERRLPGLGMPRRNAGEEGSRGDLIVHFMVE 843
+ + PG++RGTK+TF D+ F + EK+ F+R GDDL + + + A C V VP L G++++ + GYE+ +PG GMP+ +EG RGDL + F+V+
Sbjct: 122 IKVKPGWKRGTKITFEGKGDERPGALPADIIFSIEEKQHPLFKREGDDLELGVEVPLVQALTGCTVPVPLLGGGEITLSIDD-IIYPGYEKTIPGEGMPKP---KEGRRGDLRLKFLVD 236
BLAST of mRNA_C-linearis_contig105.939.1 vs. uniprot
Match: A0A2G9HLL7_9LAMI (Molecular chaperone (DnaJ superfamily) n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HLL7_9LAMI) HSP 1 Score: 60.5 bits (145), Expect = 2.640e-6 Identity = 40/119 (33.61%), Postives = 64/119 (53.78%), Query Frame = 1 Query: 511 VPILPGYRRGTKLTFTTSDG-------VDVTFELVEKRD-QFRRSGDDLFIMMRLSPKMARRRCIVKVPTLDKGKVSVLLRRREARDGYERRLPGLGMPRRNAGEEGSRGDLIVHFMVE 843
+ + PG+++GTK+TF D+ F + EKR F+R GDDL + + + A C + VP L G++++ + GYE+ +PG GMP ++G RGDL + F+VE
Sbjct: 239 IKVKPGWKKGTKITFEGKGDERPGTLPADIIFSIDEKRHPMFKREGDDLALGVEVPLVQALTGCTIPVPLLGGGQITLSIDD-IIYPGYEKIIPGQGMP---TSKDGKRGDLKLKFLVE 353
BLAST of mRNA_C-linearis_contig105.939.1 vs. uniprot
Match: A0A4D9AEX9_SALSN (Molecular chaperone DnaJ n=3 Tax=Salvia TaxID=21880 RepID=A0A4D9AEX9_SALSN) HSP 1 Score: 59.7 bits (143), Expect = 4.680e-6 Identity = 40/119 (33.61%), Postives = 65/119 (54.62%), Query Frame = 1 Query: 511 VPILPGYRRGTKLTFTTSDG-------VDVTFELVEKRDQ-FRRSGDDLFIMMRLSPKMARRRCIVKVPTLDKGKVSVLLRRREARDGYERRLPGLGMPRRNAGEEGSRGDLIVHFMVE 843
+ + PG+++GTK+TF D+ F +VEK+ FRR GDDL + + + A C +P L G+++V + GYE+ +PG GMP ++G+RG+L + F+VE
Sbjct: 235 IQVQPGWKKGTKITFEGKGDEKPGTLPADLVFSVVEKKHPLFRRDGDDLELGLEVPLVQALSGCTTPIPLLGGGQMTVSIDD-IIYPGYEKNVPGQGMP---ISKQGNRGNLRLKFLVE 349
BLAST of mRNA_C-linearis_contig105.939.1 vs. uniprot
Match: A0A6I9U1N8_SESIN (dnaJ protein homolog 1-like n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9U1N8_SESIN) HSP 1 Score: 58.2 bits (139), Expect = 1.450e-5 Identity = 41/120 (34.17%), Postives = 64/120 (53.33%), Query Frame = 1 Query: 508 RVPILPGYRRGTKLTFTTSDG-------VDVTFELVEKRDQ-FRRSGDDLFIMMRLSPKMARRRCIVKVPTLDKGKVSVLLRRREARDGYERRLPGLGMPRRNAGEEGSRGDLIVHFMVE 843
++ + PG+++GTK+TF DV F + EK F+R GDDL + + + A C + VP L G++++ + GYE+ +PG GMP +EG RGDL + F+VE
Sbjct: 236 KIKVKPGWKKGTKITFEGKGDERPGTFPADVIFSIDEKSHPLFKREGDDLELGVEVPLVQALTGCSLPVPLLGGGQINLSIDD-IIYPGYEKIIPGQGMP---MSKEGKRGDLRLKFLVE 351
BLAST of mRNA_C-linearis_contig105.939.1 vs. uniprot
Match: A0A8C4C744_9TELE (DnaJ homolog subfamily B member 5-like n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4C744_9TELE) HSP 1 Score: 57.0 bits (136), Expect = 3.080e-5 Identity = 79/297 (26.60%), Postives = 120/297 (40.40%), Query Frame = 1 Query: 4 LSQAYDTLRDPRSRGDYNDSLRNPVKQATSGGAGMGGRYRPTGAGGAGARNNAGPFDGVRIN-------LFDIFRFSPGNRENLGVPKARWRNI---LVKLDVSLEELLSGVVKEVDVGDSVVERYKQAARTGLLSEVLQEGAAVFGALLVKCPLPISAVAFAAYVHLKLPK---IPKG-MFRVPILPGYRRGTKLTFTTSD--GVDVTFELVEKR-DQFRRSGDDLFIMMRLSPKMARRRCIVKVPTLDKGKVSVLLRRREARDGYERRLPGLGMPRRNAGEEGSRGDLIVHFMVE 843
+++AYD L DP R ++ VK+A++ G P + +G F V ++ LF+ F +P +R + R R + +L+VSLEELL+GV K H++LP+ +P+ + V + G+R GT +TF + D+TF L EK+ FRR G +L ++ + A C V VPTLD G + L + G R L G G+PR RGDL+V F V+
Sbjct: 94 IAEAYDVLTDPEKRSLHDQQ---DVKKASTASPSSKGETSPP-------FHASGMFFNVEVDSDADFCDLFNPFLRTPHSRPSGPHSNGRGRGAGAEVCELEVSLEELLTGVTK----------------------------------------------------HVRLPQTHALPQERVMSVEVKKGWREGTTITFPGAGLKAGDITFVLKEKKHSSFRREGSNLIYTAAITLREALCGCTVTVPTLDGG-LKPLPCSDVIKPGSVRCLRGEGLPRPK--NPAQRGDLLVEFQVQ 325 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.939.1 >prot_C-linearis_contig105.939.1 ID=prot_C-linearis_contig105.939.1|Name=mRNA_C-linearis_contig105.939.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=254bp MGGRYRPTGAGGAGARNNAGPFDGVRINLFDIFRFSPGNRENLGVPKARWback to top mRNA from alignment at C-linearis_contig105:128774..133000+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.939.1 ID=mRNA_C-linearis_contig105.939.1|Name=mRNA_C-linearis_contig105.939.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4227bp|location=Sequence derived from alignment at C-linearis_contig105:128774..133000+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:128774..133000+ >mRNA_C-linearis_contig105.939.1 ID=mRNA_C-linearis_contig105.939.1|Name=mRNA_C-linearis_contig105.939.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1524bp|location=Sequence derived from alignment at C-linearis_contig105:128774..133000+ (Chordaria linearis ClinC8C monoicous)back to top |