mRNA_C-linearis_contig105.938.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: A0A7S3Y7G2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7G2_HETAK)

HSP 1 Score: 88.6 bits (218), Expect = 4.650e-17
Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = 1

Query:  313 TYYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDYNDSLRNPRRPGNGPTSPYSG-SSPSRHPEDAGDFF 603
            ++Y+VLGVEP  S E +++AYR+ AVKWHPDKN  N E AEKKFKEIQ+AY T+ +P  R  Y+ S +    P +G    Y G ++     EDAG+FF
Sbjct:   49 SHYTVLGVEPKASQEEIKKAYRKLAVKWHPDKNVDNKEMAEKKFKEIQEAYSTVSNPEKRQQYDLSTKRGHAPESGRGPAYRGYNTYGSRGEDAGNFF 146

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BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: A0A5N4D089_CAMDR (DnaJ-like protein subfamily B member 8 n=1 Tax=Camelus dromedarius TaxID=9838 RepID=A0A5N4D089_CAMDR)

HSP 1 Score: 84.7 bits (208), Expect = 7.020e-17
Identity = 53/129 (41.09%), Postives = 79/129 (61.24%), Query Frame = 1

Query:  316 YYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDYNDSLRNPRRPGNGPTSPYSGSSPS----RHPED------------AGDFFSTAFYTRMREQATSGGA 654
            +Y VLG++ G S E++R+AYRR A++WHPDKN GN E+AE++FK++ +AY+ L D R R  Y+ + R+ RR G G +SP+ G   S    R+PED            + DF+     +    +AT+GGA
Sbjct:    4 HYEVLGLQAGASPEDIRKAYRRLALRWHPDKNPGNKEEAERRFKQVSEAYEVLSDCRRRSAYDRAGRDSRRAG-GASSPHGGPFGSGYTFRNPEDIFREFFGGLDPFSFDFWDGPLGSERGGRATAGGA 131

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BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: A0A8B8R9I9_CAMFR (dnaJ homolog subfamily B member 8 n=2 Tax=Camelus TaxID=9836 RepID=A0A8B8R9I9_CAMFR)

HSP 1 Score: 85.5 bits (210), Expect = 1.070e-16
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 1

Query:  316 YYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDYNDSLRNPRRPGNGPTSPYSGSSPS----RHPED 588
            +Y VLGV+ G S E++R+AYRR A++WHPDKN GN E+AE++FK++ +AY+ L D R R  Y+ + R+ RR G G +SP+ G   S    R+PED
Sbjct:    4 HYEVLGVQAGASPEDIRKAYRRLALRWHPDKNPGNKEEAERRFKQVSEAYEVLSDGRRRSAYDRAGRDSRRAG-GASSPHGGPFGSGYTFRNPED 97

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BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: A0A6J0TZF1_9SAUR (dnaJ homolog subfamily B member 8 n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0TZF1_9SAUR)

HSP 1 Score: 82.4 bits (202), Expect = 1.270e-15
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1

Query:  316 YYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDYNDSLRNPRRPGNGPTS-----PYSGSSPSRHPED-------AGDFFSTAFYTRMREQATSGG 651
            YY VLG+    S E++++AYR+ A+KWHPDKN  N E+AEKKFK + +AY+ L DP+ R  Y+  ++ PR  G GP+      P+      R PE+           F T F+    E   SGG
Sbjct:    4 YYQVLGLHQNASQEDIKKAYRKLALKWHPDKNPYNKEEAEKKFKTVSEAYEVLSDPQKRSLYDRPVKEPRYRGRGPSEGHFHHPFDFDFVFRSPEEIFREFFEGMGIFDTDFWDNQLEDDNSGG 127

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BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: Q3KZ97_SCHJA (SJCHGC02938 protein (Fragment) n=1 Tax=Schistosoma japonicum TaxID=6182 RepID=Q3KZ97_SCHJA)

HSP 1 Score: 79.3 bits (194), Expect = 1.940e-15
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 1

Query:  307 SKTYYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDY 501
            S  YY VLG+    +DE +RRAYRR A+KWHPDKN  N+ +AEKKFKEI  AY+ L DP+ R  Y
Sbjct:    3 SVCYYKVLGLTQTATDEEVRRAYRRLALKWHPDKNPTNLTEAEKKFKEISAAYEILSDPQKRAVY 67

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BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: A0A8C6YN09_NAJNA (J domain-containing protein n=1 Tax=Naja naja TaxID=35670 RepID=A0A8C6YN09_NAJNA)

HSP 1 Score: 79.3 bits (194), Expect = 2.500e-15
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 1

Query:  316 YYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDYNDSLRNPRRPGNG-----PTSPYSGSSPSRHPED 588
            YY VLG+    S E+++RAYR+ A+KWHPDKN  N E AEKKFK + +AY+ L DP+ R  Y+  ++ PR  G G     P SP+      R PE+
Sbjct:    4 YYEVLGLNQNASQEDIKRAYRKLALKWHPDKNPYNKEDAEKKFKAVAEAYEVLSDPQKRSLYDRPVKEPRFRGRGASGIFPHSPFDFDFVFRSPEE 99

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BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: G3HIC8_CRIGR (DNAJB8 n=15 Tax=Muroidea TaxID=337687 RepID=G3HIC8_CRIGR)

HSP 1 Score: 81.6 bits (200), Expect = 2.790e-15
Identity = 50/127 (39.37%), Postives = 71/127 (55.91%), Query Frame = 1

Query:  316 YYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDYNDSLRNPRRPGNGPT----SPYSGSSPSRHPED------------AGDFFSTAFYTRMREQATSG 648
            YY VLGV+   S E++++AYR+ A++WHPDKN  N E+AEKKFK++ +AY+ L D + R  Y+ +  +  R G G      SP+    P R+PED            + DF+ T F  R R   T G
Sbjct:    4 YYEVLGVQSSASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKQVSEAYEVLSDSKKRSLYDRAGCDSWRAGGGGNVPHGSPFGAGYPFRNPEDIFREFFGGMDPFSFDFWDTPFSDRGRTHGTRG 130

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BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: UPI0012620887 (dnaJ homolog subfamily B member 8 isoform X5 n=1 Tax=Mastomys coucha TaxID=35658 RepID=UPI0012620887)

HSP 1 Score: 80.1 bits (196), Expect = 4.680e-15
Identity = 49/127 (38.58%), Postives = 71/127 (55.91%), Query Frame = 1

Query:  316 YYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDYNDSLRNPRRPGNGPTSPYSG----SSPSRHPED------------AGDFFSTAFYTRMREQATSG 648
            YY VLGV+   S E++++AYR+ A++WHPDKN  N E+AEKKFK++ +AY+ L D + R  Y+ +     R G G + P+SG      P R+PED            + +F+ T F  R R     G
Sbjct:    4 YYEVLGVQSSASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKQVSEAYEVLSDSKKRSVYDRAGCEGWRAGGGASVPHSGPFGAGYPFRNPEDIFREFFGGLDPFSFEFWDTPFSNRGRSHGLRG 130

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BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: UPI00200D7541 (DnaJ domain-containing protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI00200D7541)

HSP 1 Score: 76.6 bits (187), Expect = 5.430e-15
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1

Query:  316 YYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDY 501
            YY +LGV+    D++L++AYR+ A+KWHPDKN  N ++AE KFK+I +AYD L DP+ R  Y
Sbjct:    5 YYKILGVDRSAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAIY 66

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BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: A0A3Q0KMN2_SCHMA (DNAj-related n=3 Tax=Schistosoma mansoni TaxID=6183 RepID=A0A3Q0KMN2_SCHMA)

HSP 1 Score: 81.6 bits (200), Expect = 6.370e-15
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1

Query:  316 YYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDY 501
            YY VLG+    +DE +RRAYRR A+KWHPDKN  N+E+AEKKFKEI  AY+ L DP+ R  Y
Sbjct:    6 YYKVLGLTKTATDEEVRRAYRRLALKWHPDKNPTNLEEAEKKFKEISAAYEVLSDPQKRSVY 67

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot

BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A7S3Y7G2_HETAK	4.650e-17	50.00	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A5N4D089_CAMDR	7.020e-17	41.09	DnaJ-like protein subfamily B member 8 n=1 Tax=Cam...	[more]
A0A8B8R9I9_CAMFR	1.070e-16	49.47	dnaJ homolog subfamily B member 8 n=2 Tax=Camelus ...	[more]
A0A6J0TZF1_9SAUR	1.270e-15	39.52	dnaJ homolog subfamily B member 8 n=1 Tax=Pogona v...	[more]
Q3KZ97_SCHJA	1.940e-15	58.46	SJCHGC02938 protein (Fragment) n=1 Tax=Schistosoma...	[more]
A0A8C6YN09_NAJNA	2.500e-15	45.83	J domain-containing protein n=1 Tax=Naja naja TaxI...	[more]
G3HIC8_CRIGR	2.790e-15	39.37	DNAJB8 n=15 Tax=Muroidea TaxID=337687 RepID=G3HIC8...	[more]
UPI0012620887	4.680e-15	38.58	dnaJ homolog subfamily B member 8 isoform X5 n=1 T...	[more]
UPI00200D7541	5.430e-15	53.23	DnaJ domain-containing protein n=1 Tax=Escherichia...	[more]
A0A3Q0KMN2_SCHMA	6.370e-15	61.29	DNAj-related n=3 Tax=Schistosoma mansoni TaxID=618...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Mammalia
Seed ortholog score	85.1
Seed ortholog evalue	4.4e-14
Seed eggNOG ortholog	10029.XP_007622751.1
Preferred name	DNAJB8
KEGG ko	ko:K09514
Hectar predicted targeting category	signal anchor
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006457,GO:0008150,GO:0009987,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044183,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051082,GO:0051087,GO:0051128,GO:0051129,GO:0061077,GO:0065007,GO:0090083,GO:0090084
EggNOG free text desc.	DnaJ molecular chaperone homology domain
EggNOG OGs	35I5Z@314146,39STJ@33154,3BGE0@33208,3CSMS@33213,3J2XB@40674,489JU@7711,497C0@7742,4Q38W@9989,COG0484@1,KOG0714@2759
COG Functional cat.	O
Best tax level	Rodentia
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03110
Exons	4
Model size	664
Cds size	663
Stop	0
Start	0

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig105:127513..129390+
coding sequence from alignment at C-linearis_contig105:127513..129390+

protein sequence of mRNA_C-linearis_contig105.938.1

>prot_C-linearis_contig105.938.1 ID=prot_C-linearis_contig105.938.1|Name=mRNA_C-linearis_contig105.938.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=221bp
AATHVPLLPARLWAAMSPDARRKGAKGPMFCNRGGGYTFVQPNTCVLVAP
IASTSTSGFKQTRGARRRCCAAVVGKAWCWLLLVLLMVSGSPLLFTCAAA
AASKTYYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKE
IQKAYDTLRDPRSRGDYNDSLRNPRRPGNGPTSPYSGSSPSRHPEDAGDF
FSTAFYTRMREQATSGGAGMG

mRNA from alignment at C-linearis_contig105:127513..129390+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig105.938.1 ID=mRNA_C-linearis_contig105.938.1|Name=mRNA_C-linearis_contig105.938.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1878bp|location=Sequence derived from alignment at C-linearis_contig105:127513..129390+ (Chordaria linearis ClinC8C monoicous)
GCAGCTACCCATGTACCGCTGCTCCCTGCAAGGTTGTGGGCTGCGATGTC
CCCCGATGCAAGAAGGAAAGGGGCCAAAGGGCCCATGTTTTGCAATCGAG
GAGGTGGGTACACGTTCGTACAACCGAACACGTGTGTCCTCGTAGCACCG
ATCGCCTCAACTTCCACCTCCGGGTTCAAACAGACGCGCGGAGCAAGGAG
GCGCTGCTGTGCTGCTGTCGTGGGGAAGGCTTGGTGCTGGCTTCTGCTGG
TGCTTCTGATGGTTTCGGGTTCCCCATTGCTCTTCACTTGTGCCGCAGCG
GCAGCGAGCAAGACCTACTACTCAGGCGAGGGGGAAATAGTAGATAGTGT
CGCTGAGTTTACAGAGTACTAGGGTGCAGATCTCCGCCTGTGTTGGTGCT
GGCTACATCAAAGGGAGATAGTCTGGCGAGCTTGACAACAACCTTCAGAC
TTGCCTCAAGGAGGGTGGTGGTAGTGCTAATGTTATGGTCACAGGTCGAT
CCCTCTTTGAGCTCTCTTAAGGAGCGCAGCATAGGGCCACAATCGATTGC
ATCGTGACACTGCATGCAAACTTTTTTGTCTACTGCTGTAGAATGTCTGC
TCTCTCGAGACCGACAAATACAGCAGAGTTGACAAGTCCAGCTGGTACAT
ATCTCCCATGAGAGCAAAACGGCACTCTCGGCGTCCCCTGCCGTACCCGC
TTTCGAAGACACACGGCGCGTGGTAAGAAAGAGGATGCCCTAAGATCGGC
TCCATGTTTGTTCGACATTCGGCGCTTGAACGAACGATCTACTGCTCATG
TTCTTTCCTTTCTTCAGTGCTGGGTGTGGAGCCCGGGGTGAGCGACGAGA
ACCTGAGGCGGGCCTACAGGCGAGCGGCGGTAAAGTGGCACCCGGACAAA
AACACTGGCAACATCGAGCAGGCCGAGAAGAAGTTCAAGGAGATTCAGAA
GGTACGTTTGGCCAATATGCCTGGCGAAGCCGCTTTTCTGACAAGACCCC
CCCGGGAAGACGATCAGTGCTGGGAAAACGTTAACGACGTTGCAAGCGTC
AGGGCTTTCGGTGTTGTGTAACGTGCAAAGAGGATTGTTCGAGCGTGGGG
GGAAATCGGGGTGTTTCGTGGGTAGGGCGACGAGTAACGTCGGCCACCTT
CGTACCTGGGTTGCTTCTACAGACGGTGGTTCTCGTTTGTGGCCACCCAC
GCCACGTGTCGTGATATCGATGCTGCTCGGGGGCGGCATGTCGTGATTCT
CCTGTGTCCGTTTCCTGTCACAGGCGTACGATACCCTCAGAGACCCTAGA
AGCAGAGGGGACTACAACGACAGCCTGAGAAATCCGGTGAGTGACAAGAG
ACAAGAAACGGCGGCAAGTACCGAGTGTCTTATGTGCAGCGGCCAATGAT
CACCTTTCGAACTACTTCGGCAACACACGCAACATATGTTGGGATAGCCC
CCCAAACGATTTTCTCGGCCACGGTGGCTGACATGACAAGACGAGGTCAC
GAGATCATCGCGTTTCAGCAACAACGACCGCCTTCCCCACCCACAACACA
GAAATAGCCAAAAACCAGTAGCAACAGCAAAAAGCAACATCTAAGAGCTG
CCAGCATAAGCAACAACAGAAGCAGCACCAGAAGCAGCATCAACCAACGC
TACGCCACCAAACCGTCCAAAACGCAACAACAAAACAGAATACACCCACC
ACCCCCAAATTCCGCCGCCCGCCCCCCCGCCAAACAGAGGAGGCCCGGTA
ACGGTCCCACGTCTCCCTACAGCGGCAGCAGCCCCTCTCGCCACCCCGAA
GATGCCGGAGATTTCTTCTCGACGGCCTTCTACACGAGGATGAGAGAGCA
AGCGACATCGGGAGGGGCGGGGATGGGG

Coding sequence (CDS) from alignment at C-linearis_contig105:127513..129390+

>mRNA_C-linearis_contig105.938.1 ID=mRNA_C-linearis_contig105.938.1|Name=mRNA_C-linearis_contig105.938.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1326bp|location=Sequence derived from alignment at C-linearis_contig105:127513..129390+ (Chordaria linearis ClinC8C monoicous)
GCAGCTACCCATGTACCGCTGCTCCCTGCAAGGTTGTGGGCTGCGATGTC
CCCCGATGCAAGAAGGAAAGGGGCCAAAGGGCCCATGTTTTGCAATCGAG
GAGGTGGGTACACGTTCGTACAACCGAACACGTGTGTCCTCGTAGCACCG
ATCGCCTCAACTTCCACCTCCGGGTTCAAACAGACGCGCGGAGCAAGGAG
GCGCTGCTGTGCTGCTGTCGTGGGGAAGGCTTGGTGCTGGCTTCTGCTGG
TGCTTCTGATGGTTTCGGGTTCCCCATTGCTCTTCACTTGTGCCGCAGCG
GCAGCGAGCAAGACCTACTACTCAGGCAGCTACCCATGTACCGCTGCTCC
CTGCAAGGTTGTGGGCTGCGATGTCCCCCGATGCAAGAAGGAAAGGGGCC
AAAGGGCCCATGTTTTGCAATCGAGGAGGTGGGTACACGTTCGTACAACC
GAACACGTGTGTCCTCGTAGCACCGATCGCCTCAACTTCCACCTCCGGGT
TCAAACAGACGCGCGGAGCAAGGAGGCGCTGCTGTGCTGCTGTCGTGGGG
AAGGCTTGGTGCTGGCTTCTGCTGGTGCTTCTGATGGTTTCGGGTTCCCC
ATTGCTCTTCACTTGTGCCGCAGCGGCAGCGAGCAAGACCTACTACTCAG
TGCTGGGTGTGGAGCCCGGGGTGAGCGACGAGAACCTGAGGCGGGCCTAC
AGGCGAGCGGCGGTAAAGTGGCACCCGGACAAAAACACTGGCAACATCGA
GCAGGCCGAGAAGAAGTTCAAGGAGATTCAGAAGTGCTGGGTGTGGAGCC
CGGGGTGAGCGACGAGAACCTGAGGCGGGCCTACAGGCGAGCGGCGGTAA
AGTGGCACCCGGACAAAAACACTGGCAACATCGAGCAGGCCGAGAAGAAG
TTCAAGGAGATTCAGAAGGCGTACGATACCCTCAGAGACCCTAGAAGCAG
AGGGGACTACAACGACAGCCTGAGAAATCCGGCGTACGATACCCTCAGAG
ACCCTAGAAGCAGAGGGGACTACAACGACAGCCTGAGAAATCCGAGGAGG
CCCGGTAACGGTCCCACGTCTCCCTACAGCGGCAGCAGCCCCTCTCGCCA
CCCCGAAGATGCCGGAGATTTCTTCTCGACGGCCTTCTACACGAGGATGA
GAGAGCAAGCGACATCGGGAGGGGCGGGGATGGGGAGGAGGCCCGGTAAC
GGTCCCACGTCTCCCTACAGCGGCAGCAGCCCCTCTCGCCACCCCGAAGA
TGCCGGAGATTTCTTCTCGACGGCCTTCTACACGAGGATGAGAGAGCAAG
CGACATCGGGAGGGGCGGGGATGGGG