mRNA_C-linearis_contig105.938.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: A0A7S3Y7G2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7G2_HETAK) HSP 1 Score: 88.6 bits (218), Expect = 4.650e-17 Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = 1 Query: 313 TYYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDYNDSLRNPRRPGNGPTSPYSG-SSPSRHPEDAGDFF 603
++Y+VLGVEP S E +++AYR+ AVKWHPDKN N E AEKKFKEIQ+AY T+ +P R Y+ S + P +G Y G ++ EDAG+FF
Sbjct: 49 SHYTVLGVEPKASQEEIKKAYRKLAVKWHPDKNVDNKEMAEKKFKEIQEAYSTVSNPEKRQQYDLSTKRGHAPESGRGPAYRGYNTYGSRGEDAGNFF 146
BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: A0A5N4D089_CAMDR (DnaJ-like protein subfamily B member 8 n=1 Tax=Camelus dromedarius TaxID=9838 RepID=A0A5N4D089_CAMDR) HSP 1 Score: 84.7 bits (208), Expect = 7.020e-17 Identity = 53/129 (41.09%), Postives = 79/129 (61.24%), Query Frame = 1 Query: 316 YYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDYNDSLRNPRRPGNGPTSPYSGSSPS----RHPED------------AGDFFSTAFYTRMREQATSGGA 654
+Y VLG++ G S E++R+AYRR A++WHPDKN GN E+AE++FK++ +AY+ L D R R Y+ + R+ RR G G +SP+ G S R+PED + DF+ + +AT+GGA
Sbjct: 4 HYEVLGLQAGASPEDIRKAYRRLALRWHPDKNPGNKEEAERRFKQVSEAYEVLSDCRRRSAYDRAGRDSRRAG-GASSPHGGPFGSGYTFRNPEDIFREFFGGLDPFSFDFWDGPLGSERGGRATAGGA 131
BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: A0A8B8R9I9_CAMFR (dnaJ homolog subfamily B member 8 n=2 Tax=Camelus TaxID=9836 RepID=A0A8B8R9I9_CAMFR) HSP 1 Score: 85.5 bits (210), Expect = 1.070e-16 Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 1 Query: 316 YYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDYNDSLRNPRRPGNGPTSPYSGSSPS----RHPED 588
+Y VLGV+ G S E++R+AYRR A++WHPDKN GN E+AE++FK++ +AY+ L D R R Y+ + R+ RR G G +SP+ G S R+PED
Sbjct: 4 HYEVLGVQAGASPEDIRKAYRRLALRWHPDKNPGNKEEAERRFKQVSEAYEVLSDGRRRSAYDRAGRDSRRAG-GASSPHGGPFGSGYTFRNPED 97
BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: A0A6J0TZF1_9SAUR (dnaJ homolog subfamily B member 8 n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0TZF1_9SAUR) HSP 1 Score: 82.4 bits (202), Expect = 1.270e-15 Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1 Query: 316 YYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDYNDSLRNPRRPGNGPTS-----PYSGSSPSRHPED-------AGDFFSTAFYTRMREQATSGG 651
YY VLG+ S E++++AYR+ A+KWHPDKN N E+AEKKFK + +AY+ L DP+ R Y+ ++ PR G GP+ P+ R PE+ F T F+ E SGG
Sbjct: 4 YYQVLGLHQNASQEDIKKAYRKLALKWHPDKNPYNKEEAEKKFKTVSEAYEVLSDPQKRSLYDRPVKEPRYRGRGPSEGHFHHPFDFDFVFRSPEEIFREFFEGMGIFDTDFWDNQLEDDNSGG 127
BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: Q3KZ97_SCHJA (SJCHGC02938 protein (Fragment) n=1 Tax=Schistosoma japonicum TaxID=6182 RepID=Q3KZ97_SCHJA) HSP 1 Score: 79.3 bits (194), Expect = 1.940e-15 Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 1 Query: 307 SKTYYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDY 501
S YY VLG+ +DE +RRAYRR A+KWHPDKN N+ +AEKKFKEI AY+ L DP+ R Y
Sbjct: 3 SVCYYKVLGLTQTATDEEVRRAYRRLALKWHPDKNPTNLTEAEKKFKEISAAYEILSDPQKRAVY 67
BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: A0A8C6YN09_NAJNA (J domain-containing protein n=1 Tax=Naja naja TaxID=35670 RepID=A0A8C6YN09_NAJNA) HSP 1 Score: 79.3 bits (194), Expect = 2.500e-15 Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 1 Query: 316 YYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDYNDSLRNPRRPGNG-----PTSPYSGSSPSRHPED 588
YY VLG+ S E+++RAYR+ A+KWHPDKN N E AEKKFK + +AY+ L DP+ R Y+ ++ PR G G P SP+ R PE+
Sbjct: 4 YYEVLGLNQNASQEDIKRAYRKLALKWHPDKNPYNKEDAEKKFKAVAEAYEVLSDPQKRSLYDRPVKEPRFRGRGASGIFPHSPFDFDFVFRSPEE 99
BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: G3HIC8_CRIGR (DNAJB8 n=15 Tax=Muroidea TaxID=337687 RepID=G3HIC8_CRIGR) HSP 1 Score: 81.6 bits (200), Expect = 2.790e-15 Identity = 50/127 (39.37%), Postives = 71/127 (55.91%), Query Frame = 1 Query: 316 YYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDYNDSLRNPRRPGNGPT----SPYSGSSPSRHPED------------AGDFFSTAFYTRMREQATSG 648
YY VLGV+ S E++++AYR+ A++WHPDKN N E+AEKKFK++ +AY+ L D + R Y+ + + R G G SP+ P R+PED + DF+ T F R R T G
Sbjct: 4 YYEVLGVQSSASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKQVSEAYEVLSDSKKRSLYDRAGCDSWRAGGGGNVPHGSPFGAGYPFRNPEDIFREFFGGMDPFSFDFWDTPFSDRGRTHGTRG 130
BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: UPI0012620887 (dnaJ homolog subfamily B member 8 isoform X5 n=1 Tax=Mastomys coucha TaxID=35658 RepID=UPI0012620887) HSP 1 Score: 80.1 bits (196), Expect = 4.680e-15 Identity = 49/127 (38.58%), Postives = 71/127 (55.91%), Query Frame = 1 Query: 316 YYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDYNDSLRNPRRPGNGPTSPYSG----SSPSRHPED------------AGDFFSTAFYTRMREQATSG 648
YY VLGV+ S E++++AYR+ A++WHPDKN N E+AEKKFK++ +AY+ L D + R Y+ + R G G + P+SG P R+PED + +F+ T F R R G
Sbjct: 4 YYEVLGVQSSASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKQVSEAYEVLSDSKKRSVYDRAGCEGWRAGGGASVPHSGPFGAGYPFRNPEDIFREFFGGLDPFSFEFWDTPFSNRGRSHGLRG 130
BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: UPI00200D7541 (DnaJ domain-containing protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI00200D7541) HSP 1 Score: 76.6 bits (187), Expect = 5.430e-15 Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 316 YYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDY 501
YY +LGV+ D++L++AYR+ A+KWHPDKN N ++AE KFK+I +AYD L DP+ R Y
Sbjct: 5 YYKILGVDRSAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAIY 66
BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Match: A0A3Q0KMN2_SCHMA (DNAj-related n=3 Tax=Schistosoma mansoni TaxID=6183 RepID=A0A3Q0KMN2_SCHMA) HSP 1 Score: 81.6 bits (200), Expect = 6.370e-15 Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 316 YYSVLGVEPGVSDENLRRAYRRAAVKWHPDKNTGNIEQAEKKFKEIQKAYDTLRDPRSRGDY 501
YY VLG+ +DE +RRAYRR A+KWHPDKN N+E+AEKKFKEI AY+ L DP+ R Y
Sbjct: 6 YYKVLGLTKTATDEEVRRAYRRLALKWHPDKNPTNLEEAEKKFKEISAAYEVLSDPQKRSVY 67 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.938.1 >prot_C-linearis_contig105.938.1 ID=prot_C-linearis_contig105.938.1|Name=mRNA_C-linearis_contig105.938.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=221bp AATHVPLLPARLWAAMSPDARRKGAKGPMFCNRGGGYTFVQPNTCVLVAPback to top mRNA from alignment at C-linearis_contig105:127513..129390+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.938.1 ID=mRNA_C-linearis_contig105.938.1|Name=mRNA_C-linearis_contig105.938.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1878bp|location=Sequence derived from alignment at C-linearis_contig105:127513..129390+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:127513..129390+ >mRNA_C-linearis_contig105.938.1 ID=mRNA_C-linearis_contig105.938.1|Name=mRNA_C-linearis_contig105.938.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1326bp|location=Sequence derived from alignment at C-linearis_contig105:127513..129390+ (Chordaria linearis ClinC8C monoicous)back to top |