mRNA_C-linearis_contig105.934.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig105.934.1 vs. uniprot
Match: A0A6H5JEN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEN2_9PHAE) HSP 1 Score: 274 bits (700), Expect = 1.810e-77 Identity = 240/492 (48.78%), Postives = 291/492 (59.15%), Query Frame = 2 Query: 200 QATKRPR-EKALDSYTPSTYMAYLEGTLLANGDLK-GSWRVRREDEAQNDFCMILVGRGLYDGAFNIQVPQPNASAPSVLDISDKWHSFEWVETTQPACNVWGRGQNTAFGEFFTIGVHDPTQRRIVIYKVCEKEMLRAQAFARIDNAAVAPVTAKPGPDHAAAAVPAPPTITAPAQXXXXXXXXXXXXXXXXXXXXXLTPRGGTRQRSRGFASSRPADFAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTMSEEXXXXXPALGGCRTTSRPVAKMPKPSEDAPLPAPVPIPTEGPVVQMRPAFASITSTFSLPGFSGRFDDASTTSTTSGGGAHVAGASADELADLSILGARLQKEKLKIQEAARARRQPLLQEKGRFGLDLQKGEEDEAVMLRAIQELRKKMAEDGQRLESATRRLQVWRAALYMAEFFWGRK 1669
+AT PR EK+L S+ P++YMA LEGTLL NGD+K GSWR RRED+ DF M+L+ +G+YDG FN+QVP SAPSV ++ DKWHSFEWVETT CNVWGRG+N FGEF+TIGVHDP QRRIVIYKVCE EM RAQAFA+I + P P AA P+ P + AP + XXXXXXXXXXXXX +++ R + +S P + AAA XXXXXXXXXXXXX XXXXXXXXXXXXXX M+EE XXX R + P ++ K E+ P PVPIP E +R +LPGFSGRF+DAST A AS DELADLSILGARLQ+EK+KIQE ARA+RQP ++K + +QKG DEA+MLRA+QELRK+M ED ++LESAT+ ++ + A A W K
Sbjct: 9 RATAEPRKEKSLHSFIPTSYMALLEGTLLTNGDIKDGSWRPRREDDVSQDFLMVLMDKGVYDGGFNLQVPNTRPSAPSVQEVHDKWHSFEWVETTTSTCNVWGRGRNNQFGEFYTIGVHDPRQRRIVIYKVCEAEMRRAQAFAQIT---ITPAGCLP------AAAPSNPGLAAPKRTRLATAKAXXXXXXXXXXXXXX------QKQPRTYDAS-PREMAAAATLMYQQNLTVETGAXXXXXXXXXXXXXGCYPRVDAFCPSNDGDAXXXXXXXXXXXXXXVRSGL---------------------MNEEGSXXXXXXXXXRPLALPAPQVHK--ENPARPTPVPIPAE-----VR----------ALPGFSGRFEDASTMD--------FANASMDELADLSILGARLQREKVKIQEDARAQRQPFEEQKKEYQSKVQKGRADEAMMLRAVQELRKQMLEDERKLESATQCVKSYEAEEQHALMLWNEK 438
BLAST of mRNA_C-linearis_contig105.934.1 vs. uniprot
Match: D7FMQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMQ5_ECTSI) HSP 1 Score: 270 bits (691), Expect = 1.550e-76 Identity = 207/471 (43.95%), Postives = 254/471 (53.93%), Query Frame = 2 Query: 257 MAYLEGTLLANGDLKGSWRVRREDEAQNDFCMILVGRGLYDGAFNIQVPQPNASAPSVLDISDKWHSFEWVETTQPACNVWGRGQNTAFGEFFTIGVHDPTQRRIVIYKVCEKEMLRAQAFARIDNAAVAPVTAKPGPDHAAAAVPAPPTITAPAQXXXXXXXXXXXXXXXXXXXXXLTPRGGTRQRSRGFASSRPADFAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTMSEEXXXXXPALGGCRTTSRPVAKMPKPSEDAPLPAPVPIPTEGPVVQMRPAFASITSTFSLPGFSGRFDDASTTSTTSGGGAHVAGASADELADLSILGARLQKEKLKIQEAARARRQPLLQEKGRFGLDLQKGEEDEAVMLRAIQELRKKMAEDGQRLESATRRLQVWRAALYMAEFFWGRK 1669
MA LEGTLL NGD+KGSWR RREDE DF M+L+ +G+YDG FN+Q+P SAPSV ++ DKWHSFEWVETT+ +CNVWGRG N FGEF+TIGVHDP QRRIVIYKVCE EM RAQAFA++ + + A A P+ P + AP + GG ++R R + +S P + AAA XXXXXXXXXXXX X XXXXXPALGG R + P ++ K E+ P PVPIP E +R +LPGFSGRF+DAST A AS DELADLSILGARLQ+EK+KIQE ARA+RQP ++K + +QKG DEA+MLRA+QELRK+M ED ++LESAT+ ++ + A A W K
Sbjct: 1 MALLEGTLLTNGDIKGSWRARREDEVSQDFLMVLMDKGVYDGGFNLQLPNTRPSAPSVQEVHDKWHSFEWVETTKSSCNVWGRGLNNQFGEFYTIGVHDPRQRRIVIYKVCEAEMRRAQAFAQMTITSAGRLPA---------AAPSDPGLAAPKRTRSATAKAAAV----------AATAGGRQKRPRAYDAS-PREMAAAATLLYQQNLTVETGACXXXXXXXXXXXXGCYPRVDAFCPSYDGDAGGX-------------------------------------XXXXXXXXXPALGGGRPLAFPAPQVHK--ENPARPTPVPIPAE-----VR----------ALPGFSGRFEDASTVD--------FANASMDELADLSILGARLQREKVKIQEDARAQRQPFEEQKKEYQSKVQKGRADEAMMLRAVQELRKQMLEDERKLESATQCVKSYEAEEQHALMLWNEK 389 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.934.1 >prot_C-linearis_contig105.934.1 ID=prot_C-linearis_contig105.934.1|Name=mRNA_C-linearis_contig105.934.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=597bp MKQQQQQQATKRPREKALDSYTPSTYMAYLEGTLLANGDLKGSWRVRREDback to top mRNA from alignment at C-linearis_contig105:83741..97088+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.934.1 ID=mRNA_C-linearis_contig105.934.1|Name=mRNA_C-linearis_contig105.934.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=13348bp|location=Sequence derived from alignment at C-linearis_contig105:83741..97088+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:83741..97088+ >mRNA_C-linearis_contig105.934.1 ID=mRNA_C-linearis_contig105.934.1|Name=mRNA_C-linearis_contig105.934.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3582bp|location=Sequence derived from alignment at C-linearis_contig105:83741..97088+ (Chordaria linearis ClinC8C monoicous)back to top |