mRNA_C-linearis_contig105.929.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig105.929.1 vs. uniprot
Match: D7FXV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV3_ECTSI) HSP 1 Score: 513 bits (1322), Expect = 2.840e-180 Identity = 245/289 (84.78%), Postives = 265/289 (91.70%), Query Frame = 1 Query: 1 MCDSCDAYRHESGGNKTIEYADHIRAKVTWTKPLLLGKEELRPFLTKDEAAFKIQQLHRNWRARETTRDAMRVAWNRVYSPQERRFFFFYKGKSPLILPTTASWVQPCRSIGGIWVWRPVLSDHVAAMRIQNMWRNFMGRRGLRQLVRQMYALEHDPITGTERYRNLQTGEVSVEKPLSLSSERWDQDDMMLWTVDEVVLFIRRCGLKRLTPRLRHFNVDGALLMTFDPEDFLLLGQADSVNAKKILLNIERRPAFNGYNKRAKDLLRRAALRQRHFEETQVEIIQRWW 867
MCDSCDAYRH+SGGNKTIEY DH RAKVTW+KP LLGKEELRPFLT +EAAFK+QQLHRNW+ARE RDAMRVAWNRVYSPQERRFFFFYKG+SPL+LPTTASW QPCRSIGGIWVWRPVLS+HVAAMRIQN+WRNF GRR LR+ VRQMY++EHDPITG E YRNL+TGEVS KPLSL SERWDQDDMMLWTV+EVV+FIRRCGLKR P++RHFNVDGALLMTFDPEDFLLLGQADSVNAKKILLNIERRPAF+GYNKRAKDLLRRAALRQRH E TQ ++ W
Sbjct: 1 MCDSCDAYRHQSGGNKTIEYTDHERAKVTWSKPRLLGKEELRPFLTVNEAAFKMQQLHRNWKAREIARDAMRVAWNRVYSPQERRFFFFYKGESPLVLPTTASWTQPCRSIGGIWVWRPVLSEHVAAMRIQNLWRNFAGRRDLRERVRQMYSMEHDPITGAECYRNLKTGEVSDRKPLSLGSERWDQDDMMLWTVEEVVMFIRRCGLKRFAPKIRHFNVDGALLMTFDPEDFLLLGQADSVNAKKILLNIERRPAFSGYNKRAKDLLRRAALRQRHLEGTQYTQVRLTW 289
BLAST of mRNA_C-linearis_contig105.929.1 vs. uniprot
Match: A0A835YL39_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL39_9STRA) HSP 1 Score: 323 bits (827), Expect = 3.670e-101 Identity = 151/282 (53.55%), Postives = 197/282 (69.86%), Query Frame = 1 Query: 25 RHESGGNKTIEYADHIRAKVTWTKPLLLGKEELRPFLTKDEAAFKIQQLHRNWRARETTRDAMRVAWNRVYSPQERRFFFFYKGKSPLILPTTASWVQPCRSIGGIWVWRPVLSDHVAAMRIQNMWRNFMGRRGLRQLVRQMYALEHDPITGTERYRNLQTGEVSVEKPLSLSSERWDQDDMMLWTVDEVVLFIRRCGLKRLTPRLRHFNVDGALLMTFDPEDFLLLGQADSVNAKKILLNIERRPAFNGYNKRAKDLLRRAALRQRHFEETQVEIIQRWWR 870
R+ S + Y +V+W KP +LG EELRPFLT+DEAAFK+QQLHRNWRARE R+ +R W+R+YSP E+RF++ YKG SPL+LP A W QPCR +G W+WRP+L++ +AA+R+Q WR GRR +R +VR++Y+L+ DPITG YRN TGEV KP+ L SE WD DMM W VD+ ++FIRRCGLK R + VDGALL+T DP D LLG + ++ K++LL IERRP F GYN R +D+LRR ALRQ ++ ++QRWWR
Sbjct: 108 RYYSSQRRRHYYCFTRTGRVSWHKPRVLGSEELRPFLTRDEAAFKMQQLHRNWRARERARNLLRRYWDRIYSPAEKRFYYHYKGDSPLVLPQRARWSQPCRMMGREWIWRPLLTESMAALRVQTFWRAASGRREIRDIVRRVYSLQSDPITGRPAYRNNITGEVQATKPVLLGSELWDPVDMMQWGVDQTIIFIRRCGLKPYARAFRRYGVDGALLLTLDPSDLALLGMDNPIHVKRVLLGIERRPGFQGYNTRPEDMLRRTALRQACRQDAAAAVLQRWWR 389
BLAST of mRNA_C-linearis_contig105.929.1 vs. uniprot
Match: A0A7S4E5F1_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E5F1_9STRA) HSP 1 Score: 186 bits (473), Expect = 6.220e-50 Identity = 129/393 (32.82%), Postives = 202/393 (51.40%), Query Frame = 1 Query: 46 KTIEYADHIRAKVTWTKPLLLGKEELRPFLTKDEAAFKIQQLHRNWRARETTRDAMRVAWNRVYSPQERRFFFFYKGKSPLILPTTASWVQPCRSIGGIWVWRPVL---SDHVAAMRIQNMWRNFMGRRGLRQLVRQMYALEHDPITGTERYRNLQTGEVSVEKPLSLSSERWDQDDMMLWTVDEVVLFIRRCGLKRLTPRLRHFNVDGALLMTFDPEDFLLLGQADSVNAKKILLNIERRPAFNGYNKRAKDLLRRAALRQRHFEETQVEIIQRWWRAMMRETLRRLWKQTFTTAKAQEERERKRIDSAIWWTDKVRDYSGLDASVKLFGRRGNILGARGWGRWDPRGERWTPAPEEVGTPHRSRLMYRDAPDSAAVPIHNVEEMLFKEDQA 1215
KT Y + +W KPL L + EL P+ + D+ F+IQ L R+ AR + +R +++++S + RF++ + GKS L+ P A W +P WR + S+ VAA+ IQN W + R+ + VR Y ++ DP+TG Y N+ T + +KP L SE D +DM LW + + +F RR G + P LR F+VDGALL++F+ +D++ LG S K++LL IE+R F + L+RR LR H E IQR +R + R + KA+++ E+ R + +WW+ K+++ D K++G R + GWG W GE+W P ++ PH+ R Y+ P + V + FK D A
Sbjct: 136 KTYFYFRPSIQETSWRKPLCLKEAELCPYPSFDDYVFRIQGLARHKAARNYLIELIRQTYDKIFSREYTRFYYHFNGKSTLV-PRVA-WTKP-----RFLYWRDLKAFKSEDVAALMIQNQWHAYKARQFMMNAVRAQYTVKTDPLTGRLMYTNVHTHKRGFKKPPLLGSEELDPEDMSLWGIYRLGVFFRRLGYGFIAPELRRFDVDGALLLSFEWQDYVDLGFTQSHVIKRVLLQIEKRAFFKSHRDLPVTLVRRDRLRYHHRVEKAAISIQRRYRVIYAALQRARAAERERVEKAKKKAEKDRKEGGLWWSGKIKNLPVPDHG-KVYGNR-TVETVHGWGSWI--GEKWVPLDDKT-RPHKQR--YKHNPLN--VRFKFARTLHFKNDDA 512 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.929.1 >prot_C-linearis_contig105.929.1 ID=prot_C-linearis_contig105.929.1|Name=mRNA_C-linearis_contig105.929.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=419bp MCDSCDAYRHESGGNKTIEYADHIRAKVTWTKPLLLGKEELRPFLTKDEAback to top mRNA from alignment at C-linearis_contig105:49588..55434- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.929.1 ID=mRNA_C-linearis_contig105.929.1|Name=mRNA_C-linearis_contig105.929.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5847bp|location=Sequence derived from alignment at C-linearis_contig105:49588..55434- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:49588..55434- >mRNA_C-linearis_contig105.929.1 ID=mRNA_C-linearis_contig105.929.1|Name=mRNA_C-linearis_contig105.929.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2514bp|location=Sequence derived from alignment at C-linearis_contig105:49588..55434- (Chordaria linearis ClinC8C monoicous)back to top |