mRNA_C-linearis_contig105.926.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig105.926.1
Unique NamemRNA_C-linearis_contig105.926.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:20132..20650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size519
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.926.1prot_C-linearis_contig105.926.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig105 20184..20546 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927391.6853676-UTR-C-linearis_contig105:20131..201831622927391.6853676-UTR-C-linearis_contig105:20131..20183Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 20132..20183 +
1690879672.7280817-UTR-C-linearis_contig105:20131..201831690879672.7280817-UTR-C-linearis_contig105:20131..20183Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 20132..20183 +
1622927391.7150147-UTR-C-linearis_contig105:20546..206501622927391.7150147-UTR-C-linearis_contig105:20546..20650Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 20547..20650 +
1690879672.753318-UTR-C-linearis_contig105:20546..206501690879672.753318-UTR-C-linearis_contig105:20546..20650Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 20547..20650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927391.699711-CDS-C-linearis_contig105:20183..205461622927391.699711-CDS-C-linearis_contig105:20183..20546Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 20184..20546 +
1690879672.7422414-CDS-C-linearis_contig105:20183..205461690879672.7422414-CDS-C-linearis_contig105:20183..20546Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 20184..20546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig105.926.1

>prot_C-linearis_contig105.926.1 ID=prot_C-linearis_contig105.926.1|Name=mRNA_C-linearis_contig105.926.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=121bp
MSARTRPVPLVMLERRGERIRKAQRHYVLRTCVTSGITMCSPRSSLVYRI
LAHVMAQGSRISYIIVNVSGLLSFWLFPGLVAGVNEMLMFRKLKIDLRSQ
IDTWGPSLAARCSRPCLMAC*
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mRNA from alignment at C-linearis_contig105:20132..20650+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig105.926.1 ID=mRNA_C-linearis_contig105.926.1|Name=mRNA_C-linearis_contig105.926.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=519bp|location=Sequence derived from alignment at C-linearis_contig105:20132..20650+ (Chordaria linearis ClinC8C monoicous)
GATGTTGTCGACGGAAGAACCGCGTCAGTCACAACTTGTTTGAATATTAT
ATATGTCGGCACGTACGCGTCCAGTTCCTTTGGTGATGCTTGAAAGAAGA
GGTGAACGAATACGAAAGGCTCAAAGACACTACGTGCTACGTACGTGCGT
GACGAGCGGTATCACGATGTGTTCACCCCGTAGCAGCTTGGTGTACCGAA
TACTTGCGCATGTGATGGCTCAAGGCAGCCGTATATCGTATATCATCGTA
AACGTTTCCGGCTTGTTGAGTTTTTGGCTTTTTCCGGGGTTGGTCGCGGG
GGTGAACGAAATGTTAATGTTCCGAAAGTTAAAGATAGATCTCAGATCTC
AGATCGATACGTGGGGGCCGAGCCTGGCTGCAAGATGTTCACGTCCCTGC
CTCATGGCGTGCTAAATATGCCTGGTCTTCAACCACCGGCTAGCGATGTC
TGGTCTTCAACCACCGGCTAGCGAAGTCTTGTTCTAGCTGGCGTTGTTGA
TACGGCTGTTGTTGATTCG
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Coding sequence (CDS) from alignment at C-linearis_contig105:20132..20650+

>mRNA_C-linearis_contig105.926.1 ID=mRNA_C-linearis_contig105.926.1|Name=mRNA_C-linearis_contig105.926.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at C-linearis_contig105:20132..20650+ (Chordaria linearis ClinC8C monoicous)
ATGTCGGCACGTACGCGTCCAGTTCCTTTGGTGATGCTTGAAAGAAGAGG
TGAACGAATACGAAAGGCTCAAAGACACTACGTGCTACGTACGTGCGTGA
CGAGCGGTATCACGATGTGTTCACCCCGTAGCAGCTTGGTGTACCGAATA
CTTGCGCATGTGATGGCTCAAGGCAGCCGTATATCGTATATCATCGTAAA
CGTTTCCGGCTTGTTGAGTTTTTGGCTTTTTCCGGGGTTGGTCGCGGGGG
TGAACGAAATGTTAATGTTCCGAAAGTTAAAGATAGATCTCAGATCTCAG
ATCGATACGTGGGGGCCGAGCCTGGCTGCAAGATGTTCACGTCCCTGCCT
CATGGCGTGCTAAATGTCGGCACGTACGCGTCCAGTTCCTTTGGTGATGC
TTGAAAGAAGAGGTGAACGAATACGAAAGGCTCAAAGACACTACGTGCTA
CGTACGTGCGTGACGAGCGGTATCACGATGTGTTCACCCCGTAGCAGCTT
GGTGTACCGAATACTTGCGCATGTGATGGCTCAAGGCAGCCGTATATCGT
ATATCATCGTAAACGTTTCCGGCTTGTTGAGTTTTTGGCTTTTTCCGGGG
TTGGTCGCGGGGGTGAACGAAATGTTAATGTTCCGAAAGTTAAAGATAGA
TCTCAGATCTCAGATCGATACGTGGGGGCCGAGCCTGGCTGCAAGATGTT
CACGTCCCTGCCTCATGGCGTGCTAA
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