Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal anchor |
| Exons | 1 |
| Model size | 519 |
| Cds size | 363 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927391.6853676-UTR-C-linearis_contig105:20131..20183 | 1622927391.6853676-UTR-C-linearis_contig105:20131..20183 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig105 20132..20183 + |
| 1690879672.7280817-UTR-C-linearis_contig105:20131..20183 | 1690879672.7280817-UTR-C-linearis_contig105:20131..20183 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig105 20132..20183 + |
| 1622927391.7150147-UTR-C-linearis_contig105:20546..20650 | 1622927391.7150147-UTR-C-linearis_contig105:20546..20650 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig105 20547..20650 + |
| 1690879672.753318-UTR-C-linearis_contig105:20546..20650 | 1690879672.753318-UTR-C-linearis_contig105:20546..20650 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig105 20547..20650 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927391.699711-CDS-C-linearis_contig105:20183..20546 | 1622927391.699711-CDS-C-linearis_contig105:20183..20546 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig105 20184..20546 + |
| 1690879672.7422414-CDS-C-linearis_contig105:20183..20546 | 1690879672.7422414-CDS-C-linearis_contig105:20183..20546 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig105 20184..20546 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.926.1 >prot_C-linearis_contig105.926.1 ID=prot_C-linearis_contig105.926.1|Name=mRNA_C-linearis_contig105.926.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=121bp
MSARTRPVPLVMLERRGERIRKAQRHYVLRTCVTSGITMCSPRSSLVYRI
LAHVMAQGSRISYIIVNVSGLLSFWLFPGLVAGVNEMLMFRKLKIDLRSQ
IDTWGPSLAARCSRPCLMAC* back to topmRNA from alignment at C-linearis_contig105:20132..20650+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig105.926.1 ID=mRNA_C-linearis_contig105.926.1|Name=mRNA_C-linearis_contig105.926.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=519bp|location=Sequence derived from alignment at C-linearis_contig105:20132..20650+ (Chordaria linearis ClinC8C monoicous)
GATGTTGTCGACGGAAGAACCGCGTCAGTCACAACTTGTTTGAATATTAT
ATATGTCGGCACGTACGCGTCCAGTTCCTTTGGTGATGCTTGAAAGAAGA
GGTGAACGAATACGAAAGGCTCAAAGACACTACGTGCTACGTACGTGCGT
GACGAGCGGTATCACGATGTGTTCACCCCGTAGCAGCTTGGTGTACCGAA
TACTTGCGCATGTGATGGCTCAAGGCAGCCGTATATCGTATATCATCGTA
AACGTTTCCGGCTTGTTGAGTTTTTGGCTTTTTCCGGGGTTGGTCGCGGG
GGTGAACGAAATGTTAATGTTCCGAAAGTTAAAGATAGATCTCAGATCTC
AGATCGATACGTGGGGGCCGAGCCTGGCTGCAAGATGTTCACGTCCCTGC
CTCATGGCGTGCTAAATATGCCTGGTCTTCAACCACCGGCTAGCGATGTC
TGGTCTTCAACCACCGGCTAGCGAAGTCTTGTTCTAGCTGGCGTTGTTGA
TACGGCTGTTGTTGATTCG back to topCoding sequence (CDS) from alignment at C-linearis_contig105:20132..20650+ >mRNA_C-linearis_contig105.926.1 ID=mRNA_C-linearis_contig105.926.1|Name=mRNA_C-linearis_contig105.926.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at C-linearis_contig105:20132..20650+ (Chordaria linearis ClinC8C monoicous)
ATGTCGGCACGTACGCGTCCAGTTCCTTTGGTGATGCTTGAAAGAAGAGG
TGAACGAATACGAAAGGCTCAAAGACACTACGTGCTACGTACGTGCGTGA
CGAGCGGTATCACGATGTGTTCACCCCGTAGCAGCTTGGTGTACCGAATA
CTTGCGCATGTGATGGCTCAAGGCAGCCGTATATCGTATATCATCGTAAA
CGTTTCCGGCTTGTTGAGTTTTTGGCTTTTTCCGGGGTTGGTCGCGGGGG
TGAACGAAATGTTAATGTTCCGAAAGTTAAAGATAGATCTCAGATCTCAG
ATCGATACGTGGGGGCCGAGCCTGGCTGCAAGATGTTCACGTCCCTGCCT
CATGGCGTGCTAAATGTCGGCACGTACGCGTCCAGTTCCTTTGGTGATGC
TTGAAAGAAGAGGTGAACGAATACGAAAGGCTCAAAGACACTACGTGCTA
CGTACGTGCGTGACGAGCGGTATCACGATGTGTTCACCCCGTAGCAGCTT
GGTGTACCGAATACTTGCGCATGTGATGGCTCAAGGCAGCCGTATATCGT
ATATCATCGTAAACGTTTCCGGCTTGTTGAGTTTTTGGCTTTTTCCGGGG
TTGGTCGCGGGGGTGAACGAAATGTTAATGTTCCGAAAGTTAAAGATAGA
TCTCAGATCTCAGATCGATACGTGGGGGCCGAGCCTGGCTGCAAGATGTT
CACGTCCCTGCCTCATGGCGTGCTAA back to top
|