mRNA_C-linearis_contig104.922.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.922.1 vs. uniprot
Match: D8LE97_ECTSI (Cell division cycle 123 homolog (S. cerevisiae) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE97_ECTSI) HSP 1 Score: 640 bits (1652), Expect = 2.220e-225 Identity = 334/465 (71.83%), Postives = 363/465 (78.06%), Query Frame = 1 Query: 31 MVPNVGADDKHEASVEE--EVPAAPPAEAVAADTPVQT---PAPTEKHVLNCQFSQWQPLFKHCTPRSVVLDLPEDVARYLQEDGVVLPKGFEMSCGQGVQDDSDDEVDWGNDEXXXXXDRPDFPGLHTLLSEAIASLGGAVFPKLNWSCPKDAAWVNGGSLKCSLPGDVLCLLKSSTFISHDLGHAFDACTDATISRPGTFTLVLRKWCNLHPSMLFRCFVRERRLVGVCQRDCTSYYGFLAEEADRLSELLEDFFAAEVCEKFPDPGCVADVYVDNRSRVWLLDVNPLSAVTDSLLFDWSEDALAAPLPPAAP---QEEEALPPGVFMRVHFNPAPHSPXXXXXXXXXXXXXXXXXXXXAGESSPRDSACSAGGAGEVGQPGNAPR--NLLAGATGSTLAGG-EGRGFELRCVPSSLHMVPDPMGRYRGPADVGMGTLMCGTGGSGGLELEDLIESCRLADNE 1392
MVPNVGA D E +V+E AA A AA+TP + PAPT+ HVLNCQF +W P+FKHCTPRSVVL LPEDV RYLQ+DGVVLPKGF+MSCG+GV+DDSDDEVDWGN E DRPDFP LH LLS+AIASLGGAVFPKLNWSCPKDAAWVNGGSLKC LPGDVLCL+KSSTFISHDL HAFDACT ++ISRP TFTLVLRKWCNLHPSMLFRCFVRERRLVGVCQRDCTSYYGFL EEADRLS LLE+FFAAEVC+KF DP CVADVYVDNRSRVWLLD+NP S VTDSLLFDWSED+LAAPLPP P + EE LPPGV MR+HF+P+ A + P DS + G PG R +L ATG TLAGG EGR FE RCVPSSLHMVPDPMGRYRGPADVGMGTL CGTGG+GGLELEDLIESCRLA+ +
Sbjct: 1 MVPNVGAGDTSEDAVQELNNTEAA----AAAAETPEPSGVSPAPTQGHVLNCQFGRWHPVFKHCTPRSVVLKLPEDVVRYLQQDGVVLPKGFQMSCGEGVRDDSDDEVDWGN-EDEDEQDRPDFPDLHALLSDAIASLGGAVFPKLNWSCPKDAAWVNGGSLKCKLPGDVLCLIKSSTFISHDLNHAFDACTGSSISRPETFTLVLRKWCNLHPSMLFRCFVRERRLVGVCQRDCTSYYGFLEEEADRLSTLLEEFFAAEVCKKFADPDCVADVYVDNRSRVWLLDMNPFSGVTDSLLFDWSEDSLAAPLPPRPPTLDRGEETLPPGVAMRIHFDPS--------STHGDQASSTPSGTVAARSNDPSDS--------QQGPPGGRTRATGVLERATGITLAGGGEGRDFEFRCVPSSLHMVPDPMGRYRGPADVGMGTLACGTGGNGGLELEDLIESCRLAEKD 444
BLAST of mRNA_C-linearis_contig104.922.1 vs. uniprot
Match: UPI00115596A3 (cell division cycle protein 123 homolog isoform X2 n=1 Tax=Suricata suricatta TaxID=37032 RepID=UPI00115596A3) HSP 1 Score: 249 bits (635), Expect = 2.370e-74 Identity = 122/261 (46.74%), Postives = 161/261 (61.69%), Query Frame = 1 Query: 151 EKHVLNCQFSQWQPLFKHCTPRSVVLDLPEDVARYLQEDGVVLPKGFE--MSCGQGVQDDSDDEVDWGNDEXXXXXDRPDFPGLHTLLSEAIASLGGAVFPKLNWSCPKDAAWVN-GGSLKCSLPGDVLCLLKSSTFISHDLGHAFDACTDATISRPGTFTLVLRKWCNLHPSMLFRCFVRERRLVGVCQRDCTSYYGFLAEEADRLSELLEDFFAAEVCEKFPDPGCVADVYVDNRSRVWLLDVNPLSAVTDSLLFDWSE 924
++HVL+CQFS W PLF+ T +SV+L LP++V YL +DG ++ G E +C Q DD +E+ W +DE P+FP T + EAI SLGG+VFPKLNWS P+DA W+ SLKC D+ L KSS FI+ D F CTD + + LVLRKWC L P FRCFV+E +L+GV QRD T YY ++++ + + ++DFF + KF D V DVY D+R +VWL+D NP VTDSLLF W E
Sbjct: 3 KEHVLHCQFSAWYPLFRSLTIKSVILPLPQNVKDYLLDDGTLVVSGREDPPTCSQPDSDDEAEEIQWSDDENTATLTAPEFPEFTTKVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKTLSDIFLLFKSSDFITRDFTQPFIHCTDDSPDPCIEYELVLRKWCELIPGAEFRCFVKENKLIGVSQRDYTQYYDHISKQKEEICRCIQDFFTKHIQYKFLDEDFVFDVYRDSRGKVWLIDFNPFGEVTDSLLFTWEE 263
BLAST of mRNA_C-linearis_contig104.922.1 vs. uniprot
Match: A0A337S4C1_FELCA (Cell division cycle protein 123 homolog n=2 Tax=Carnivora TaxID=33554 RepID=A0A337S4C1_FELCA) HSP 1 Score: 248 bits (632), Expect = 1.880e-73 Identity = 121/261 (46.36%), Postives = 160/261 (61.30%), Query Frame = 1 Query: 151 EKHVLNCQFSQWQPLFKHCTPRSVVLDLPEDVARYLQEDGVVLPKGFE--MSCGQGVQDDSDDEVDWGNDEXXXXXDRPDFPGLHTLLSEAIASLGGAVFPKLNWSCPKDAAWVN-GGSLKCSLPGDVLCLLKSSTFISHDLGHAFDACTDATISRPGTFTLVLRKWCNLHPSMLFRCFVRERRLVGVCQRDCTSYYGFLAEEADRLSELLEDFFAAEVCEKFPDPGCVADVYVDNRSRVWLLDVNPLSAVTDSLLFDWSE 924
++HVL CQFS W PLF+ T +SV+L LP++V YL +DG ++ G E +C Q DD +E+ W +DE P+FP T + EAI SLGG+VFPKLNWS P+DA W+ SLKC D+ L KSS FI+ D F CTD + + LVLRKWC L P FRCFV+E +L+G+ QRD T YY ++++ + + ++DFF + KF D V DVY D+R +VWL+D NP VTDSLLF W E
Sbjct: 3 KEHVLRCQFSAWYPLFRSLTIKSVILPLPQNVKDYLLDDGTLVVSGREDPPTCSQPDSDDEAEEIQWSDDENTATLTAPEFPEFTTKVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKTLSDIFLLFKSSDFITRDFTQPFIHCTDDSPDPCIEYELVLRKWCELIPGAEFRCFVKENKLIGISQRDYTQYYDHISKQKEEICRCIQDFFKKHIQYKFLDEDFVFDVYRDSRGKVWLIDFNPFGEVTDSLLFTWEE 263
BLAST of mRNA_C-linearis_contig104.922.1 vs. uniprot
Match: A0A2Y9DSI1_TRIMA (Cell division cycle protein 123 homolog n=4 Tax=Eutheria TaxID=9347 RepID=A0A2Y9DSI1_TRIMA) HSP 1 Score: 245 bits (625), Expect = 2.220e-72 Identity = 121/261 (46.36%), Postives = 160/261 (61.30%), Query Frame = 1 Query: 151 EKHVLNCQFSQWQPLFKHCTPRSVVLDLPEDVARYLQEDGVVLPKGFE--MSCGQGVQDDSDDEVDWGNDEXXXXXDRPDFPGLHTLLSEAIASLGGAVFPKLNWSCPKDAAWVN-GGSLKCSLPGDVLCLLKSSTFISHDLGHAFDACTDATISRPGTFTLVLRKWCNLHPSMLFRCFVRERRLVGVCQRDCTSYYGFLAEEADRLSELLEDFFAAEVCEKFPDPGCVADVYVDNRSRVWLLDVNPLSAVTDSLLFDWSE 924
++HVL+CQFS W PLF+ T +SV+L LP++V YL +DG ++ G E + Q DD +E+ W +DE P+FP T + EAI SLGG+VFPKLNWS P+DA W+ SLKC D+ L KSS FI+ D F CTD T + LVLRKWC L P FRCFV+E +L+G+ QRD T YY ++++ + + ++DFF + KF D V DVY D+R +VWL+D NP VTDSLLF W E
Sbjct: 3 KEHVLHCQFSAWYPLFRSLTIKSVILPLPQNVKDYLLDDGTLVVSGREDPPTHSQPDSDDEAEEIQWSDDENTATLTAPEFPEFTTKVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKTLSDIFLLFKSSDFITRDFTQPFIHCTDDTPDPCMEYELVLRKWCELIPGAEFRCFVKENKLIGISQRDYTQYYDHISKQKEEICRCIQDFFKKYIQYKFLDEDFVFDVYQDSRGKVWLIDFNPFGEVTDSLLFTWEE 263
BLAST of mRNA_C-linearis_contig104.922.1 vs. uniprot
Match: A0A2Y9RDU2_TRIMA (Cell division cycle protein 123 homolog n=5 Tax=Eutheria TaxID=9347 RepID=A0A2Y9RDU2_TRIMA) HSP 1 Score: 245 bits (626), Expect = 2.560e-72 Identity = 123/277 (44.40%), Postives = 162/277 (58.48%), Query Frame = 1 Query: 151 EKHVLNCQFSQWQPLFKHCTPRSVVLDLPEDVARYLQEDGVVLPKGFEMSCGQGVQ------------------DDSDDEVDWGNDEXXXXXDRPDFPGLHTLLSEAIASLGGAVFPKLNWSCPKDAAWVN-GGSLKCSLPGDVLCLLKSSTFISHDLGHAFDACTDATISRPGTFTLVLRKWCNLHPSMLFRCFVRERRLVGVCQRDCTSYYGFLAEEADRLSELLEDFFAAEVCEKFPDPGCVADVYVDNRSRVWLLDVNPLSAVTDSLLFDWSE 924
++HVL+CQFS W PLF+ T +SV+L LP++V YL +DG ++ G + S G G Q DD +E+ W +DE P+FP T + EAI SLGG+VFPKLNWS P+DA W+ SLKC D+ L KSS FI+ D F CTD T + LVLRKWC L P FRCFV+E +L+G+ QRD T YY ++++ + + ++DFF + KF D V DVY D+R +VWL+D NP VTDSLLF W E
Sbjct: 3 KEHVLHCQFSAWYPLFRSLTIKSVILPLPQNVKDYLLDDGTLVVSGSDCSAGVGRQFSCSLSREDPPTHSQPDSDDEAEEIQWSDDENTATLTAPEFPEFTTKVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKTLSDIFLLFKSSDFITRDFTQPFIHCTDDTPDPCMEYELVLRKWCELIPGAEFRCFVKENKLIGISQRDYTQYYDHISKQKEEICRCIQDFFKKYIQYKFLDEDFVFDVYQDSRGKVWLIDFNPFGEVTDSLLFTWEE 279
BLAST of mRNA_C-linearis_contig104.922.1 vs. uniprot
Match: A0A8C6BT16_MONMO (Cell division cycle protein 123 homolog n=7 Tax=Boreoeutheria TaxID=1437010 RepID=A0A8C6BT16_MONMO) HSP 1 Score: 244 bits (624), Expect = 3.020e-72 Identity = 118/261 (45.21%), Postives = 161/261 (61.69%), Query Frame = 1 Query: 151 EKHVLNCQFSQWQPLFKHCTPRSVVLDLPEDVARYLQEDGVVLPKGFE--MSCGQGVQDDSDDEVDWGNDEXXXXXDRPDFPGLHTLLSEAIASLGGAVFPKLNWSCPKDAAWVN-GGSLKCSLPGDVLCLLKSSTFISHDLGHAFDACTDATISRPGTFTLVLRKWCNLHPSMLFRCFVRERRLVGVCQRDCTSYYGFLAEEADRLSELLEDFFAAEVCEKFPDPGCVADVYVDNRSRVWLLDVNPLSAVTDSLLFDWSE 924
++HVL+CQFS W PLF+ T +SV+L LP++V YL +DG ++ G E +C Q D+ +E+ W +DE P+FP T + EAI SLGG+VFPKLNWS P+DA W+ SLKC D+ L KSS FI+ D F CTD + + LVLRKWC L P FRCFV+E +L+G+ QRD T YY ++++ + + ++DFF + KF D V D+Y D+R +VWL+D NP VTD+LLF W E
Sbjct: 3 KEHVLHCQFSAWYPLFRSLTIKSVILPLPQNVKDYLLDDGTLVVSGREDPPTCSQPDTDNDAEEIQWSDDENTATLTAPEFPEFTTKVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKTLSDIFLLFKSSDFITRDFTQPFIHCTDDSPDPCMEYELVLRKWCELIPGAEFRCFVKENKLIGISQRDYTQYYDHISKQKEEICRCIQDFFKKHIQYKFLDEDFVFDIYRDSRGKVWLIDFNPFGEVTDALLFTWDE 263
BLAST of mRNA_C-linearis_contig104.922.1 vs. uniprot
Match: UPI0014036B98 (cell division cycle protein 123 homolog n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI0014036B98) HSP 1 Score: 244 bits (624), Expect = 3.310e-72 Identity = 126/262 (48.09%), Postives = 160/262 (61.07%), Query Frame = 1 Query: 151 EKHVLNCQFSQWQPLFKHCTPRSVVLDLPEDVARYLQEDGVVLPKGFEM--SCGQGVQD-DSDDEVDWGNDEXXXXXDRPDFPGLHTLLSEAIASLGGAVFPKLNWSCPKDAAWVN-GGSLKCSLPGDVLCLLKSSTFISHDLGHAFDACTDATISRPGTFTLVLRKWCNLHPSMLFRCFVRERRLVGVCQRDCTSYYGFLAEEADRLSELLEDFFAAEVCEKFPDPGCVADVYVDNRSRVWLLDVNPLSAVTDSLLFDWSE 924
++ VL CQ S W PLF+ CT RS+VL LP+DV YL +DG ++ G SC Q +D D + +V W +DE P+FP + EAI SLGG VFPKLNWS P+DAAW+ GSLKC+ D+ LLKSS FI+HDL F CTD + LVLRKWC L P FRCFV+E +L+GV QRD T YY + + + + DFF +V KFPD V D+Y D++ RVW++D NP VT+SLLF W E
Sbjct: 3 KEQVLRCQLSVWFPLFRQCTIRSIVLPLPQDVTDYLLDDGTLVVSGRNEAPSCSQTNEDSDEEQDVQWSDDENVTTLTAPEFPDFAAQVQEAINSLGGIVFPKLNWSAPRDAAWIAMNGSLKCNNLSDIFLLLKSSDFITHDLTQPFLHCTDDSPDPKIDTQLVLRKWCELIPGGEFRCFVKENKLIGVTQRDHTQYYDHVCRQEATILGSIVDFFKDKVQYKFPDEDFVFDIYRDSQGRVWIIDFNPFGKVTNSLLFTWEE 264
BLAST of mRNA_C-linearis_contig104.922.1 vs. uniprot
Match: A0A673TAY1_SURSU (Cell division cycle protein 123 homolog n=4 Tax=Suricata suricatta TaxID=37032 RepID=A0A673TAY1_SURSU) HSP 1 Score: 249 bits (635), Expect = 8.750e-72 Identity = 122/261 (46.74%), Postives = 161/261 (61.69%), Query Frame = 1 Query: 151 EKHVLNCQFSQWQPLFKHCTPRSVVLDLPEDVARYLQEDGVVLPKGFE--MSCGQGVQDDSDDEVDWGNDEXXXXXDRPDFPGLHTLLSEAIASLGGAVFPKLNWSCPKDAAWVN-GGSLKCSLPGDVLCLLKSSTFISHDLGHAFDACTDATISRPGTFTLVLRKWCNLHPSMLFRCFVRERRLVGVCQRDCTSYYGFLAEEADRLSELLEDFFAAEVCEKFPDPGCVADVYVDNRSRVWLLDVNPLSAVTDSLLFDWSE 924
++HVL+CQFS W PLF+ T +SV+L LP++V YL +DG ++ G E +C Q DD +E+ W +DE P+FP T + EAI SLGG+VFPKLNWS P+DA W+ SLKC D+ L KSS FI+ D F CTD + + LVLRKWC L P FRCFV+E +L+GV QRD T YY ++++ + + ++DFF + KF D V DVY D+R +VWL+D NP VTDSLLF W E
Sbjct: 174 KEHVLHCQFSAWYPLFRSLTIKSVILPLPQNVKDYLLDDGTLVVSGREDPPTCSQPDSDDEAEEIQWSDDENTATLTAPEFPEFTTKVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKTLSDIFLLFKSSDFITRDFTQPFIHCTDDSPDPCIEYELVLRKWCELIPGAEFRCFVKENKLIGVSQRDYTQYYDHISKQKEEICRCIQDFFTKHIQYKFLDEDFVFDVYRDSRGKVWLIDFNPFGEVTDSLLFTWEE 434
BLAST of mRNA_C-linearis_contig104.922.1 vs. uniprot
Match: G3SL65_LOXAF (Cell division cycle protein 123 homolog n=6 Tax=Eutheria TaxID=9347 RepID=G3SL65_LOXAF) HSP 1 Score: 243 bits (619), Expect = 1.700e-71 Identity = 120/261 (45.98%), Postives = 159/261 (60.92%), Query Frame = 1 Query: 151 EKHVLNCQFSQWQPLFKHCTPRSVVLDLPEDVARYLQEDGVVLPKGFE--MSCGQGVQDDSDDEVDWGNDEXXXXXDRPDFPGLHTLLSEAIASLGGAVFPKLNWSCPKDAAWVN-GGSLKCSLPGDVLCLLKSSTFISHDLGHAFDACTDATISRPGTFTLVLRKWCNLHPSMLFRCFVRERRLVGVCQRDCTSYYGFLAEEADRLSELLEDFFAAEVCEKFPDPGCVADVYVDNRSRVWLLDVNPLSAVTDSLLFDWSE 924
++HVL+CQFS W PLF+ T +SV+L LP++V YL +DG ++ G E + Q DD +E+ W +DE P+FP T + EAI SLGG+VFPKLNWS P+DA W+ SLKC D+ L KSS FI+ D F CTD T F LVLRKWC L P FRCFV+E +L+G+ QRD T YY ++++ + + ++ FF + KF D V D+Y D+R +VWL+D NP VTDSLLF W E
Sbjct: 3 KEHVLHCQFSAWYPLFRSLTIKSVILPLPQNVKDYLLDDGTLVVSGREDPPTRSQPDSDDEAEEIQWSDDENTATLTAPEFPEFTTKVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKTLSDIFLLFKSSDFITRDFTEPFMHCTDDTPDPCMEFELVLRKWCELIPGAEFRCFVKENKLIGISQRDYTQYYDHISKQKEEICRSIQAFFKKHIQYKFLDEDFVFDIYRDSRGKVWLIDFNPFGEVTDSLLFTWEE 263
BLAST of mRNA_C-linearis_contig104.922.1 vs. uniprot
Match: CD123_RAT (Cell division cycle protein 123 homolog n=30 Tax=Tetrapoda TaxID=32523 RepID=CD123_RAT) HSP 1 Score: 243 bits (619), Expect = 1.700e-71 Identity = 118/261 (45.21%), Postives = 159/261 (60.92%), Query Frame = 1 Query: 151 EKHVLNCQFSQWQPLFKHCTPRSVVLDLPEDVARYLQEDGVVLPKGFE--MSCGQGVQDDSDDEVDWGNDEXXXXXDRPDFPGLHTLLSEAIASLGGAVFPKLNWSCPKDAAWVN-GGSLKCSLPGDVLCLLKSSTFISHDLGHAFDACTDATISRPGTFTLVLRKWCNLHPSMLFRCFVRERRLVGVCQRDCTSYYGFLAEEADRLSELLEDFFAAEVCEKFPDPGCVADVYVDNRSRVWLLDVNPLSAVTDSLLFDWSE 924
++HV +CQFS W PLF+ T +SV+L LP++V YL +DG ++ G E +C Q D +E W +DE P+FP +T + EAI SLGG+VFPKLNWS P+DA W+ SLKC D+ L KSS FI+HD F C D + + LVLRKWC L P FRCFV+E +L+G+ QRD T YY ++++ + + ++DFF + KF D V D+Y D+R +VWL+D NP VTDSLLF W E
Sbjct: 3 KEHVSHCQFSAWYPLFRSLTIKSVILPLPQNVKDYLLDDGTLVVSGREDPPTCSQPDSGDEAEETQWSDDESTATLTAPEFPEFNTQVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKSLSDIFLLFKSSDFITHDFTQPFIHCNDDSPDPCIEYELVLRKWCELIPGAEFRCFVKENKLIGISQRDYTQYYDHISKQKEEICRCIQDFFKEHLQYKFLDEDFVFDIYRDSRGKVWLIDFNPFGEVTDSLLFTWEE 263 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.922.1 >prot_C-linearis_contig104.922.1 ID=prot_C-linearis_contig104.922.1|Name=mRNA_C-linearis_contig104.922.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=456bp MVPNVGADDKHEASVEEEVPAAPPAEAVAADTPVQTPAPTEKHVLNCQFSback to top mRNA from alignment at C-linearis_contig104:526766..532711- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.922.1 ID=mRNA_C-linearis_contig104.922.1|Name=mRNA_C-linearis_contig104.922.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5946bp|location=Sequence derived from alignment at C-linearis_contig104:526766..532711- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:526766..532711- >mRNA_C-linearis_contig104.922.1 ID=mRNA_C-linearis_contig104.922.1|Name=mRNA_C-linearis_contig104.922.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2736bp|location=Sequence derived from alignment at C-linearis_contig104:526766..532711- (Chordaria linearis ClinC8C monoicous)back to top |