mRNA_C-linearis_contig104.916.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.916.1 vs. uniprot
Match: D8LE65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE65_ECTSI) HSP 1 Score: 321 bits (822), Expect = 2.030e-105 Identity = 260/335 (77.61%), Postives = 281/335 (83.88%), Query Frame = 1 Query: 22 LSVSGIARHLIAATLALDRSNGIRAAAEQPSGSAGPGPRDIPFVGSAGDQQQEELVFEDLPEGFHDDVDSITLAVGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSTPSDDIFVQVSAGDRHTCGIKIDQTVSCWGHMRSSPRGLXXXXXXXXXXXXXXXXXXXXXXXXDDLAGSTSGVPKNTIYVQVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRAGPWHQQVTCGQWTTCGIRAGDXXXXXXGMSKLKKSHASFEELSSGDHHTCAVDEDGDVECWGDAMQAEMVPDGFQAA 1026
LS S + R L+A L +DRS +RAAAE SG RD G A + Q E+VFEDLPEGFHDD+DSIT+AVGGHHTCALEYRPGVDFGGPVRCWGR+DWGQS PSDDIFVQVSAG+RHTCGIKIDQTVSCWGHM SPRG XXXXXXXXXXXXXXXXXXXXXXDD+AGSTSGVP NT +VQVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FR GPW+Q VTCGQWTTCGIR D G+ L K+ A +EE+SS D HTCAVDE+G+VECWGDA+QAE+VPDGFQAA
Sbjct: 2 LSCSAVVRILVACVLVVDRSLEVRAAAEPSSGGDR---RDTTLAGLAAETQ--EVVFEDLPEGFHDDIDSITVAVGGHHTCALEYRPGVDFGGPVRCWGRDDWGQSMPSDDIFVQVSAGNRHTCGIKIDQTVSCWGHMPFSPRGFFQXXXXXXXXXXXXXXXXXXXXXXDDIAGSTSGVPANTTFVQVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETQFRRGPWYQ-VTCGQWTTCGIRKHDGGVECWGVKTLNKTGAFYEEVSSADFHTCAVDENGEVECWGDALQAELVPDGFQAA 330
BLAST of mRNA_C-linearis_contig104.916.1 vs. uniprot
Match: A0A7S1UCR5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCR5_9STRA) HSP 1 Score: 109 bits (272), Expect = 9.280e-24 Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = 1 Query: 175 QEELVFEDLPEGFHDDVDSITLAVGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSTPSDDIFVQVSAGDRHTCGIKIDQTVSCWGHMRSSPR 450
Q + F +LPEGFH D+D ++++VG +H CA+EY GGP+RCWG N GQS P F+QVSAG HTC + +DQT+ CWG + R
Sbjct: 22 QPDGTFTELPEGFHADLDEVSVSVGEYHACAIEYDETQPMGGPLRCWGGNTEGQSDPPGGTFMQVSAGAMHTCALSVDQTIECWGRVEPHDR 113
BLAST of mRNA_C-linearis_contig104.916.1 vs. uniprot
Match: A0A7S2SKA4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKA4_9STRA) HSP 1 Score: 107 bits (267), Expect = 4.620e-23 Identity = 45/82 (54.88%), Postives = 60/82 (73.17%), Query Frame = 1 Query: 190 FEDLPEGFHDDVDSITLAVGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSTPSDDIFVQVSAGDRHTCGIKIDQTVSCWGHM 435
F+ L EGF+ D+D + G HTCALE RP V+FGG VRCWG N+ GQ++P +F+QVS+G TCGI++D+TV+CWG M
Sbjct: 34 FDRLEEGFYADLDGTAASAGFFHTCALEMRPSVEFGGVVRCWGFNEHGQASPPPGVFIQVSSGHLFTCGIRMDETVACWGAM 115
BLAST of mRNA_C-linearis_contig104.916.1 vs. uniprot
Match: W4H5W5_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H5W5_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.860e-17 Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1 Query: 214 HDDVDSITLAVGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSTPSDDIFVQVSAGDRHTCGIKIDQTVSCWGHMR--SSPRGL 456
H D+D T++ G H+CA+ VDFGG V CWG N +GQS+P D F+QVS+G HTCG+ +D+TV CWG SP GL
Sbjct: 109 HLDIDDTTVSAGIEHSCAIHSVSTVDFGGKVVCWGDNTFGQSSPPDVEFIQVSSGRFHTCGVTLDETVECWGDANHAQSPAGL 191
BLAST of mRNA_C-linearis_contig104.916.1 vs. uniprot
Match: A0A067D4P3_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D4P3_SAPPC) HSP 1 Score: 91.3 bits (225), Expect = 2.390e-17 Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 1 Query: 214 HDDVDSITLAVGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSTPSDDIFVQVSAGDRHTCGIKIDQTVSCWG 429
H D+D T++ G HTCA+ DFGG V CWG + GQ++P D F+QVS+G HTCG+K+D+TV+CWG
Sbjct: 27 HVDIDDTTVSAGISHTCAIHSVSAADFGGKVLCWGDDSMGQASPPDAEFIQVSSGRFHTCGVKLDETVACWG 98
BLAST of mRNA_C-linearis_contig104.916.1 vs. uniprot
Match: A0A1V9YN74_9STRA (Uncharacterized protein n=2 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YN74_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 2.530e-17 Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 1 Query: 166 DQQQEELVFEDLPEGFHDDVDSITLAVGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSTPSDDIFVQVSAGDRHTCGIKIDQTVSCWG 429
D+++ +F P H D+D T++ G HTCA+ DFGG V CWG + GQS+P D F+QVS G H+CG+K+D+TV CWG
Sbjct: 37 DEEESTPLFGRSPAIQHLDIDDTTVSAGIGHTCAIHSVSAADFGGKVLCWGEDMLGQSSPPDAEFIQVSCGRFHSCGVKLDETVECWG 124
BLAST of mRNA_C-linearis_contig104.916.1 vs. uniprot
Match: A0A225VBP5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VBP5_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.450e-15 Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 1 Query: 220 DVDSITLAVGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSTPSDDIFVQVSAGDRHTCGIKIDQTVSCWG 429
D+D ++A G H+CA+ + D GG V CWG N+ GQSTP F+QVS G H+CGI+ID+T+ CWG
Sbjct: 31 DIDETSIAAGIEHSCAIHTQSYEDVGGRVVCWGVNNGGQSTPPPGDFIQVSTGRLHSCGIRIDETLECWG 100
BLAST of mRNA_C-linearis_contig104.916.1 vs. uniprot
Match: A0A1W0A4G8_9STRA (Uncharacterized protein n=2 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4G8_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 1.460e-15 Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1 Query: 193 EDLPEGFHDDVDSITLAVGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSTPSDDIFVQVSAGDRHTCGIKIDQTVSCWG 429
ED+ E H D+D T++ G H+CA+ DFGG V CWG N GQ+ D F+QVS+G H+CG+K+D+T+ CWG
Sbjct: 23 EDVIE--HVDIDDTTVSAGIEHSCAIHSVSAADFGGKVICWGSNSMGQAEAPDAEFIQVSSGRFHSCGVKLDETIECWG 99
BLAST of mRNA_C-linearis_contig104.916.1 vs. uniprot
Match: D0NTR5_PHYIT (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0NTR5_PHYIT) HSP 1 Score: 84.3 bits (207), Expect = 7.730e-15 Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 1 Query: 151 VGSAGDQQQEELVFEDLPEGFHDDVDSITLAVGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSTPSDDIFVQVSAGDRHTCGIKIDQTVSCWG 429
VG A + + E D+ D+D ++A G H+CA++ + D GG V CWG N+ GQS+P F+QVS G H+CGI+ID+T+ CWG
Sbjct: 16 VGDADNTEDNEPTVPDIISPL--DIDETSIAAGIEHSCAIQTQSYEDVGGRVVCWGVNNGGQSSPPPGEFIQVSGGRLHSCGIRIDETLECWG 106
BLAST of mRNA_C-linearis_contig104.916.1 vs. uniprot
Match: H3GQG3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQG3_PHYRM) HSP 1 Score: 82.8 bits (203), Expect = 8.720e-15 Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1 Query: 220 DVDSITLAVGGHHTCALEYRPGVDFGGPVRCWGRNDWGQSTPSDDIFVQVSAGDRHTCGIKIDQTVSCWG 429
D+D ++A G H+CA++ + D GG V CWG N+ GQS+P F+QVS G H+CGI+ID+T+ CWG
Sbjct: 35 DIDETSIAAGIEHSCAIQTQSYEDVGGRVVCWGVNNGGQSSPPPGDFIQVSTGRLHSCGIRIDETLECWG 104 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.916.1 >prot_C-linearis_contig104.916.1 ID=prot_C-linearis_contig104.916.1|Name=mRNA_C-linearis_contig104.916.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=343bp MRNRRRALSVSGIARHLIAATLALDRSNGIRAAAEQPSGSAGPGPRDIPFback to top mRNA from alignment at C-linearis_contig104:494702..498084- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.916.1 ID=mRNA_C-linearis_contig104.916.1|Name=mRNA_C-linearis_contig104.916.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3383bp|location=Sequence derived from alignment at C-linearis_contig104:494702..498084- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:494702..498084- >mRNA_C-linearis_contig104.916.1 ID=mRNA_C-linearis_contig104.916.1|Name=mRNA_C-linearis_contig104.916.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2058bp|location=Sequence derived from alignment at C-linearis_contig104:494702..498084- (Chordaria linearis ClinC8C monoicous)back to top |