Homology
BLAST of mRNA_C-linearis_contig104.915.1 vs. uniprot
Match:
A0A6H5KAX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAX4_9PHAE)
HSP 1 Score: 369 bits (947), Expect = 3.650e-122
Identity = 183/232 (78.88%), Postives = 209/232 (90.09%), Query Frame = 1
Query: 76 LWLTKTCSFVTLPGIASRQR-TAALSTGSGMPMPPSPEELKARAAAIREELKELEASASVNRRPNAELAEPKRVVPFPETLLDSCWKVVLELRGVKSDKNRIPVRLVFCCKFAADDFILEVEGDHRFVKRGYVWEPDRNEEDDKEFITFIAQVEGLSAVPDGRIYMNAYIDTTKGDDGKTRYKFSDGAVTIKEVINKSFWGIFNTAGLLAEFKVVGTWDAFPIDALPDTPSS 768
LWLT T SF+ +P IA+R+R T L +G +PPSPE L+ARAAAIREELKELEA+A+ RRPNAELAEPKRVVPFPETLLDSCWK+V++LRGVKSDKNR+PVRLVFCCKFA +DFILEVE D+RFVKRGYVWEPDRN+++DKEFITFIA+VEGLSAVPDGRI+MN +ID +GDDGKTRYKFS+GAVTIKEVI+KSFWG+FNTAGLLAEFKVVGTWDA PIDALP+ SS
Sbjct: 11 LWLTPTHSFMAVPPIAARKRVTTQLHSGEDGRIPPSPETLRARAAAIREELKELEANAAATRRPNAELAEPKRVVPFPETLLDSCWKIVMDLRGVKSDKNRVPVRLVFCCKFAEEDFILEVESDNRFVKRGYVWEPDRNDDEDKEFITFIAEVEGLSAVPDGRIFMNGFIDKIEGDDGKTRYKFSEGAVTIKEVIDKSFWGVFNTAGLLAEFKVVGTWDASPIDALPEKQSS 242
BLAST of mRNA_C-linearis_contig104.915.1 vs. uniprot
Match:
A0A836CMB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB8_9STRA)
HSP 1 Score: 105 bits (263), Expect = 9.650e-23
Identity = 56/117 (47.86%), Postives = 79/117 (67.52%), Query Frame = 1
Query: 403 KFAADDFILEVEGDHRFVKRGYVWEPDRNEEDDKEFITFIAQVEGLSAVPDGRIYMNAYIDTTKGDDGKTRYKFSDGAVTIKEVINKSFWGIFNTAGLLAEFKVVGTWDAFPIDALP 753
+F++DD IL V + RGY+W PDR+ ++ +I F V+GLSAVPDG++Y+NA +D DD YK SDG +TIKEV N+ +G+F+ AG+LAEFKVVG + A P+ +P
Sbjct: 71 RFSSDDNILLVSAGTPAITRGYIWAPDRDA--NRTYIAFDIGVKGLSAVPDGKLYLNARVDQ---DDATGGYKLSDGVLTIKEVDNRRGFGLFSFAGILAEFKVVGEFVATPLREMP 182
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.915.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 3.65e-122 / Id = 78.88 Expect = 9.65e-23 / Id = 47.86 Sequence A0A6H5KAX4_9PHAE A0A836CMB8_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category signal peptide Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-00_001100.1 Exons 4 Model size 1738 Cds size 744 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927389.4067106-UTR-C-linearis_contig104:491329..491374 1622927389.4067106-UTR-C-linearis_contig104:491329..491374 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 491330..491374 + 1690879671.4072013-UTR-C-linearis_contig104:491329..491374 1690879671.4072013-UTR-C-linearis_contig104:491329..491374 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 491330..491374 + 1622927389.4702964-UTR-C-linearis_contig104:493647..494596 1622927389.4702964-UTR-C-linearis_contig104:493647..494596 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 493648..494596 + 1690879671.4525123-UTR-C-linearis_contig104:493647..494596 1690879671.4525123-UTR-C-linearis_contig104:493647..494596 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 493648..494596 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927389.4189944-CDS-C-linearis_contig104:491374..491620 1622927389.4189944-CDS-C-linearis_contig104:491374..491620 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 491375..491620 + 1690879671.4162273-CDS-C-linearis_contig104:491374..491620 1690879671.4162273-CDS-C-linearis_contig104:491374..491620 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 491375..491620 + 1622927389.4295688-CDS-C-linearis_contig104:492239..492409 1622927389.4295688-CDS-C-linearis_contig104:492239..492409 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 492240..492409 + 1690879671.424353-CDS-C-linearis_contig104:492239..492409 1690879671.424353-CDS-C-linearis_contig104:492239..492409 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 492240..492409 + 1622927389.4388442-CDS-C-linearis_contig104:492607..492741 1622927389.4388442-CDS-C-linearis_contig104:492607..492741 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 492608..492741 + 1690879671.4328558-CDS-C-linearis_contig104:492607..492741 1690879671.4328558-CDS-C-linearis_contig104:492607..492741 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 492608..492741 + 1622927389.4494247-CDS-C-linearis_contig104:493453..493647 1622927389.4494247-CDS-C-linearis_contig104:493453..493647 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 493454..493647 + 1690879671.442147-CDS-C-linearis_contig104:493453..493647 1690879671.442147-CDS-C-linearis_contig104:493453..493647 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 493454..493647 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.915.1
>prot_C-linearis_contig104.915.1 ID=prot_C-linearis_contig104.915.1|Name=mRNA_C-linearis_contig104.915.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=248bp
MRVAWVAWSTLWLTKTCSFVTLPGIASRQRTAALSTGSGMPMPPSPEELK back to top mRNA from alignment at C-linearis_contig104:491330..494596+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.915.1 ID=mRNA_C-linearis_contig104.915.1|Name=mRNA_C-linearis_contig104.915.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3267bp|location=Sequence derived from alignment at C-linearis_contig104:491330..494596+ (Chordaria linearis ClinC8C monoicous)TCTTCCTTGGCCCTTCTCGGCCCCTGTGCCTTTTTGTCTGCTACC ATGAG
GGTGGCTTGGGTTGCGTGGTCAACGCTATGGCTGACGAAGACCTGCTCCT
TCGTCACTTTACCTGGCATTGCTTCGCGGCAACGCACCGCCGCATTGTCC
ACGGGTTCAGGGATGCCGATGCCTCCGTCCCCTGAGGAGCTGAAAGCAAG
AGCCGCGGCGATCCGCGAGGAGCTCAAGGAATTAGAGGCCAGTGCGTCCG
TGAATAGGCGACCAAACGCTGAGCTGGCTGAGCCGAAACGG GTGAGAGCA
AAAGCTTGCGCAACAGTAAGCTCAGGTTTGTACAACCTCATGTGGCCAGC
GCTCAGGCCTGACGTGACGAACGTCACCAGAAGACATGTTCGGCATCAGC
CATGCAAGAACTTTGCCTTTTGTGTGTCCTTCCTGCTTGCTACGCGTGTT
CGGCTCAGATCCTTGCTTGCATACACGACAATTTTTTTCATAATGCATTT
ATGGTGTTCGCGGGGACGAATCGCCACACACAGGTTTTTACATTTCTGGC
ACGAGAGGGGAAACGTAAAAAGTAAAAAAAACAACACTTTACACGTACTG
GGCCGGATTTGAGTTCAGATCTGTGCGTCTCGCCGCGGGGCTGTATTCGA
TCGTTTACGCTTCTTAGTCGATTCCTCGCCCTTGAAACGAGAGCGCTCCA
AGTTGAAACTATAGTTTCCCATTTCCCCTCCATCTGCGTGTGCCTTGTCG
TCCAGGCGTCGTGTCCGGCAACACGAAGGTATGGTATAAACTCTCTCCCT
ACCGGGCAGCGCGCTCTTTACAGCCGTCTCACATGATGACCGCGTCGGAA
AGCATCCACGAAAGAGTACTCAAATCAAACCAAACCAAACCGGCCCCCCG
ATCAAATCAGGTGGTGCCATTTCCCGAGACGCTGCTGGATAGCTGCTGGA
AGGTTGTGCTGGAGCTTCGCGGCGTGAAGAGCGACAAGAACCGGATACCC
GTCCGCCTCGTCTTCTGCTGCAAGTTCGCCGCGGACGACTTCATCCTGGA
AGTGGAGGGAGACCATCGTTTCGTCAAACG GTGAGCTTAAGCTACGAGCG
CGGCAAAGCATAGGCCACGCCCCCTGTACTACTACGTCTCGCCGGCGGCC
GGCCACTCTTACAACTACGGGTAAGGCTCGGTGCTCGATTAATATGTACC
TAGCCCTCCTTGGAGGTCCGACAAGCAAAGACGACGCTTGCCCCCGCACA
TCCCCGTTGCTGCTTGCTGAAAAAAAAGGGGCTACGTGTGGGAGCCTGAC
CGGAACGAGGAGGACGACAAGGAGTTCATCACGTTCATCGCGCAGGTGGA
GGGGCTGTCGGCGGTGCCTGACGGGAGGATATACATGAACGCCTACATCG
ACACCACCAAGG GTGAGAAAAGGGCAAGGAAGTCTTCGTCTTCCCTACAA
GATTACATCCTTCATTAAGATGGATGCATGTGTGTAGTTGCTGTCCTACC
TATACAGCATATGATATGTAGAACGAATGCCGGCGTGGAGCATTCGAGGT
GCTTTGCCTCCCGCGGTTTTTGGCTGGATTGGTTGTTGGCATGAGCGCTT
TACGGGGCATTCCGTATTGTCACGCGGGTGACTCTTCTTTTCGCCGCGCG
AGCGTCGAAGCTTGCTCGATTGCTTGTACATACGCTAGTGACGCAGTGTG
GTTTGGTGTCTCGTGGCGTAGGCCATGTCAGTGCGCCCCGACCGAACGCG
CCGACAGAAAACAGGGCCGACTGCCTCTGCGTGACACGCACGCTGCGCGA
CACGCACGCTGCCCGTTTGCCTTTGCCGAGGACGCGTCACGCTTGGTGGA
TACTTTCTTCGCTTTGTCGGCCCATCAGGGAGAGAAGCGCAAATGGCTTT
TTGTGTCGCCAAGGCTTTTCGATTTTGTGCGCACCTCTCTCTCCATCTGC
CTCCGGTGTGTTGCGGCGGTGGTTGTGGCGCACACAGGCTCACTATAATA
GTACGTCGAGCCTTGTCCGAGCTAATTTGGAGAAGCAATGCTCAACACAG
ATACGAAGTAGATGTGTTCTCGCACGCGTTTCCCCTGCTTCCATCGCCGA
CCTCCCTCCCTCTCTCCCCCACAGGAGACGACGGCAAGACCCGGTACAAA
TTTAGCGACGGGGCCGTGACTATCAAGGAGGTCATCAACAAGTCGTTCTG
GGGGATATTCAACACGGCGGGTCTGCTGGCCGAGTTCAAGGTCGTGGGGA
CGTGGGACGCTTTCCCGATAGACGCGTTGCCCGACACGCCGTCGTCCAAC
ACCCCCTCGTCGGAGTAG AAAAAATTGGGCGTCGGGATAAGGCTGGCGTT
CGTCACTCTTTGTAAATTGTCTTGTTTTTAGGGGAAACAATGGTTTTAGG
AAAAACATCGTCGCGGGGGGGGAAGAAGTGCCTCCGCGTTCGTTGGCTTT
GGATGCTCTGGGCACTTGTGTGGTTTTATGAACGAACGCCGTAACAGGAG
ACCTGGTTCGATTTGAACGCCGTCGGGGCCGCAGATTGACGGAGTGCTGC
GGCTAGATTACGTTGCTGTTGGTGTGGGAGGGACAGAGTATCAGCAGGTC
ACTAAATAGGTCGTGTGGGGTAACGTGTAGCTCTTGTACATCTGACGCAA
GGAGATCGGGTTTTGTCTCTTTTAGAGGAGTGGTGTTGACGGTATGAAGC
AGCCCGCGAGCTCTTTGTCTCGGGGGGGAGGGAACGAAGGTGTTATATCA
GTAGAAGGGCACTCTTGAAATTGGCGACCAGGTCCCTTGTTATCGTTGAA
CTTTGTGTGTCTTTTGTGTTTCGTTTTGGTCGTGGCGAATGTATCTGGAG
ACTAGACCGTTTAAAACGGTTCCTGGATGTCGTAGGAAGGGCGAAATGGT
TCGTTGAAACACAGGGAAAATCAAGGAACTGCTGTCATCGTAGAAAAGCT
CGTGCGCGTGCCAACGACTTGGTTGAGCGGTCAAGAGGGTTCTGTTTCTT
TGTGGGTGCGCCCGATATGTTCGTGCTGTCGGCTGGATGAAATTACAGAT
TGTTTTAGACCGAAGTCGGTGCCTAGCCCTCCCATGCCCGAACATGGTAG
TTGACCCCCGTCATAGCCTCATAATGGACGGAGCAGGATTTTTGGGAGGA
TAGAACTTGGCTTGTAGAAAAGGGGCGGTACGTTTTTCTGATAAGGACAC
TCAATAACATCACCCCAACGCGCTTGCTTTCTTGAATTCTGAACCACCGC
CGTTCAGACCAACAAAT back to top Coding sequence (CDS) from alignment at C-linearis_contig104:491330..494596+
>mRNA_C-linearis_contig104.915.1 ID=mRNA_C-linearis_contig104.915.1|Name=mRNA_C-linearis_contig104.915.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at C-linearis_contig104:491330..494596+ (Chordaria linearis ClinC8C monoicous) back to top