mRNA_C-linearis_contig104.911.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: D8LEF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF6_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.620e-46
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 1

Query:    4 MGYNELGNDWQHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRKRNTRK 249
            MGY +LGNDWQHSLVLATGSADGSIHVFDLSKGQGDE+QTL GHRDRVYSADFHPTEPKLVS SADKTV IWEPNRKRN+RK
Sbjct:    1 MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 82

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BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.280e-41
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 1

Query:    4 MGYNELGNDWQHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRKRNTRK 249
            MGY +LGNDWQHSLVLATGSADGSIHVFDLSKGQGDE+QTLRGHRDRVYS DFHPTEPKLVS SADKTV IWEPNRKRN+RK
Sbjct:  520 MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLRGHRDRVYSTDFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 601

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BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A835Z281_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z281_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.420e-32
Identity = 57/85 (67.06%), Postives = 71/85 (83.53%), Query Frame = 1

Query:    1 GMGYNELGNDWQHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNR--KRNTRK 249
            G+GY + G DW HSLVLATGSADG+I+ FD+SKG+G ++QTLRGH DRVY+  FHPTEP+LVS SAD+TVRIW P++  +RN RK
Sbjct:   40 GIGYEDSGKDWAHSLVLATGSADGNIYTFDMSKGEGGDLQTLRGHNDRVYAVHFHPTEPRLVSGSADQTVRIWGPSKGGRRNGRK 124

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BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A8J4PPE8_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PPE8_9MYCE)

HSP 1 Score: 89.7 bits (221), Expect = 1.650e-15
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1

Query:   25 NDWQHSLVLATGSADGSIHVFD--LSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRK 234
            ND   S++LATGS+D + ++FD  LSK  G  +Q L GH DRVYS  FHP+EP L SCSAD T+R+W P +K
Sbjct:  446 NDINQSVLLATGSSDYNAYIFDIGLSKQSGRLLQKLEGHTDRVYSVKFHPSEPILASCSADSTIRLWTPKKK 517

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BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A8H7Q4N1_MORIS (GED domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q4N1_MORIS)

HSP 1 Score: 88.2 bits (217), Expect = 4.810e-15
Identity = 34/75 (45.33%), Postives = 54/75 (72.00%), Query Frame = 1

Query:   34 QHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRKRNTRK*VV 258
            + S++LATGS+D  ++++++ +   + MQ L GH DRVY+A+FHPTEP L SCSAD T+++W P   R  +K ++
Sbjct:  422 EKSVLLATGSSDPYVYLYNIGENTAELMQRLEGHTDRVYAANFHPTEPILASCSADYTIKVWGPGAPRGKKKGII 496

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BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: R7QRT1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRT1_CHOCR)

HSP 1 Score: 88.2 bits (217), Expect = 5.720e-15
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 1

Query:   19 LGNDWQHSLVLATGSADGSIHVFDLS--KGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNR 231
            +G   Q+SL+LA+GSADG+I +FD+    G G  +QTL GH+DRVY  DFHP EP L SCSAD  ++IW+  R
Sbjct:  482 IGGPIQNSLILASGSADGNICLFDVGGRPGTGALLQTLEGHKDRVYGVDFHPNEPILASCSADCGIKIWQSFR 554

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BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A2V3IL28_9FLOR (WD repeat-containing protein 5B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL28_9FLOR)

HSP 1 Score: 85.9 bits (211), Expect = 3.220e-14
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 1

Query:   19 LGNDWQHSLVLATGSADGSIHVFDL--SKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIW 219
            +G+  + SLVLA+GSADG+++VFD+  S G G  +QTL GH+D  YS DFHP EP L SCSAD  + IW
Sbjct:  484 IGDAIESSLVLASGSADGNVYVFDVGGSAGTGTLVQTLIGHKDIAYSVDFHPCEPILASCSADSKINIW 552

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BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A168T094_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168T094_ABSGL)

HSP 1 Score: 80.5 bits (197), Expect = 1.590e-12
Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = 1

Query:   34 QHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRK 234
            + S++LATGSAD  ++++++ + + + MQ + GH DRVYS +FHPTEP L S SAD TV+IW P+ K
Sbjct:  439 EKSVLLATGSADPYVYLYNVGEDRSELMQRMEGHTDRVYSVNFHPTEPILASGSADFTVKIWGPSFK 505

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BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: T0QW05_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QW05_SAPDV)

HSP 1 Score: 77.4 bits (189), Expect = 1.500e-11
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 1

Query:    4 MGYN--ELGNDWQHSLVLATGSADGSIHVFDLS-------KGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRKR 237
            +GY   EL       ++LATGSAD +I++ D++        G    +Q L GH DRVYS DFHP+EP L S SAD TV+IW P   R
Sbjct:  407 LGYQDRELQEKPDEVMLLATGSADNTIYLHDVTCRRGYGLNGSTSLLQRLEGHTDRVYSVDFHPSEPILASASADFTVKIWLPRTSR 493

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BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A433D2F6_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433D2F6_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 4.410e-11
Identity = 33/69 (47.83%), Postives = 41/69 (59.42%), Query Frame = 1

Query:   34 QHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRKRN 240
            Q   V + G     I  F  ++   + MQ L GH DRVY+  FHPTEP L SCSAD TV+IW P +K+N
Sbjct:  127 QRGRVFSLGGGTNQIK-FTPNQNSAELMQRLEGHTDRVYAVHFHPTEPILASCSADFTVKIWGPTKKKN 194

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot

BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
D8LEF6_ECTSI	1.620e-46	91.46	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KNQ7_9PHAE	1.280e-41	91.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835Z281_9STRA	1.420e-32	67.06	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A8J4PPE8_9MYCE	1.650e-15	55.56	Uncharacterized protein n=1 Tax=Polysphondylium vi...	[more]
A0A8H7Q4N1_MORIS	4.810e-15	45.33	GED domain-containing protein n=1 Tax=Mortierella ...	[more]
R7QRT1_CHOCR	5.720e-15	54.79	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]
A0A2V3IL28_9FLOR	3.220e-14	56.52	WD repeat-containing protein 5B n=1 Tax=Gracilario...	[more]
A0A168T094_ABSGL	1.590e-12	50.75	Uncharacterized protein n=1 Tax=Absidia glauca Tax...	[more]
T0QW05_SAPDV	1.500e-11	45.98	Uncharacterized protein n=2 Tax=Saprolegnia TaxID=...	[more]
A0A433D2F6_9FUNG	4.410e-11	47.83	Uncharacterized protein n=1 Tax=Jimgerdemannia fla...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	87.0
Seed ortholog evalue	4.4e-15
Seed eggNOG ortholog	5786.XP_003291002.1
KEGG ko	ko:K14963
KEGG Pathway	ko04934,map04934
Hectar predicted targeting category	other localisation
EggNOG free text desc.	WD domain, G-beta repeat
EggNOG OGs	3XD7W@554915,KOG0266@1,KOG0266@2759
Ec32 ortholog description	WD40 repeat
Ec32 ortholog	Ec-00_002100.1
COG Functional cat.	S
Best tax level	Amoebozoa
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036
Exons	2
Model size	1399
Cds size	249
Stop	1
Start	1

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig104:455451..457389+
coding sequence from alignment at C-linearis_contig104:455451..457389+

protein sequence of mRNA_C-linearis_contig104.911.1

>prot_C-linearis_contig104.911.1 ID=prot_C-linearis_contig104.911.1|Name=mRNA_C-linearis_contig104.911.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=83bp
MGYNELGNDWQHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYS
ADFHPTEPKLVSCSADKTVRIWEPNRKRNTRK*

mRNA from alignment at C-linearis_contig104:455451..457389+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig104.911.1 ID=mRNA_C-linearis_contig104.911.1|Name=mRNA_C-linearis_contig104.911.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1939bp|location=Sequence derived from alignment at C-linearis_contig104:455451..457389+ (Chordaria linearis ClinC8C monoicous)
GGGATGGGATACAACGAGCTCGGGAACGACTGGCAGCACTCGTTGGTGTT
GGCCACGGGCAGCGCGGACGGCAGCATTCACGTCTTCGACCTCTCCAAAG
GGCAGGTCAGTCGTTTTGTTTTATTCTTCTCGTAGCGTCGCTCAGCTCTG
GGGTACCGGGGTTTTGTCCTCCTCCCTCTGTTTTTCGTTTTTTTCTCTTC
TATGTAGGCTTGGAGGCCGGGCGGGCGGGGCATACAGAAGAGGGAGACAC
GGCGCTCGTTTTCGCCTCTCACCTTTCTCTCATTGGCTCGCTCTGGATGG
ATCCACAGTCTCACGTTCAGGGTGTCAGGCTGTGGGACGGCAGGCACGGG
AGAGGTGGGTGCTGGAAGCGACAGCGATCCTGTCCCGTCCCGGCGTGCCC
CGGCGTGCCCCGGCGTGCCCCGGCCTGTCCCGCCTTGTTCTCTTCCATAG
CACTCATTTTTCCCTGAATTCTCTGACAGCGCATTCTCTTCTTGCCCACC
TCCTCCTGCACCTTCTCACCGACGCTACCGTTCCTGCCCCATCCGCGCGT
CTTCTCGCGCTGACCCGCCCCGCCCCGTCTTGCAATGGCGACGGCCACCG
ACAACTGACAACTGACAACCATGGTGTGGGGGTGCCGGCCAACAGGGAGA
CGAGATGCAGACGCTGCGCGGGCATCGAGACCGGGTGTACTCCGCCGACT
TCCACCCCACGGAACCGAAGCTCGTTTCCTGCAGCGCGGACAAGACGGTG
CGGATATGGGAGCCCAACAGGAAGAGGAACACGCGGAAGTAGGTAGTAAA
CGGTCGCGGTGTCTGGTGTCTGGTGGACACGGAAGGGCAAAGAGAAGCTG
GTATCACGTGTGTGTAAGATATCTGTGTTGTGTGTGTAGTTCGTATGTGT
GTAAAGTATGTTCTTGTCGAAGGTTTTTGTTGGGTCAGTCAGCCTCTTAT
CGCCGACCACCGCCGTATGATGTTTGTGAAAGCCGGATTGCTCGTGGCGG
GATATCTATCCTGTGCGCGATCTGTCGCTCAAAGAAGGTGGGTACCCACA
ATCCAGCCTAAAACCACACACAAGGCGAAGCACGGGGCAGTATGGGGTGG
AGGGAAGAAATGATTTCTGATGTAGGATCGCTGTTTTTCTCTCATGCACA
ACGCGACCTGCGTACCGCTCTGCTGCCGGCGTAAAGATATTAGACTATTG
AAGCTGGTGGTATAAAAGACTAGTAGTTATTTGTAGGTTAAGGCCCGGGT
GCCGATTTTGTCCGCGATTTGTAGAAGGAGGGACACACGAGGGAGGTCGT
TGTGGTTAAAAACGTGAGCGAGAGTTTCCCTGTAGTCTGTCTGGCCTGGC
AGGCAATCCTCGGAGTGAGAGAAGCAGGAGGGCGAAGGAGTGAGACCTGG
TGAGGCATGCATGGCGAGGCGTTGCTCCTCCCTCGTCAGAGCGGCAGGGG
TGTGCAGAGTGGGGGGAGAAGTTGTTGTGAGACGTTTTTTGTGGGAGACG
TTCCGTGTGTTTTTGTTTCCGTCGAGACCGTTTTTGCTGTCTAAAGTGTA
GCAGCAACGACTGCTGTTGTTTTGTTGCTTTTCTTTCCGACTTCAGCCCT
TGTTTGTCAGCAGAGTTTTCTTGCGCGTTTTTTGGAAGAGGTATGATGCG
GGAAGCCGAAAGGAAAGGTTGGTGGTGGCCGCGTCGACGAACAAGGCGAA
GGTCCTTTTTTGGATTCGTTGCGTCGCCGGCCCTGATTGTAAATTTTGAT
TTTGGTTGAGATAAGTTGCTGTTTTTTGAAAAACATTTCGCGACTTGTAG
CTACAGTAGGGCTGCTTGCTGACGCAAATACGTAATACTCCGACGAAGAA
TGCGTGGGTTCACTGGTTGTGTTCATTCTTGCGAGACTCGGTCGACTAAA
TAGATCAAGACCTCGTGTTGCAACTCTCGTGGCGCCCCC

Coding sequence (CDS) from alignment at C-linearis_contig104:455451..457389+

>mRNA_C-linearis_contig104.911.1 ID=mRNA_C-linearis_contig104.911.1|Name=mRNA_C-linearis_contig104.911.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at C-linearis_contig104:455451..457389+ (Chordaria linearis ClinC8C monoicous)
ATGGGATACAACGAGCTCGGGAACGACTGGCAGCACTCGTTGGTGTTGGC
CACGGGCAGCGCGGACGGCAGCATTCACGTCTTCGACCTCTCCAAAGGGC
AGATGGGATACAACGAGCTCGGGAACGACTGGCAGCACTCGTTGGTGTTG
GCCACGGGCAGCGCGGACGGCAGCATTCACGTCTTCGACCTCTCCAAAGG
GCAGGGAGACGAGATGCAGACGCTGCGCGGGCATCGAGACCGGGTGTACT
CCGCCGACTTCCACCCCACGGAACCGAAGCTCGTTTCCTGCAGCGCGGAC
AAGACGGTGCGGATATGGGAGCCCAACAGGAAGAGGAACACGCGGAAGTA
GGGAGACGAGATGCAGACGCTGCGCGGGCATCGAGACCGGGTGTACTCCG
CCGACTTCCACCCCACGGAACCGAAGCTCGTTTCCTGCAGCGCGGACAAG
ACGGTGCGGATATGGGAGCCCAACAGGAAGAGGAACACGCGGAAGTAG