mRNA_C-linearis_contig104.911.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: D8LEF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF6_ECTSI) HSP 1 Score: 165 bits (417), Expect = 1.620e-46 Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 1 Query: 4 MGYNELGNDWQHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRKRNTRK 249
MGY +LGNDWQHSLVLATGSADGSIHVFDLSKGQGDE+QTL GHRDRVYSADFHPTEPKLVS SADKTV IWEPNRKRN+RK
Sbjct: 1 MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 82
BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE) HSP 1 Score: 166 bits (420), Expect = 1.280e-41 Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 1 Query: 4 MGYNELGNDWQHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRKRNTRK 249
MGY +LGNDWQHSLVLATGSADGSIHVFDLSKGQGDE+QTLRGHRDRVYS DFHPTEPKLVS SADKTV IWEPNRKRN+RK
Sbjct: 520 MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLRGHRDRVYSTDFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 601
BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A835Z281_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z281_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.420e-32 Identity = 57/85 (67.06%), Postives = 71/85 (83.53%), Query Frame = 1 Query: 1 GMGYNELGNDWQHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNR--KRNTRK 249
G+GY + G DW HSLVLATGSADG+I+ FD+SKG+G ++QTLRGH DRVY+ FHPTEP+LVS SAD+TVRIW P++ +RN RK
Sbjct: 40 GIGYEDSGKDWAHSLVLATGSADGNIYTFDMSKGEGGDLQTLRGHNDRVYAVHFHPTEPRLVSGSADQTVRIWGPSKGGRRNGRK 124
BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A8J4PPE8_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PPE8_9MYCE) HSP 1 Score: 89.7 bits (221), Expect = 1.650e-15 Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 25 NDWQHSLVLATGSADGSIHVFD--LSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRK 234
ND S++LATGS+D + ++FD LSK G +Q L GH DRVYS FHP+EP L SCSAD T+R+W P +K
Sbjct: 446 NDINQSVLLATGSSDYNAYIFDIGLSKQSGRLLQKLEGHTDRVYSVKFHPSEPILASCSADSTIRLWTPKKK 517
BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A8H7Q4N1_MORIS (GED domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q4N1_MORIS) HSP 1 Score: 88.2 bits (217), Expect = 4.810e-15 Identity = 34/75 (45.33%), Postives = 54/75 (72.00%), Query Frame = 1 Query: 34 QHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRKRNTRK*VV 258
+ S++LATGS+D ++++++ + + MQ L GH DRVY+A+FHPTEP L SCSAD T+++W P R +K ++
Sbjct: 422 EKSVLLATGSSDPYVYLYNIGENTAELMQRLEGHTDRVYAANFHPTEPILASCSADYTIKVWGPGAPRGKKKGII 496
BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: R7QRT1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRT1_CHOCR) HSP 1 Score: 88.2 bits (217), Expect = 5.720e-15 Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 1 Query: 19 LGNDWQHSLVLATGSADGSIHVFDLS--KGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNR 231
+G Q+SL+LA+GSADG+I +FD+ G G +QTL GH+DRVY DFHP EP L SCSAD ++IW+ R
Sbjct: 482 IGGPIQNSLILASGSADGNICLFDVGGRPGTGALLQTLEGHKDRVYGVDFHPNEPILASCSADCGIKIWQSFR 554
BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A2V3IL28_9FLOR (WD repeat-containing protein 5B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL28_9FLOR) HSP 1 Score: 85.9 bits (211), Expect = 3.220e-14 Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 1 Query: 19 LGNDWQHSLVLATGSADGSIHVFDL--SKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIW 219
+G+ + SLVLA+GSADG+++VFD+ S G G +QTL GH+D YS DFHP EP L SCSAD + IW
Sbjct: 484 IGDAIESSLVLASGSADGNVYVFDVGGSAGTGTLVQTLIGHKDIAYSVDFHPCEPILASCSADSKINIW 552
BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A168T094_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168T094_ABSGL) HSP 1 Score: 80.5 bits (197), Expect = 1.590e-12 Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = 1 Query: 34 QHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRK 234
+ S++LATGSAD ++++++ + + + MQ + GH DRVYS +FHPTEP L S SAD TV+IW P+ K
Sbjct: 439 EKSVLLATGSADPYVYLYNVGEDRSELMQRMEGHTDRVYSVNFHPTEPILASGSADFTVKIWGPSFK 505
BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: T0QW05_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QW05_SAPDV) HSP 1 Score: 77.4 bits (189), Expect = 1.500e-11 Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 1 Query: 4 MGYN--ELGNDWQHSLVLATGSADGSIHVFDLS-------KGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRKR 237
+GY EL ++LATGSAD +I++ D++ G +Q L GH DRVYS DFHP+EP L S SAD TV+IW P R
Sbjct: 407 LGYQDRELQEKPDEVMLLATGSADNTIYLHDVTCRRGYGLNGSTSLLQRLEGHTDRVYSVDFHPSEPILASASADFTVKIWLPRTSR 493
BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Match: A0A433D2F6_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433D2F6_9FUNG) HSP 1 Score: 72.4 bits (176), Expect = 4.410e-11 Identity = 33/69 (47.83%), Postives = 41/69 (59.42%), Query Frame = 1 Query: 34 QHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSADFHPTEPKLVSCSADKTVRIWEPNRKRN 240
Q V + G I F ++ + MQ L GH DRVY+ FHPTEP L SCSAD TV+IW P +K+N
Sbjct: 127 QRGRVFSLGGGTNQIK-FTPNQNSAELMQRLEGHTDRVYAVHFHPTEPILASCSADFTVKIWGPTKKKN 194 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.911.1 >prot_C-linearis_contig104.911.1 ID=prot_C-linearis_contig104.911.1|Name=mRNA_C-linearis_contig104.911.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=83bp MGYNELGNDWQHSLVLATGSADGSIHVFDLSKGQGDEMQTLRGHRDRVYSback to top mRNA from alignment at C-linearis_contig104:455451..457389+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.911.1 ID=mRNA_C-linearis_contig104.911.1|Name=mRNA_C-linearis_contig104.911.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1939bp|location=Sequence derived from alignment at C-linearis_contig104:455451..457389+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:455451..457389+ >mRNA_C-linearis_contig104.911.1 ID=mRNA_C-linearis_contig104.911.1|Name=mRNA_C-linearis_contig104.911.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at C-linearis_contig104:455451..457389+ (Chordaria linearis ClinC8C monoicous)back to top |