Homology
BLAST of mRNA_C-linearis_contig104.910.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.550e-15 Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 2 Query: 116 REPSLDLMHALRGHTVKNWPIRCAFFRGLHHRPPRVRLGLAKGSGGG 256
+EPSL+LMHALRGHTVKNWPIR GLHHRPPRVRLGLAKG GG
Sbjct: 450 KEPSLELMHALRGHTVKNWPIR-----GLHHRPPRVRLGLAKGGNGG 491
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 282 |
| Cds size | 255 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927381.3335178-UTR-C-linearis_contig104:454548..454573 | 1622927381.3335178-UTR-C-linearis_contig104:454548..454573 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 454549..454573 + |
| 1690879666.8354857-UTR-C-linearis_contig104:454548..454573 | 1690879666.8354857-UTR-C-linearis_contig104:454548..454573 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 454549..454573 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927381.3444676-CDS-C-linearis_contig104:454573..454728 | 1622927381.3444676-CDS-C-linearis_contig104:454573..454728 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 454574..454728 + |
| 1690879666.8446643-CDS-C-linearis_contig104:454573..454728 | 1690879666.8446643-CDS-C-linearis_contig104:454573..454728 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 454574..454728 + |
| 1622927381.3566945-CDS-C-linearis_contig104:455272..455372 | 1622927381.3566945-CDS-C-linearis_contig104:455272..455372 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 455273..455372 + |
| 1690879666.8531392-CDS-C-linearis_contig104:455272..455372 | 1690879666.8531392-CDS-C-linearis_contig104:455272..455372 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 455273..455372 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.910.1 >prot_C-linearis_contig104.910.1 ID=prot_C-linearis_contig104.910.1|Name=mRNA_C-linearis_contig104.910.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=85bp
MKSSAGSQSSDAGRASLSAVAGGMEDGGEDREPSLDLMHALRGHTVKNWP
IRCAFFRGLHHRPPRVRLGLAKGSGGGCLSCGGGG back to topmRNA from alignment at C-linearis_contig104:454549..455372+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig104.910.1 ID=mRNA_C-linearis_contig104.910.1|Name=mRNA_C-linearis_contig104.910.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=824bp|location=Sequence derived from alignment at C-linearis_contig104:454549..455372+ (Chordaria linearis ClinC8C monoicous)
CGCTGCCACCACCGCGCCATCCGCGATGAAGTCCTCCGCGGGCTCGCAGT
CTAGCGACGCGGGCAGGGCTTCGTTGTCGGCGGTGGCCGGGGGGATGGAG
GATGGGGGAGAGGACCGGGAGCCATCGCTGGATCTGATGCACGCTCTTCG
GGGGCACACGGTCAAGAACTGGCCAATCCGGTATGTTTATTTTTTGTTTT
CGGGCTTGTTGGTTTGGTTCGGTTGCTGTTGGGGGGCTCGTTGTGGGTAC
AGGGGGTCGTGGGTGTTGGTGTTGGGGGATGGACGGCTTTTCTTTTCCCA
GCTTGGACGCGGACTTGGCAGATTGCATGTCGCTGCCGGCGATTTGAGGG
TACCTTTAACTTCTGCTACCGTTTTTTTGGCGATGTTTCGTCTTTTGGAC
GAACGCTTCACAGCGGGAGCCGCCATCGTTTCTTTGGGGAGCGAGCAACG
CGGACGAAATGGGGGTGGATTGACCCGCTACTTGCAGCCGACCGCTTGGG
CTGTTGAGGTCGCGATCCCTCGACAGCGGTCGGCAGGCCGCCGCATCAAG
TCAGATCGGACATGCACATCTTCCTGGCACCGTCTGCACCGACACATGTC
CGGGTCTGACCTCTCTCTCTCTCTCTCTCTATCTATCTCTCCCTCTCTCC
GCCTACATACGTTATTCTTTCCCACCCCAAAACCCCGCTCGCTCCGCACC
TCTACGCCTTGTCCCGCCCAAAAGTTGCGCGTTCTTCAGGGGTTTGCATC
ACCGCCCCCCGCGAGTCCGCCTCGGGCTAGCCAAGGGAAGCGGCGGGGGC
TGCCTCTCTTGCGGGGGAGGGGGC back to topCoding sequence (CDS) from alignment at C-linearis_contig104:454549..455372+ >mRNA_C-linearis_contig104.910.1 ID=mRNA_C-linearis_contig104.910.1|Name=mRNA_C-linearis_contig104.910.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at C-linearis_contig104:454549..455372+ (Chordaria linearis ClinC8C monoicous)
ATGAAGTCCTCCGCGGGCTCGCAGTCTAGCGACGCGGGCAGGGCTTCGTT
GTCGGCGGTGGCCGGGGGGATGGAGGATGGGGGAGAGGACCGGGAGCCAT
CGCTGGATCTGATGCACGCTCTTCGGGGGCACACGGTCAAGAACTGGCCA
ATCCGATGAAGTCCTCCGCGGGCTCGCAGTCTAGCGACGCGGGCAGGGCT
TCGTTGTCGGCGGTGGCCGGGGGGATGGAGGATGGGGGAGAGGACCGGGA
GCCATCGCTGGATCTGATGCACGCTCTTCGGGGGCACACGGTCAAGAACT
GGCCAATCCGTTGCGCGTTCTTCAGGGGTTTGCATCACCGCCCCCCGCGA
GTCCGCCTCGGGCTAGCCAAGGGAAGCGGCGGGGGCTGCCTCTCTTGCGG
GGGAGGGGGCTTGCGCGTTCTTCAGGGGTTTGCATCACCGCCCCCCGCGA
GTCCGCCTCGGGCTAGCCAAGGGAAGCGGCGGGGGCTGCCTCTCTTGCGG
GGGAGGGGGC back to top
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