Homology
BLAST of mRNA_C-linearis_contig104.900.1 vs. uniprot
Match:
D8LEB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB3_ECTSI)
HSP 1 Score: 166 bits (421), Expect = 1.980e-47
Identity = 92/134 (68.66%), Postives = 106/134 (79.10%), Query Frame = 1
Query: 43 MTELRRSSRVRQSAKHSSSYYEPSDKSASLFATPDVRPRKWQMAEAPVGYFTVNRWTPKDQQHLTADLHGGLTDPVEIAAAKRALRASSKVSTRFKTRGRMGGGARLSSARRAS--VSDNSYGVGAGPGPGQWG 438
MTELRRSSRVRQSAKH+S+YY P +K+ SLF+TP VRPR W+ A+ GYFTV RW P+DQQHLTA LHGGLTDP EIAAAK++LRA+SK STRFK+R RMG GARLS+ RR+S V DNS GA G WG
Sbjct: 1 MTELRRSSRVRQSAKHASTYYIPDEKN-SLFSTPGVRPRGWRTADVAAGYFTVKRWMPRDQQHLTAGLHGGLTDPAEIAAAKQSLRANSKASTRFKSRNRMGSGARLSTLRRSSGSVQDNSNFGGAAGGGSSWG 133
BLAST of mRNA_C-linearis_contig104.900.1 vs. uniprot
Match:
A0A835ZBY9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY9_9STRA)
HSP 1 Score: 68.9 bits (167), Expect = 5.430e-12
Identity = 44/105 (41.90%), Postives = 58/105 (55.24%), Query Frame = 1
Query: 43 MTELRRSSRVRQSAKHSSSYYEPSD-KSASLFATPDVRPRKWQMAEAPVGYFTVNRWTPKDQQHLTADLHGGLTDPVEIAAAKRALRASSKVSTR-FKTRGRMGG 351
MTELRRS RVRQSA+ + Y + AS+ A D+R R+WQ E +G F V +W PK QQHLTA+LH D + L+ S R ++R +GG
Sbjct: 4 MTELRRSVRVRQSARGGTETYNDFIVEEASVLAFKDIRAREWQKVEVQLGTFKVKKWVPKSQQHLTAELHEHKADTGHRLKKSKRLKGRIPPSKRGLRSRHSLGG 108
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.900.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.98e-47 / Id = 68.66 Expect = 5.43e-12 / Id = 41.90 Sequence D8LEB3_ECTSI A0A835ZBY9_9STRA
Match Name E-value Identity Description
D8LEB3_ECTSI 1.980e-47 68.66 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more] A0A835ZBY9_9STRA 5.430e-12 41.90 Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 4 Model size 445 Cds size 402 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927387.594656-UTR-C-linearis_contig104:391854..391896 1622927387.594656-UTR-C-linearis_contig104:391854..391896 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 391855..391896 + 1690879670.1437058-UTR-C-linearis_contig104:391854..391896 1690879670.1437058-UTR-C-linearis_contig104:391854..391896 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 391855..391896 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927387.6095226-CDS-C-linearis_contig104:391896..391924 1622927387.6095226-CDS-C-linearis_contig104:391896..391924 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 391897..391924 + 1690879670.1538796-CDS-C-linearis_contig104:391896..391924 1690879670.1538796-CDS-C-linearis_contig104:391896..391924 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 391897..391924 + 1622927387.620417-CDS-C-linearis_contig104:396832..396933 1622927387.620417-CDS-C-linearis_contig104:396832..396933 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 396833..396933 + 1690879670.1678996-CDS-C-linearis_contig104:396832..396933 1690879670.1678996-CDS-C-linearis_contig104:396832..396933 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 396833..396933 + 1622927387.6318073-CDS-C-linearis_contig104:397583..397700 1622927387.6318073-CDS-C-linearis_contig104:397583..397700 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 397584..397700 + 1690879670.1769028-CDS-C-linearis_contig104:397583..397700 1690879670.1769028-CDS-C-linearis_contig104:397583..397700 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 397584..397700 + 1622927387.6425037-CDS-C-linearis_contig104:397889..398045 1622927387.6425037-CDS-C-linearis_contig104:397889..398045 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 397890..398045 + 1690879670.1850855-CDS-C-linearis_contig104:397889..398045 1690879670.1850855-CDS-C-linearis_contig104:397889..398045 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 397890..398045 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.900.1
>prot_C-linearis_contig104.900.1 ID=prot_C-linearis_contig104.900.1|Name=mRNA_C-linearis_contig104.900.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=134bp
MTELRRSSRVRQSAKHSSSYYEPSDKSASLFATPDVRPRKWQMAEAPVGY back to top mRNA from alignment at C-linearis_contig104:391855..398045+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.900.1 ID=mRNA_C-linearis_contig104.900.1|Name=mRNA_C-linearis_contig104.900.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6191bp|location=Sequence derived from alignment at C-linearis_contig104:391855..398045+ (Chordaria linearis ClinC8C monoicous)TGAGCGCGGAGACAGGGCAGGCTGGCGGCGGCGTGGAGAGGG ATGACAGA
GCTCAGGAGATCATCTCGAG GTGGGTATGTGCCGGTGTACGACTTGCTCG
TAGAATGCTTGCCTTGCTTCGTCGCGACCCCTAGAAGCGAAACTCTTGGG
AACCCTACAGTCAGAAAGTCTGCCTATTTAACGCCAAAACGAAGCCTCTT
TTTTTTTCAAAGCCTCATCACTGGTGTGGAAAAGATTGCCAACCCGGTTG
TGAGCAGTCCGCGACCCCAGTCCCCCTTACTGTGCTGGCACGTCCCCACC
GCAACCCTCACCGTTTCCGAAGCCCGTACCCTTTGCGGGCCAATATTAAT
ATTGATATTTGGCAGCTTTTTGTGCCCTTCGACACTTTGAGAGCTTTTAG
CGGAGACGAACAGGCCACAAAGTTTTAGTTTTTCTACCGGCCCATTGTTG
CTCCCCACGCCTCATCACCCCATCGGTTGCGCGCGACTGCCCGTCCCGTA
AATGCGCATGGACGCAGCTAGGACTACAGCTATCCTCGTGAGCGTAGGCA
TGATGAAAGCCGTTAGAATCTGCGACTCGCGCACACAACCCCCTCACGGC
GCCGCCCCCTCGTCGGTTGCATACCACCCCTGCAACAGCACGAGAACCCA
CGTCTTGGCTTTCGCACAGGTATCGGCCCCAGAAATAACGATACAGTATA
ACGGAACGGCGGTGTAGGTGTGCGCAATTTTTCGCCGCATCCAAGTAGAT
TCGCCGGGCATACCGCCGTCTTCAAATCGCTTTATATCTCGCCCCTGCCC
CCACTTTACACGAAGAATGCTCTGCGAAACGTGATTTGTACCTCACTCTG
TATTGAATTGTTAATCCACCACTTAGGTATTTGGTATTTGGGCAATTTTT
TACGGGCGGCGCCGCCGCGCCCGTGGAAAAAAAACAAAAAAAAGAAGAGA
AAAAAGTTTCAAGTCTTGCGGCCGCGTTTTAGGTTTGGGACGGCGGATCC
TACAAATGCGAGAATACACACAATTATCATGTTTTGTGCATATCCTTCGT
GCGCGCCGCCATTTCCTGATATCACCACACCAGAGCGGCTGCAGTTTTAA
CATCACTGTCAGAAGGGGACGTTGAGAAATGCACAGCAGTTTGTCAGACG
TTGGGGTGAAACATAATGTACCACACAGCTTTATGGTGGGTGGTTTCTCC
CCGATATATTTGCCGTTGACCCGGCAGAGTGTTGCAGGGAAGGTCTGTGA
CGCTTTTACAGTTTTAGGTAATTTTGTTCCCCACCTATCCCATATTGTTG
TTGTTGTTGTTGTCTTCACATTAAAAACCATCCCGGTCCCGTCTCTATCC
AGTACCTCCTTCTGTCTCAACCTCTCCGTACTAATCCATCACTTGACGCG
GCCGATTTCCGTGGTCACAAGCTAATTACGTCACTCGGTATTGAAATCTT
AATCCATCTTTTAGAGATCTGTCTCTCTGAGGGGAGGTTCTTTCTTTGAT
GCCGTTTTGATTTATACTAAAAAAATTAGAGGCAGACTTTCCACATGAAA
AGAGGCGTTTGGGCAGAAACGATGTGTCGACGCATTGAGCGCAACACAAG
ACGGCGGTTTGCTCTTGGCGTCGTTGCTCGATTTTCAAACTCTCTTTTGA
AGTATAGAAAGCAGGTATACACTATGGATTGAGTTTTTTGCAGCCGAAGA
AGTGCAAGAATATATGAACGAGAATACAACGCAAAATGTTTCTGGGTACT
GGACCAGTACCTACTGGTAGTCTATTGGCTGGCAGTATACTGGTACTGGT
TTTGGTGCCGCCAGTACTTTAGTGAAGCCAATTTTTTGCTCTAGTGAAGC
CAAATCGCGTAAAAAAGCGCCTCCGCCGGGGCCCCCTCGCCAGCCGGGGG
GGGGCGGTGGCCGCGGCTACGCCGCGTGCCCAAAGTACTGGTAGAGTACT
GGTGTACTGGAGCAGCAGCCAGTACAAAAGGTACTGGTGCGCAGCGGAAT
GTTCGATCTTCCACGTCACGAAGCACCCGAAAAAAGAAAAAAGTACCAGG
TATGACACAGCAGTGTGACGCACCCAGCAGGTGCAACTTGCTGGCACGAC
GGAAAGAGTTTGAGCTTAGCGACATGCCGTCCATACTCCCTGCCGCCGAG
AGATGATTGAAGCGTACTCCGTGTGTACCTCCCCGTGGTCAGCTACCCGT
GGAGGAATGGGGTTGCAAAACAGGAAATGTCTAATACGAGAACCACAAGA
GTCATACTATTTAGTAGGACCAGGGCTTGGTCCGACACGCTACTAAGCAC
ACACGTGTAGCAACAACACTCGCCAAAAAATAGCGACGAAAACAACAATC
GCCAAAGCCTCCGCCATTTTCAACTGTAGTCAACCTCCTCACAACACAGA
AGGAACATTATCAAAAGACGATTGAACACCAGAATCAGCAGAAGCAGCAG
CAGCAGCAGGATCACACGATAGATTCTTTACACTTATTTATACCATAGAC
TAGTTGGGTCACGAATGAAAGATCACCATAGACGCTACCCCACAGCACAG
AAGGAATCCCCGACCATGGCTTTCGAACAGCGCGACCCTACGCCATTCCT
ATTCCTATACCTCTTCGAAGCTACCGGAAATCGCTCCGATTCCCTCCCCG
TAGGTTCTATGCAATTGACCACTCAGTTGCCAAGGCAGCTGCAAAATTAT
CATCAGCGCCCCCTATGATCGACTGACGAAGAGCAAAGAAAGGTATTGAG
AGCCCATCGCTGGAATATGGGCGTTATCGGTTGGCGGCAGCGCGATTTCA
GCCCGATTCAAAAGAACGCCAGCAGCACCATTGCACACCACGTAGACGAA
GCCCAGCACAACAGCAGTCAGTCTTCGGCTTCTTCTTCTTGATGAACCAC
CGTTGATATCCCTGGCATGATACGAAAGTAAATCATTGAACCACAAACTT
AATAAGCAGAACACCTTCACTTGCAGGAGAGGGGGGCTGGGATCCACCAA
GTGGGCTCACCAGGATACAGTAACGATCTGGTTTGAGCACTTGTATTATT
TGGTATCAGATAGCCGGAGTCGCATAAAACAACAAGCGTTTGTACAAAAG
GTGACGTTGACCAATCAATGGTGCATGCTATGCAACTGTAGACGAGACAC
TTCTGTATGTGTGGCTATTAACGAACGAACGTGTGCCCGTATTTATTTCG
CAGGGAAAAAGTGCAAATCCCCCGAAACGTCTGCTGCTGATGCTGCTGTA
ACATGGTTACTCTTGGTTCCGATCACAACGTACATCGACCGCTGCTCCTG
CTGTTGCGGTCACACCGGATGCAAGCAAGATCCGGTTGTTCTCTGATTCT
ACAGAATGATCCACGCACACAGCTGGCAGTCGGCACTGTAAAATGGCTGC
TCGTCTTCCCGAAACTACGTCGACAGGTGCTGTTGTTTCGTTTTGTACAC
ACTGGGCACAAGAAAAGGCGGGGAATACGGTAGATGCAAGTTCATACTCA
AACGTATTCCCGAGAGAAGACGATGAGCAAACACGACACGGCTGCGGTCA
TGACGTGTGTTCGTGAGAGAACGGAAACGTTGCGATAGAGTACACACACC
CAGCAGCTCAACTGGTACAACGGGGAGGGAGAGCCAGTGCCCAACATACT
ACAGTAGTCTATGTACATCGTTCTCGAGCGTTTCTTGGGCCGCGAGGATG
TTCGCACCCCTTTGTTTTAATGGAGCGAATGAGGAGGAAGTGACGGGACT
TTGAACATCGGTCCACGGGTGTGTATACTTGTGTGGTACCACGGCATCTA
CTGGTTTGTCTGGATGTGTGGGCGCAAACTGAGAGAGAAGGGAAGACGGA
GCAACCAGCAGATACAGCAAGTACCGTGAAGCCGATGCAAATTTTCACAG
CAAGTACTCACATGTCGAAGGTTTCATCCCTCGTGTGGTTTGCATGTCCC
ACGGCTAGATGCTTCCACAAAGCTCTGCTGCTGCTCCTCTCGAAGCTCTC
CTTCGACAAGCTGCCCGCTCCCGTGCGCTCTCCTGCGCTCCTCTTGTACA
TGCTCAAGTTTCGACTCGCGCACCCCCTCGATTTTTTGACTGGTCGAGCC
CATGAGTTTGTATGGCCATCCACAACGAGCTGGTAGCGATGCATGTTGCT
CTCTCTCTCTCTCTACCACACACACGCGGTGCACAGCGCATGTGTGGGCG
GTGTGTGCGTGCAAATGCGATGTGGCAGAGAGAACCAAAAAGGAGAACCA
AAAAGTGGCACTAACCGACGGATAGTTTTTTTCTGTTGTATAACCAAGTG
CATAAAAAGTGGCGCTTACCGACGGCGGGGGCTCCACTGCTAAAAAATTG
CCTCTCCCGGGATTTGTCTGTTTGAGGGGAGGTTCTTTCTTTGGTGCCGT
TTTGATTTATAAAAAAAACAGGGGTATGAATCGGATCCGATTCATTGATT
TAATCGGACCGATTTGAATCGACATCAGAATCGGAAAACGAGACCATGGT
TCACCGATGTTTCACCGATGTTTGTGTTTGAGTGTGTAATGCCCGAACGA
AGAGGGTGGCGGTATCCCAGACTAGAGGGGGGGCTCCTTGTATACGTGTG
AGTCCATACGCGTCTCTATTTCCCCCCCCGGTACGATGATGATCGTTAGC
AAGCGAGAACAGGGAACAGCTCATCATCTACACACACGCAACCCCTTTTG
GGTACCTTTCCCATCAAATACATCCTGCGTGGACCTCGTGTGCCCTCAAG
TAGAGTCTAGCCAACAGCGGTTGGGCAGTGAAAGGTGGTTGAAGTGGTTG
AGGTCGGGCCCCCTCACCAGCCGGGGGGGGGCGATGGGGGCTCGCACGGC
GAGCTCACGGCGCCTTCGCGGCGCCGATATATCGATAATCGGCTGCGCCG
AAAACCGATGTTTTAAACATCGTGAAACCCAACCGATTAATACCCCTGAA
AAATCATGATTTGTGCATATGCCTGCAGTTCGTCAGTCGGCCAAGCACTC
CTCTAGCTACTACGAGCCCAGCGACAAGAGCGCCAGCCTCTTCGCCACTC
CGGACGTGCGACCAAGAAAATGGCAGATG GTGAGTGAGCCTCTTTCTATC
GTGGAGGGAACTAGAGGGTACCAAGGGTTTGCATGGAGAAGGAAAAAACG
GCATTTCCTGCCTTGCTTTTGTTCGCGGCGTGCGTGGTACTGGTAACTAT
TCTATTTTGCTCGGCGGACGTATGTATTGTAGCATGTCTGGGCACGCTTT
TGTCTACCGGAAACACGAAACACGCACCTCAATACTGTATACTCCGGAGT
ATATTTTTCTCATTTTTACGGCTGTTGTGCTGTACCGCACCAGTGCTGTG
CTGCCAGCATATTCTAGCTGGAGACCGGCCTCTGCAAATTTGGGCACTTC
TATGCTTGCTTGATGCGCACAGACAGCATTCGAGGATGCACGTATGTATG
TAGCCTAGAATAGTGCTCACTCCTTGGTTGGTTTTCGATAACTTTAACTT
TCCACGCGGATACATCCGTCCGTCATTTCATTTCCAGTACTGATCCGCGC
CAGATCAATATGTCGGCGATCTCCATCAAAATCAAACTTGTCTGCCAGCT
GCCAACACCCACGCCCCGCACCTACCTACACGTGCAAAACGTCTCACCTT
TCCTTCGGCTTTTCATGTCCATGTCTGTGCTCGAATCGGAATTTCCCCCC
GGTCTCTTGTGGCGGTCACTCACGTCTAGGCGGAAGCTCCAGTGGGATAT
TTCACTGTGAACAGATGGACGCCCAAGGACCAGCAGCATCTGACCGCGGA
CCTTCACGGAGGCTTGACCGACCCGGTGGAGATCGCGGCTGCGAAG GTGA
GACAAATAAGGCAGGCAGGAGCCGGGCACAGAATCTTAGACCTTGCGATC
GATCGATCAAGAAAGCCACACACACTCCGCACAAGTTGCTGCACACAAAG
TGGTGAAAGAAACGAAGAGTCTCTCTGCTGCTGTAGACCTCATTCCTGCC
CCCCCCCTCCTCTCTGTCCCTTCCGCGCCTCCCAGCGGGCGCTTCGAGCA
AGCAGCAAGGTCTCCACCAGGTTCAAAACCAGAGGCAGGATGGGCGGCGG
GGCACGGTTGTCGAGTGCAAGACGCGCGTCCGTTAGCGACAACAGCTATG
GCGTGGGAGCAGGGCCGGGGCCGGGGCAGTGGGGCAGTGCT back to top Coding sequence (CDS) from alignment at C-linearis_contig104:391855..398045+
>mRNA_C-linearis_contig104.900.1 ID=mRNA_C-linearis_contig104.900.1|Name=mRNA_C-linearis_contig104.900.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at C-linearis_contig104:391855..398045+ (Chordaria linearis ClinC8C monoicous) back to top