Homology
BLAST of mRNA_C-linearis_contig104.898.1 vs. uniprot
Match:
D8LEB0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB0_ECTSI)
HSP 1 Score: 298 bits (762), Expect = 1.100e-88
Identity = 273/567 (48.15%), Postives = 316/567 (55.73%), Query Frame = 3
Query: 201 DMDLHDQSRHQRSSSVKAAAGEPTKEANKGLAWWRPR---RSNLADLSNTSSTSTSILSTSSPPQRQHRSNHHGQDSPSSANRLLFDDPATEGERGAAASGPAARPFETMQKPPQAAGGKQLWTRGSREGIAAPSPEAEDDRNXXXXXXXXXXXXXXXXXAYSNASXXXXXRPQEDLLGSSSGKLKSLKLASTGIANDA--TATATATGDSLPGTPVTSIGGSDASDSTWTNSPGRAKGRRHEXXXXXXXXXXXXXXLRWRSEQGRTLSKPPRPQREARPPAAAGNDTEVDTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGAGIAVANAGNAD--GMVCDAAREIEADAW--EGTDDETAVRFNEATERGVVYDILAVDRGCGFCDTSIVPFPVEEGGQVEATRMRDLTSGQSEFLARRGFAAGLVSHFLEETNCEFRVLQGGASCGMTAHQLQEAAVRLEEAFVPAVKRLRARTSMDVVLDSLFEGKDDAGEFVVRFEVSITRCHPEDIESSPAPALQECARAIREAIREEGVPEESTHEVVFVGRPMWELVSPVLDFSAR 1874
DM+ H S+ + V E +K+ + G AWWRPR R++LAD+S S+T+TS++S P++ + AAA + FET KP WTRGSR+G APSP+ +D XXXXXXXXXXXXXXXXX XXXXX P++ LLGSSSGKLKSLKLA G A TA A A PGTPV G STW P + R +XXXXXXXXXXXXXX RT AG GA AVA+ G G A + +W EG DDETA EEGGQV A RMR LTSGQ EFLARRGFAAGLVSHFLEETNCEFRVLQGGASCGM A QL++AA RLEE FVPAVKRLRAR+S+DVVLDSLF+G DDAG+FVVRFEV++TRCHPEDI+SSPAPAL+ECA AI+EA+R+EGV ++ THEVVFVGRPMWELVSPVLD SA+
Sbjct: 6 DMEKHSSSQDYQPKDV--GHSEVSKQNSNGFAWWRPRSILRASLADVS-LSTTNTSVVSXXXXXXXXXXXXXXXXXXXXXXXXXXX--PSSLFDVAAAAQ---QQQFETQLKPKIQH--HSNWTRGSRDGTEAPSPDEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEQGLLGSSSGKLKSLKLAPIGSEQLAKHTAAAAAVDSDRPGTPVRGGG----IGSTWCVGPLQV---RRQXXXXXXXXXXXXXXXXXXXXXXRTNHH-------------AG--------------------------------------AVGARFAVASEGGMGTLGEKATAQAGVGEGSWREEGMDDETAA---------------------------------EEGGQVAAERMRALTSGQGEFLARRGFAAGLVSHFLEETNCEFRVLQGGASCGMNAQQLEDAAARLEEVFVPAVKRLRARSSVDVVLDSLFQGADDAGDFVVRFEVTLTRCHPEDIDSSPAPALRECASAIKEAVRDEGVNDKDTHEVVFVGRPMWELVSPVLDLSAK 471
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.898.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.10e-88 / Id = 48.15 Sequence D8LEB0_ECTSI
Match Name E-value Identity Description
D8LEB0_ECTSI 1.100e-88 48.15 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-00_001570.1 Exons 4 Model size 2433 Cds size 1695 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927386.9084208-UTR-C-linearis_contig104:372226..372761 1622927386.9084208-UTR-C-linearis_contig104:372226..372761 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 372227..372761 - 1690879669.9039779-UTR-C-linearis_contig104:372226..372761 1690879669.9039779-UTR-C-linearis_contig104:372226..372761 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 372227..372761 - 1622927386.9746299-UTR-C-linearis_contig104:375716..375919 1622927386.9746299-UTR-C-linearis_contig104:375716..375919 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 375717..375919 - 1690879669.9738793-UTR-C-linearis_contig104:375716..375919 1690879669.9738793-UTR-C-linearis_contig104:375716..375919 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 375717..375919 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927386.9193099-CDS-C-linearis_contig104:372761..372960 1622927386.9193099-CDS-C-linearis_contig104:372761..372960 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 372762..372960 - 1690879669.9129858-CDS-C-linearis_contig104:372761..372960 1690879669.9129858-CDS-C-linearis_contig104:372761..372960 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 372762..372960 - 1622927386.9322138-CDS-C-linearis_contig104:373496..373684 1622927386.9322138-CDS-C-linearis_contig104:373496..373684 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 373497..373684 - 1690879669.9261322-CDS-C-linearis_contig104:373496..373684 1690879669.9261322-CDS-C-linearis_contig104:373496..373684 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 373497..373684 - 1622927386.9446201-CDS-C-linearis_contig104:374002..374069 1622927386.9446201-CDS-C-linearis_contig104:374002..374069 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 374003..374069 - 1690879669.940172-CDS-C-linearis_contig104:374002..374069 1690879669.940172-CDS-C-linearis_contig104:374002..374069 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 374003..374069 - 1622927386.961439-CDS-C-linearis_contig104:374475..375716 1622927386.961439-CDS-C-linearis_contig104:374475..375716 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 374476..375716 - 1690879669.9581575-CDS-C-linearis_contig104:374475..375716 1690879669.9581575-CDS-C-linearis_contig104:374475..375716 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 374476..375716 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.898.1
>prot_C-linearis_contig104.898.1 ID=prot_C-linearis_contig104.898.1|Name=mRNA_C-linearis_contig104.898.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=565bp
MDLHDQSRHQRSSSVKAAAGEPTKEANKGLAWWRPRRSNLADLSNTSSTS back to top mRNA from alignment at C-linearis_contig104:372227..375919-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.898.1 ID=mRNA_C-linearis_contig104.898.1|Name=mRNA_C-linearis_contig104.898.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3693bp|location=Sequence derived from alignment at C-linearis_contig104:372227..375919- (Chordaria linearis ClinC8C monoicous)CCTCCCTCTCGAGCAAGAACACGCGACGGTAGGGCACGTGCTGAGTACTG
CAGCCACACCACAACCACCTATCGGTGGATCTTTTCGTTGCACGGAGTCC
TCGGTCTCGGCCTTGGTCTCAGCTTGCTCGGTTAAACGTCTGCCGTTGAC
CGTTTAGCGCTTTCCTCTTTCCTGCACATCAGAGAGAGAGTGCCCGGCCG
GAC ATGGATCTCCACGATCAGAGTCGCCACCAAAGGTCTTCTTCCGTGAA
GGCCGCGGCGGGCGAACCGACCAAAGAAGCTAACAAGGGACTTGCGTGGT
GGAGACCAAGGCGCTCCAACCTCGCCGACCTCTCCAACACCAGTAGCACA
AGCACGAGCATCCTCAGCACCAGCTCTCCGCCCCAACGGCAACACCGCAG
CAACCACCACGGGCAAGATTCGCCGTCGTCCGCCAACCGCCTCCTGTTCG
ACGACCCGGCAACAGAGGGAGAAAGAGGGGCAGCAGCGTCAGGACCAGCT
GCACGGCCATTCGAGACGATGCAGAAGCCACCCCAGGCCGCCGGCGGAAA
ACAGCTCTGGACGCGCGGCAGCAGAGAAGGAATCGCCGCACCGTCTCCCG
AGGCAGAAGACGACCGTAACAACACCAACACCGGCGCAACAACCACCGGT
GCACCACCAGTGCTCCTGCCGGCGTACAGCAACGCCTCCACCGCGCGTCG
GCGACGACCCCAGGAAGATCTTCTCGGATCCTCGTCGGGCAAGCTAAAGT
CCCTCAAGCTGGCTTCAACGGGTATTGCGAATGATGCGACCGCCACCGCG
ACCGCCACAGGCGATTCGTTGCCCGGCACACCCGTAACCAGCATCGGCGG
CAGTGATGCCAGCGATAGCACCTGGACGAATTCCCCGGGGCGCGCGAAAG
GCCGCCGGCATGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCTACGATGGCGATCGGAGCAGGGCCGCACTCTTTCGAAGCCGCC
GCGCCCCCAGCGGGAGGCGAGACCACCTGCTGCCGCTGGAAACGACACCG
AGGTCGACACCACCAACCGCAGCACAGCGGCAACGCACGGCGAGAAGGCG
GCGGTGGTGGCGCAGGGGGGAGCTGGGGGTAGCAGCAGCAGCAACAGCAG
CAGTACGAACGGGGCGGGAATCGCCGTTGCCAACGCTGGTAACGCCGACG
GGATGGTCTGCGACGCCGCAAGGGAGATAGAGGCGGATGCCTGGGAGGGA
ACGGACGACGAAACGGCCGTGCGGTTCAACGAGGCGACGGAGCGGGGCGT
GGTGTACGACATCCTCGCCGTTGATCGGGGTTGCGGGTTCTGCGACACGT
CTATCGTGCCGTTCCCCGTTGAGGAAGGGGGCCAGGTGGAGGCGACAAGG
ATGAGGGATTTGACGTCCGGTCAGAGCGAGTTTCTTGCTAGAAG GTGGGT
AGGTGGATGGGCGATTGGATGCGTGTGTGGCCCGTTCTTGAAGGGGTTAG
TAGGAAGGCGGAGGTGGGAACACTGTTTTGTTTCCCCCCCCGTGATCCGT
GTTGTTGGCTTGCACGTTTGCTGGCTTGCTTCTTGGTTTTTCATTTTGGA
GTCATTCTTTCGTGTGTCTCACCGATGCGTGTGCGACGAATGGTTTCGCT
TTGTGCTTGGAGCTGTGGTGATGCCGGTTCGTCGGGGTACTGCTGTTGCA
CTTTTTACGCTTCGCGGTTGTCACAAGTTCCTTGGCGGCTTAAATTAGGT
GTCATTTAGTGCGCCAACCGCTCCCTTTTCCCCCCATGTGTCCCGCTCTT
TGGGTACTGTCCCCGTTCTCTTTGTTCTTTGTGCTCTCTCCTGAAAGCAG
GGGCTTTGCCGCGGGACTGGTGTCCCATTTCTTGGAGGAAACGAACTGCG
AGTTCAGGGTGCTGCAG GTGATGGCTTGGGACGAGAGGTGTTACTGTCCG
TGTGGCGGCAGCTGCTCGCCAGTATCCACACACACATAAAGACAACAACA
GTGGGTGTTTCGTTGAGCTTCAGTATAAGCGCAGCACACAAAGCGACGAC
AGGAGTCAACGGCACCTTCGCAAACGGTCAAACGTTAACGTTCACCGTGT
TTGGCTCTGGCTGGGTGCTGCTTGGACCAATCTCCCCACGCCAGTTCTGA
TATTACGCTCACACACTGGACTTATGCCCCCCGCCCCTTCCCGGTTCGCC
TGGTTTGTGTTGCGTGCCTCCGTTCGTAACAACAGGGAGGGGCATCCTGC
GGGATGACCGCGCACCAGCTGCAGGAGGCGGCCGTCCGGTTGGAGGAGGC
GTTCGTGCCGGCCGTCAAGCGCCTGCGCGCGCGGACGTCGATGGACGTTG
TGCTCGACTCGCTGTTCGAGGGCAAGGACGACGCCGGGGAGTTCGTCGTG
CGCTTCGAGGTTTCCATCACCAG GTGAGGCGTTGCAAACCGACGATGAGT
TAGGGGGAATCAAAACGTCTACGCAGCAGTGTTTTCTTCTCAGGGTTTTG
TTACTTTTCTGACTTGAACCCCCGAGCCTGTATCCGCGATGCGCCATTTT
CTCTTACCGGTTGTTCCGCATGTTTTCCGGGGCTGCGTCGGCCTGTAGAT
TTTCGCTCTGTTCTAGACCTTCCACGTCAAGAAGTTGGGTGCGTTGGTGC
AAATGGTTGATTCACGGCCTCCACGTCTCTACCACCGCCCAGACAGCCAG
CTATCCCTCTTCCCCCCTCGTGAGCAGCGTAGGGTGTTTAGCAGAATGTC
CTGCTCTTTATTCACCGACGTACAAGCTTGCGCATGCCTTGCCGTGCCTG
AACGTATCTCCTGATCTAGCTCTGGTTCTTGCAGCACAAGGAGGCCATCG
CCACCCCCCAGCTTCACTACATGGCAATTGTTTTTTTCCCCACCCGGAGG
GAACGAATAAGGGCACAGACCCCCTTACGAATTTCGAATTGCCTATATGA
TCCACGCAGGTGCCACCCGGAGGACATCGAGTCCAGCCCCGCCCCCGCCC
TCCAAGAGTGCGCCCGGGCGATCCGAGAAGCCATCAGGGAGGAGGGGGTC
CCGGAAGAGTCGACGCACGAGGTGGTGTTCGTGGGCAGGCCCATGTGGGA
GCTGGTGTCGCCGGTCCTGGATTTCTCCGCGAGGCCAAGAGAGGAGGCTG
CTTGCTGA CGAGGAGGAGGAGGAGGAGTAGGCGTGGAGGTCGCGGGAAGG
GGGAGGAGGAGGCGGCGCACTCGAGCTACGCTCCGCAGGGCCGCTCGCTG
TGTTGCCAAAAACGCGTCCCTATTGTAGCATAGCTGGGACGAGAAACATC
CGGTTTTCCCCCTGAAGGCCGTTGATATCTTGGCGCGGGCGTGACGGTGC
TTTTAGTTGCGTTGGGGGAGCGCGGCGTGGGGTTGAGAGGGGGAGGTAAG
CAAGCTGGACTGCCCAGCGTGAGCCCCTAACAACTGTAATCGAGAGTGGC
ACTCCGCACCAGGCGGGGCCACTACTTGTAGGATTCCATGTCGCCGTGAT
TCAAATGAGGTTAAGCGAGGGGTCTTCACCAATGACCCCGTACGTCGGAC
AGCAACTACGTCAATCAACATTAACGATGGGCGTGACGACGGGGTAGTTT
TAGAAGGTGGAAGAATGGGCATGATTCGCATGCAGGTTGCGGCCGTCCGC
CATTCTTTCAGGAGGAAAGCACTGGCGGACAGAGAGGACGAGG back to top Coding sequence (CDS) from alignment at C-linearis_contig104:372227..375919-
>mRNA_C-linearis_contig104.898.1 ID=mRNA_C-linearis_contig104.898.1|Name=mRNA_C-linearis_contig104.898.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3390bp|location=Sequence derived from alignment at C-linearis_contig104:372227..375919- (Chordaria linearis ClinC8C monoicous) back to top