Homology
BLAST of mRNA_C-linearis_contig104.895.1 vs. uniprot
Match:
D7G3R8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3R8_ECTSI)
HSP 1 Score: 71.6 bits (174), Expect = 5.330e-13
Identity = 38/57 (66.67%), Postives = 42/57 (73.68%), Query Frame = 2
Query: 56 MAHPETTPTKRGSDDNWKTTPREDAFESPGEPRKASTRRPPLSPASPNTGRTPPGAR 226
M HP+ TP KRGS D+W T AF+SP +PR ASTRRPP SP SPNTGRTPP AR
Sbjct: 1 MGHPKNTPRKRGSQDDWTTPLGNYAFDSPVKPRNASTRRPPFSPTSPNTGRTPPRAR 57
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.895.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 5.33e-13 / Id = 66.67 Sequence D7G3R8_ECTSI
Match Name E-value Identity Description
D7G3R8_ECTSI 5.330e-13 66.67 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 3 Model size 233 Cds size 231 Stop 0 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927386.734308-CDS-C-linearis_contig104:344270..344318 1622927386.734308-CDS-C-linearis_contig104:344270..344318 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 344271..344318 + 1690879669.8284209-CDS-C-linearis_contig104:344270..344318 1690879669.8284209-CDS-C-linearis_contig104:344270..344318 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 344271..344318 + 1622927386.7504628-CDS-C-linearis_contig104:346043..346122 1622927386.7504628-CDS-C-linearis_contig104:346043..346122 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 346044..346122 + 1690879669.839151-CDS-C-linearis_contig104:346043..346122 1690879669.839151-CDS-C-linearis_contig104:346043..346122 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 346044..346122 + 1622927386.7615056-CDS-C-linearis_contig104:346296..346400 1622927386.7615056-CDS-C-linearis_contig104:346296..346400 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 346297..346400 + 1690879669.8493063-CDS-C-linearis_contig104:346296..346400 1690879669.8493063-CDS-C-linearis_contig104:346296..346400 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 346297..346400 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.895.1
>prot_C-linearis_contig104.895.1 ID=prot_C-linearis_contig104.895.1|Name=mRNA_C-linearis_contig104.895.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=77bp
PQITTITTTHQRIRVQDRDGTSRDYANEAGVRRQLEDYTTRRCLRITRGA back to top mRNA from alignment at C-linearis_contig104:344271..346400+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.895.1 ID=mRNA_C-linearis_contig104.895.1|Name=mRNA_C-linearis_contig104.895.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2130bp|location=Sequence derived from alignment at C-linearis_contig104:344271..346400+ (Chordaria linearis ClinC8C monoicous)CCGCAGATAACAACCATCACTACGACCCACCAACGAATAAGAGTGCAG GT
GAGCAGGGCAGTGTGGCTTTCCGCCTCCCTGCATTCCGCGCATGAGGGAG
AGGTTCACTTGGATGACACACACACAGACAGAGAGAGATAGAGAGAGACA
GAGCGAGCGAAGGGAGTTAAAGAGTTTCTTTCGCTACAAAGCAGATTCTT
CGCTGAGGGATCTGTGTATGTGTGATGCAACAGCAGTCGCGAGGCCGCAC
ACCCGCGTGTCCAGCCGAAACGAGCTGTTGTCCTGATGGTTCATCTGGTA
CTCTTCTCGAGGGGTTGTCACATCAGCACGTTGCCCTGCTCATAGGCTGC
ACTCGCAGCAGCGATCATGAACACAGTTGAATCAAATAAATGTGCATGTC
GGTCGGAGATGTTCCTGGCTTCAACGACGCTTCCCGTGGTGATTGGATCT
CTTGTGCCGTAGCACCCAGTTAAAAAGCCCACCCAGCAGTGCTCTGAGAG
TTCAGGGGGAGACTATGACGACCTCGGTTTGCTCCTTTACAAATCAAAAG
GCCGGGTGTGTGTCGTCCTCCAGCCTGCACATCTACGTGTATTTTCGCAG
CGTAGTAGATTCGGCTGTTCTTGTCACACATCCCGAAGAGCGCACCACCA
AGTGTGTGCTCGACAAGGGGTTGGCAACCGTTCGTTGCCCTGCTCAAGTT
TTGCCCTCGGTATTCATAGCTGCAGAAGCTTCAGCTCGAGGCCCCTCGGT
GAACAGGTGATTTCGTAGTACCGTCCCGTTCTCCCCTCGCTCGGTCTGTC
TCTCTGTCCGTCTATCTGTCTGCCCTCTCTGTCTCCCTCTTCGTTTCTCT
CCATGCACAACTTTAACTTTTCCCCCGTGGCTTGAAGTCGAACTTACGCT
TTCACTGCAGCAGCACAGCCCCGGTACCACAATGGTTTGAACAGGGCTTG
GAACGTATCACCACGAGAAGATGACAATTCTGCACTTCTCCGCCAAACTT
GTTGCGTGAACAACATTCATTTACACTGGGTCAACCCAGACTGTCCTGTA
GCGATGAGGGGCGGTTTCGAATATAAAATCATTCTCTGTCTCCCTCTTCG
TTTCTCTCCATGCACAACTTTTCCCCCGTGGCTTGAAGTCGAACTTACGC
TTTCACTGCAGCAGCACAGCCCCGGTACCACAATGGTTTGAACAGGGCTT
GGAACGTATCACCACGAGAAGATGACAATTCTGCACTTCTCCGCCAAACT
TGTTGCGTGAACAACATTCATTTACACTGGGTCAACCCAGACTGTCCTGT
AGCGATGAGGGGCGGTTTCGAATATAAAATCATTCTCTGTCTCCCTCTTC
GTTTCTCTCCATGCACAACTTTTCCCCCGTGGCTTGAAGTCGAACTTACG
CTTTCACTGCAGCAGCACAGCCCCGGTACCACAATGGTTTGAACAGGGCT
TGGAACGTATCACCACGAGAAGATGACAATTCTGCACTTCTCCGCCAAAC
TTGTTGCGTGAACAACATTCATTTACACTGGGTCAACCCAGACTGTCCTG
TAGCGATGAGGGGCGGTTTCGAATATAAAATCACTTCAACTGTTGACCAA
GTGCTGCATGTAGTCAAACACATTGAGGGGCGCCGATCCCATTCACTGGG
CTCCACGAGCCCATTCACTAGACTCCACTCACATCCAGCGAAACTGGATG
GACAACAACGCCCGTCGACGAAACTGAATGCTGTTTGCTTCCGCGCATCC
GACTGCCTGCTTTCAAACACCAGGACCGCGATGGCACATCCCGAGACTAC
GCCAACGAAGCGGGGGTCAGACGACAACTGGAAGACTACACCACGCGAAG
AT GTAAGAGCGGCGAATGGTACACAGACGCACATAGCCTCTACGCGGCTT
GTGGTGCTCACATCGTGTCTTCAAAACTCCCCGAGATCTTCGCTGTACTC
AACAGACATACACAGTCCGCTTACGACATTCACGGTACCCCCCCCCGTGT
GCACCTTCTTATCTTGCATCCAATAGGCCTTCGAATCACCCGGGGAGCCG
AGAAAGGCATCCACTCGACGCCCTCCACTTTCCCCCGCCTCGCCCAACAC
AGGCAGAACGCCTCCCGGAGCACGGGTAAG back to top Coding sequence (CDS) from alignment at C-linearis_contig104:344271..346400+
>mRNA_C-linearis_contig104.895.1 ID=mRNA_C-linearis_contig104.895.1|Name=mRNA_C-linearis_contig104.895.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at C-linearis_contig104:344271..346400+ (Chordaria linearis ClinC8C monoicous) back to top