mRNA_C-linearis_contig104.893.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.893.1 vs. uniprot
Match: D8LEA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA8_ECTSI) HSP 1 Score: 234 bits (597), Expect = 8.900e-63 Identity = 205/557 (36.80%), Postives = 259/557 (46.50%), Query Frame = 1 Query: 241 EDEMCEAHVTLGRLSHVKACHGETSEQMMRSLADAGAREAVEAAMAKGRSDYETLKENLEKLYRKSMADLHKRKMTVEAPTRARVELVAGQKKAADDAEKELKVLMANPNEGVLTRELPQALRRANKVLKASIKLIGLRLPEVKPVTVKDFPPGRLHNVIIAPRRSGQGQRXXXXXXXXXRTGGVRKRPPSTKPPRVTAAHEEGEAEEAHRERQSRPPIPLRSMSSSSPFSDNGDKLSSRSLPGSQSQSLASAASAVAPGDEXXXXXXXXXXXXXEAGIRGVAKSECCRNGQSIRHRGAPAGWDEKRGEELGDVGDAPLGVAAKACSHCACACRADDVRAAYRTLRKRYRALKDQADKEDVRARTEEQRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKNGKVEPVAPAXXXXXXXXXSSEGV----------------------LASSQLAELRHKVALGEECLQEALHEALSLRQEITKRKQHGEMLLALIRFLKGQMSAYA-NNADWGEGEEKWRGMGTAAPVRPKSDYGSSDSAIDYISP 1842
ED+MCEA V LGRL HV HGE M++SL DAG+R+A+++A +K RS+YE+LK+ LE+LY++S+ DL + +E PT AR+ELV GQK A AE ELK +MA ++ VL RELP +RRANK LKASIKLIGLRLP+ K E A +A GSQ+ +A+AA+A G CCR A + WD+++ + D LG A +ACSHCACACRAD+V AAYRTLRKRY+ALK QADKE++R EEQ + XXXXXXXXXX G G P A A ++G+ + A LR KVA+GEECL +AL EALSLR+EI +RKQHGE+L A IRFL+GQ SA+ N+A EG+ P P G SDS + ISP
Sbjct: 2 EDDMCEASVILGRLGHVNERHGEAMSLMVKSLVDAGSRDAIKSATSKVRSEYESLKQKLEELYQQSIQDLQAHRSIMEGPTIARIELVTGQKGAVGHAEDELKEVMAKTDQEVLRRELPDVMRRANKTLKASIKLIGLRLPKAK----------------------------------------------------------EQAAAKAR---------------------------------GSQAGEVAAAAAA------------------------GQGGPGCCR---------AASAWDDEQSDRGRGPADTALG-APEACSHCACACRADEVWAAYRTLRKRYQALKSQADKEELRVNAEEQCREMQSELGRQRVKMXXXXXXXXXXMDEDLVKIVSEIHAELYGNRGDRGPAAAAERGDKEAEAGTDGLGITQVDLQSLRDVVQASFKESQAVKEESAALREKVAIGEECLYDALQEALSLREEIARRKQHGEVLFARIRFLQGQASAHVKNSAKTREGD----------PRSPADSTGDSDSHSEPISP 423
BLAST of mRNA_C-linearis_contig104.893.1 vs. uniprot
Match: A0A6H5K5N0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N0_9PHAE) HSP 1 Score: 146 bits (369), Expect = 3.260e-33 Identity = 133/402 (33.08%), Postives = 164/402 (40.80%), Query Frame = 1 Query: 604 LRRANKVLKASIKLIGLRLP---EVKPVTVKDFPPGRLHNVIIAPRRSGQGQRXXXXXXXXXRTGGVRKRPPSTKPPRVTAAHEEGEAEEAHRERQSRPPIPLRSMSSSSPFSDNGDKLSSRSLPGSQSQSLASAASAVAPGDEXXXXXXXXXXXXXEAGIRGVAKSECCRNGQSIRHRGAPAGWDEKRGEELGDVGDAPLGVAAKACSHCACACRADDVRAAYRTLRKRYRALKDQADKEDVRARTEEQRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGKNGKVEPVAPAXXXXXXXXXSSEGV----------------------LASSQLAELRHKVALGEECLQEALHEALSLRQEITKRKQHGEMLLALIRFLKGQMSAYANNA 1734
+RRANK LKASIKLIGLRLP EVK +TV+ FPP RLHN +I VTA E+ A+ GSQ+ +A+AA+A G CCR + WDE++ + D G A +ACS CACACRAD+V AAYRTLRKRY ALK QADKE++R EEQ + G G V P A A +EG+ + A LR KVA+GEECL +AL E+LSLR+EI +RKQHGE+LLA IRFL+GQ SA+ N+
Sbjct: 1 MRRANKTLKASIKLIGLRLPKASEVKRITVEGFPPSRLHNAVI-----------------------------------VTAPEEQAAAKAR----------------------------------GSQAGEVAAAAAA------------------------GQGGPGCCRTASA---------WDEEKSDRGRGPADTAPG-APEACSRCACACRADEVWAAYRTLRKRYHALKSQADKEELRVSAEEQCREMQSELGRQRVKMEAEFDEKKSKMNKDLVNIVSEIHTELYGNRGNVGPAA-AGRGHKEAEAGTEGLGITQVDLQSLRDVVQASFKESQAVKKESAALREKVAIGEECLHDALQESLSLREEIARRKQHGEVLLARIRFLQGQTSAHVKNS 298 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.893.1 >prot_C-linearis_contig104.893.1 ID=prot_C-linearis_contig104.893.1|Name=mRNA_C-linearis_contig104.893.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=755bp ADHGSEPRRKRLYFTQKLPPHAPCAHCLASLPVACVPSGICPRGRKAHTSback to top mRNA from alignment at C-linearis_contig104:296460..312526- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.893.1 ID=mRNA_C-linearis_contig104.893.1|Name=mRNA_C-linearis_contig104.893.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=16067bp|location=Sequence derived from alignment at C-linearis_contig104:296460..312526- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:296460..312526- >mRNA_C-linearis_contig104.893.1 ID=mRNA_C-linearis_contig104.893.1|Name=mRNA_C-linearis_contig104.893.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4530bp|location=Sequence derived from alignment at C-linearis_contig104:296460..312526- (Chordaria linearis ClinC8C monoicous)back to top |