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Homology
BLAST of mRNA_C-linearis_contig104.891.1 vs. uniprot
Match: A0A6H5KK88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK88_9PHAE) HSP 1 Score: 150 bits (378), Expect = 5.840e-40 Identity = 76/99 (76.77%), Postives = 86/99 (86.87%), Query Frame = -1 Query: 1 RCLSNARYMQRNANIARRGYVRASAVDRTAGRRKPTTNAFKLKLQPDAVVTGDSSSGWQKAVYSVSTTTRGERVTVVTNFTPHQPGSYKIVCCSSQCNS 297
+C+ NARY +A A+ G+VRASAVDRTAGRRKPTT+ FKLK PD ++TGDSSSGWQKAVYSVSTTTRGERVTVVTNF P++PGSYKIVCCSSQC S
Sbjct: 227 KCVGNARYRTNSATRAQGGHVRASAVDRTAGRRKPTTSVFKLK--PDPLLTGDSSSGWQKAVYSVSTTTRGERVTVVTNFIPNEPGSYKIVCCSSQCIS 323
BLAST of mRNA_C-linearis_contig104.891.1 vs. uniprot
Match: A0A6H5JJM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM9_9PHAE) HSP 1 Score: 150 bits (378), Expect = 5.970e-40 Identity = 76/99 (76.77%), Postives = 86/99 (86.87%), Query Frame = -1 Query: 1 RCLSNARYMQRNANIARRGYVRASAVDRTAGRRKPTTNAFKLKLQPDAVVTGDSSSGWQKAVYSVSTTTRGERVTVVTNFTPHQPGSYKIVCCSSQCNS 297
+C+ NARY +A A+ G+VRASAVDRTAGRRKPTT+ FKLK PD ++TGDSSSGWQKAVYSVSTTTRGERVTVVTNF P++PGSYKIVCCSSQC S
Sbjct: 185 KCVGNARYRTNSATRAQGGHVRASAVDRTAGRRKPTTSVFKLK--PDPLLTGDSSSGWQKAVYSVSTTTRGERVTVVTNFIPNEPGSYKIVCCSSQCIS 281
BLAST of mRNA_C-linearis_contig104.891.1 vs. uniprot
Match: A0A6H5JSZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ5_9PHAE) HSP 1 Score: 148 bits (373), Expect = 1.960e-39 Identity = 75/99 (75.76%), Postives = 85/99 (85.86%), Query Frame = -1 Query: 1 RCLSNARYMQRNANIARRGYVRASAVDRTAGRRKPTTNAFKLKLQPDAVVTGDSSSGWQKAVYSVSTTTRGERVTVVTNFTPHQPGSYKIVCCSSQCNS 297
+C+ NARY +A A+ G+VRASAVDRTAGRRKPTT+ FKLK PD ++ GDSSSGWQKAVYSVSTTTRGERVTVVTNF P++PGSYKIVCCSSQC S
Sbjct: 25 KCVGNARYRTNSATRAQGGHVRASAVDRTAGRRKPTTSVFKLK--PDPLLAGDSSSGWQKAVYSVSTTTRGERVTVVTNFIPNEPGSYKIVCCSSQCIS 121
BLAST of mRNA_C-linearis_contig104.891.1 vs. uniprot
Match: A0A6H5KMJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ9_9PHAE) HSP 1 Score: 123 bits (309), Expect = 7.080e-31 Identity = 64/103 (62.14%), Postives = 78/103 (75.73%), Query Frame = -1 Query: 1 CRCLSNARYMQRNANIARR---GYVRASAVDRTAGRRKPTTNAFKLKLQPDAVVTGDSSSGWQKAVYSVSTTTRGERVTVVTNFTPHQPGSYKIVCCSSQCNS 300
C+C ++ ++ AN ARR G VR SAV+RTA RRKP T+AFKL +Q D +V GDSSSG KAVYSVSTT RG+R TV+TNF P QPGSYKIVCC+++C S
Sbjct: 390 CKCKRHSENLRVRANSARRAQDGIVRRSAVERTATRRKPATSAFKLPVQLDPLVAGDSSSGGLKAVYSVSTTARGDRYTVITNFDPQQPGSYKIVCCNNECTS 492
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.891.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 308 |
| Cds size | 306 |
| Stop | 1 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927381.4786968-CDS-C-linearis_contig104:291790..292096 | 1622927381.4786968-CDS-C-linearis_contig104:291790..292096 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 291791..292096 + |
| 1690879666.900065-CDS-C-linearis_contig104:291790..292096 | 1690879666.900065-CDS-C-linearis_contig104:291790..292096 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 291791..292096 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.891.1 >prot_C-linearis_contig104.891.1 ID=prot_C-linearis_contig104.891.1|Name=mRNA_C-linearis_contig104.891.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=102bp
GVALAAAADNLVAARLVGGEVRDDGDALTPSGRGNRVHRLLPPARAISCD
HGVGLQLELEGVGRWLPSPRRSVNGTRSYIAASCDICISLHVPGVAQAPA
L* back to topmRNA from alignment at C-linearis_contig104:291791..292096+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig104.891.1 ID=mRNA_C-linearis_contig104.891.1|Name=mRNA_C-linearis_contig104.891.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at C-linearis_contig104:291791..292096+ (Chordaria linearis ClinC8C monoicous)
GGAGTTGCATTGGCTGCTGCAGCAGACAATCTTGTAGCTGCCAGGCTGGT
GGGGGGTGAAGTTCGTGACGACGGTGACGCGCTCACCCCGAGTGGTCGTG
GAAACAGAGTACACCGCCTTTTGCCACCCGCTCGAGCTATCTCCTGTGAC
CACGGCGTCGGGCTGCAACTTGAGCTTGAAGGCGTTGGTCGTTGGCTTCC
GTCGCCCCGCCGTTCGGTCAACGGCACTCGCTCGTACATAGCCGCGTCGT
GCGATATTTGCATTTCTTTGCATGTACCTGGCGTTGCTCAAGCACCTGCA
TTGTAA back to topCoding sequence (CDS) from alignment at C-linearis_contig104:291791..292096+ >mRNA_C-linearis_contig104.891.1 ID=mRNA_C-linearis_contig104.891.1|Name=mRNA_C-linearis_contig104.891.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at C-linearis_contig104:291791..292096+ (Chordaria linearis ClinC8C monoicous)
GGAGTTGCATTGGCTGCTGCAGCAGACAATCTTGTAGCTGCCAGGCTGGT
GGGGGGTGAAGTTCGTGACGACGGTGACGCGCTCACCCCGAGTGGTCGTG
GAAACAGAGTACACCGCCTTTTGCCACCCGCTCGAGCTATCTCCTGTGAC
CACGGCGTCGGGCTGCAACTTGAGCTTGAAGGCGTTGGTCGTTGGCTTCC
GTCGCCCCGCCGTTCGGTCAACGGCACTCGCTCGTACATAGCCGCGTCGT
GCGATATTTGCATTTCTTTGCATGTACCTGGCGTTGCTCAAGCACCTGCA
TTGTAAGGAGTTGCATTGGCTGCTGCAGCAGACAATCTTGTAGCTGCCAG
GCTGGTGGGGGGTGAAGTTCGTGACGACGGTGACGCGCTCACCCCGAGTG
GTCGTGGAAACAGAGTACACCGCCTTTTGCCACCCGCTCGAGCTATCTCC
TGTGACCACGGCGTCGGGCTGCAACTTGAGCTTGAAGGCGTTGGTCGTTG
GCTTCCGTCGCCCCGCCGTTCGGTCAACGGCACTCGCTCGTACATAGCCG
CGTCGTGCGATATTTGCATTTCTTTGCATGTACCTGGCGTTGCTCAAGCA
CCTGCATTGTAA back to top
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