mRNA_C-linearis_contig104.889.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.889.1 vs. uniprot
Match: A0A6H5KNR8_9PHAE (Smr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNR8_9PHAE) HSP 1 Score: 1024 bits (2647), Expect = 0.000e+0 Identity = 796/1166 (68.27%), Postives = 897/1166 (76.93%), Query Frame = 3 Query: 42 VMQIQTTAGRGEWRCHAEDNRGRALSFAVHSRSRPPR-SLLDSNTNLVSAASA-----PSAA--LCSIGRTSSVLRSFPCEGGWRGDDSGTRRRRVRARRGSAVCMMAQKPP-PVSAGRVGXXXXXXXXXXXXA-LENSRQTIAAIYACEDGGEWREAMEIVENIRKAGVKPTPSVYTALIRVLLRCGRSENAADVLDTAIAGDKGTRIAGQVGLDVMKQLIAAKSHQRVLAVYRLLRVRGYIGRGNRNRARVTTMATCYGARAAESLIAYRDVTDMYRLYLTDKEASGGGEGWEGLGRSLPCVVFRTLYKAKRFEEALEYLDDALASKNFRNTILINMAINCLGKTKRWEQAVKVFERMSTDLGHAPDSMTHSLVINSLALSGRSQEAIALFDRMCHATDPNIRANPSALTSSLNSAINACNIAGRWEDALGLVRRAEESGVKPDMISYSTLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLWKMGTPVEDRTYTVAFSVLARGCHVKLIAGLLHDMEAKGVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCKQGGDCERALALFDEMQTAPAEANIAPNQFTYNALISVLTFSGRLDLATEKFREMKEIGLQYDIVTFVNMILGFAREDRYKDVLVMFEGLEALMAANTRDGSLPLQVRNQIGYRNCYHEALKGCEVEGNWEMARRILRSLHLQNMDVDVVAYGAAIGAXXXXXXXXXXXXXXREMEAGDGASPNVXXXXXXXXXXXXXXXXXXXXXXLLKMINSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYIYEAIFARQQAENWDPSDGDAVNLHGYSQAVAKAAVRSGLSRILQRFLVAEKDPSMVQQFTIITGRGKHSRQAYEPVLRPVAQDMLLEEFDPPLPTHFDPTNDGRLQVRKEDILAWCMQESEKGKRAPAPADNVGSLKLRGVVDLKAAYDKAVSEAASTL---EEAGEEDASWSEVGWTRNANESEMV 3500
+++ + AGRG WR +FAV++++ PP + ++ +V A+A P+AA L GR ++VLRS EGG +S RRRRVRAR G +CM AQ+ P R A + ++ A + ACE G+WREAMEIVE RK PTP+VY AL+R+LLRCG++E AADVL+TAI D+ RI GQVGLDVMKQL+A K +RVL VYR+LRVRGYIGRG +RAR+TTM TCYGARAAE+LIA+RDV D+YRLYL D+EASGGGE WEGLGRSLPCVVFRTLYKAKR+EEAL YL+DALAS F NTILINM INCLGKTKRWE+AV VFERM T+LGH PDSMTH LVINSLA+SGR++EAI LFD MC +T+P ++NP ALT+ LNSAINAC+IAGRWEDAL + RRAE++GVKPDMISYSTLM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GLWK GTPV++R YT+AFSVLARG ++ +I L++DME +G XXXXXXXXXXXXXXXXXXXXXX A ALF+EMQ AP E NIAPNQFTYNALISV TFSGRLDLAT+KF EM E+GLQYDI TFVNMILGFAREDRYKDVLVMF+GLE+LM+AN+RDG + +Q +Q GYRNCYHE LKGCEVEGNW+MARRIL+S+HLQ+MDVDVVAYGAAIGA REMEA D SPNVXXXXXXXXXXXXXXXXXXXXXXLLKMINSG+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYIYE+IFARQQAENWDP+D DAV+LHGYSQAVAKAA+RSGLSR+LQR+LVAEKDPS+V+QFTIITGRG+HSRQA+EPVLRPVAQDMLLEEF+PPLPTHFDPTNDGRLQVRKEDILAWC +ESEKG+RAPAPAD+VGSLKLRGV DLK AYD+AV EAA+T +E ++A WS VGW+RNANESEMV
Sbjct: 1 MVEASSPAGRGVWRGQPLTVGRDVPAFAVNAKAPPPPYRMFGTDLPVVVGAAACGASTPAAAGGLRPTGRETAVLRSLAREGGSCRHESRLRRRRVRARGGETLCMTAQQQQEPQQRNRERRWLVPAAAVGVVAGASDYKRVEAQMSACEARGQWREAMEIVERSRKVTGTPTPTVYIALVRLLLRCGQAEAAADVLNTAIVDDRARRIPGQVGLDVMKQLVAGKCFKRVLDVYRMLRVRGYIGRGRNSRARLTTMVTCYGARAAEALIAWRDVQDIYRLYLADREASGGGEDWEGLGRSLPCVVFRTLYKAKRYEEALPYLEDALASNKFCNTILINMGINCLGKTKRWEEAVAVFERMPTELGHEPDSMTHGLVINSLAVSGRTEEAIELFDSMCKSTNPIFKSNPPALTACLNSAINACDIAGRWEDALDVARRAEKAGVKPDMISYSTLMNTLCHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAALFQEEQYHLVLEMFREMQLFGLSPDGFAIKHCLQACDITEVYDAAGGVVRGLWKTGTPVDERAYTIAFSVLARGAYIGVIEDLMNDMETRGETPGEGCYTSLITAYCKAELYEEAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQALFEEMQQAPPEENIAPNQFTYNALISVYTFSGRLDLATQKFTEMAEVGLQYDIRTFVNMILGFAREDRYKDVLVMFQGLESLMSANSRDGVV-VQPSSQTGYRNCYHETLKGCEVEGNWQMARRILKSMHLQSMDVDVVAYGAAIGACGRKGRWKEALEILREMEARDDVSPNVXXXXXXXXXXXXXXXXXXXXXXLLKMINSGIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYIYESIFARQQAENWDPADKDAVDLHGYSQAVAKAAIRSGLSRVLQRYLVAEKDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGRRAPAPADDVGSLKLRGVADLKLAYDRAVHEAAATATPGDEVKGKEAGWSGVGWSRNANESEMV 1165
BLAST of mRNA_C-linearis_contig104.889.1 vs. uniprot
Match: D7FIK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK7_ECTSI) HSP 1 Score: 714 bits (1843), Expect = 2.600e-238 Identity = 456/736 (61.96%), Postives = 513/736 (69.70%), Query Frame = 3 Query: 453 ACEDGGEWREAMEIVENIRKAGVKPTPSVYTALIRVLLRCGRSENAADVLDTAIAGDKGTRIAGQVGLDVMKQLIAAKSHQRVLAVYRLLRVRGYIGRGNRNRARVTTMATCYGARAAESLIAYRDVTDMYRLYLTDKEASGGGEGWEGLGRSLPCVVFRTLYKAKRFEEALEYLDDALASKNFRNTILINMAINCLGKTKRWEQAVKVFERMSTDLGHAPDSMTHSLVINSLALSGRSQEAIALFDRMCHATDPNIRANPSALTSSLNSAINACNIAGRWEDALGLVRRAEESGVKPDMISYSTLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLWKMGTPVEDRTYTVAFSVLARGCHVKLIAGLLHDMEAKGVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCKQGGDCERALALFDEMQTAPAEANIAPNQFTYNALISVLTFSGRLDLATEKFREMKEIGLQYDIVTFVNMILGFAREDRYKDVLVMFEGLEALMAANTRDGSLPLQVRNQIGYRNCYHEALKGCEVEGNWEMARRILRSLHLQNMDVDVVAYGAAIGAXXXXXXXXXXXXXXREMEAGDGASPNVXXXXXXXXXXXXXXXXXXXXXXLLKMINSGV 2660
ACE GG+WREAMEIVE RK PTP+VY AL+R+LLRCG++E AADVL+TAI D+ RI GQVGLDVMKQLIA K +RVL VYR+LRVRGYIGRG +RAR+TTM TCYGARAAE+LIA+RDV D+YRLYL D+EASGGGE WEGLGRSLPCVVFRTLYKAK +EEAL YL+DAL+SK F NTILINM INCLGKTKRWE+AV VFERM T+LGH PDSMTH LV+NSLALSGR++EAI LFD MC +T+P ++NP ALT+ LNSAINAC+IAGRWEDAL L RRAE++GVKPDMISYSTLM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GLWK GTPV++R YT+AFSVLARG ++ +I L++DME +G CK+G + ERA ALF+EMQ AP E NIAPNQFTYNALISV TFSGRLDLAT+KF EM E+GLQYDI TFVNMILGFAREDRYKDVLVMF+GLE L++AN RDG L +Q R+Q GYRNCYHE LKGCEVEGNW+MARRIL+S+HLQ+MDVDVVAYGAAIGA REMEA D + LLKMINSG+
Sbjct: 3 ACEAGGQWREAMEIVERSRKVTGTPTPTVYIALVRLLLRCGQAEAAADVLNTAIVDDRARRIPGQVGLDVMKQLIAGKCFKRVLEVYRMLRVRGYIGRGRNSRARLTTMVTCYGARAAEALIAWRDVQDIYRLYLADREASGGGEDWEGLGRSLPCVVFRTLYKAKHYEEALPYLEDALSSKKFCNTILINMGINCLGKTKRWEEAVAVFERMPTELGHEPDSMTHGLVVNSLALSGRTEEAIELFDSMCKSTNPIFKSNPPALTACLNSAINACDIAGRWEDALDLARRAEKAGVKPDMISYSTLMNTLCHAGECGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVIAALFQEEQYHLVLEMFREMQLFGLSPDGFAIKHCLQACDITEAYDAAAGVVRGLWKTGTPVDERAYTIAFSVLARGAYIGVIEDLMNDMETRGETPGEGCYTSLITAY----------------------------------CKRG-EWERAQALFEEMQQAPPEENIAPNQFTYNALISVYTFSGRLDLATQKFTEMAEVGLQYDIRTFVNMILGFAREDRYKDVLVMFQGLENLLSANARDGIL-VQPRSQTGYRNCYHETLKGCEVEGNWQMARRILKSMHLQSMDVDVVAYGAAIGACGRKGRWKEALEILREMEARDDVTGG---------------EWRKALHLLLKMINSGI 687
BLAST of mRNA_C-linearis_contig104.889.1 vs. uniprot
Match: D7FIK6_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK6_ECTSI) HSP 1 Score: 223 bits (567), Expect = 1.190e-63 Identity = 113/139 (81.29%), Postives = 124/139 (89.21%), Query Frame = 3 Query: 3093 AEKDPSMVQQFTIITGRGKHSRQAYEPVLRPVAQDMLLEEFDPPLPTHFDPTNDGRLQVRKEDILAWCMQESEKGKRAPAPADNVGSLKLRGVVDLKAAYDKAVSEAAS-TLEEAGEE--DASWSEVGWTRNANESEMV 3500
AEKDPS+V+QFTIITGRG+HSRQA+EPVLRPVAQDMLLEEF+PPLPTHFDPTNDGRLQVRKEDILAWC +ESEKG+RAPAPAD+VGSLKLRGV DLK AYD+AV EAA+ T G E A WS VGW+RNANESEMV
Sbjct: 8 AEKDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGRRAPAPADDVGSLKLRGVADLKLAYDRAVYEAAAATTPGDGVEGKQAGWSGVGWSRNANESEMV 146
BLAST of mRNA_C-linearis_contig104.889.1 vs. uniprot
Match: A0A835YST6_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST6_9STRA) HSP 1 Score: 200 bits (508), Expect = 2.540e-48 Identity = 279/889 (31.38%), Postives = 362/889 (40.72%), Query Frame = 3 Query: 876 GGGEGW---EGLGRSLPCVVFRTLYKAKRFEEALEYLDDALASKNFRNTILINMAINCLGKTKRWEQAVKVFERMSTDLGHAPDSMTHSLVINSLALSGRSQEAIALFDRMCHATDPNI-RANPSALTSSLNSAINACNIAGRWEDALGLVRRAEESGVKPDMISYSTLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GLWKMGTPVEDRTYTVAFSVLARGCH-----------------VKLIAGLLHDMEAKGVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCKQGGDCERALALFDEMQTAPAEANIAPNQFTYNALISVLTFSGRLDLATEKFREMKEIGLQYDIVTFVNMILGFAREDRYKDVLVMFEGLEALMAANTRDGSLPLQVRNQIGYRNCYHEALKGCEVEGNWEMARRILRSLHLQNMDVDVVAYGAAIGAXXXXXXXXXXXXXXREMEAGDGASPNVXXXXXXXXXXXXXXXXXXXXXXLLKMINSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------VYIYE-AIFARQQAENW--DPSDGDAVNLHGYSQAVAKAAVRSGLSRILQRFLVAEKDPSMVQQFTIITGRGKHSRQAYEPVLRPVAQDMLLEEFDPPLPTHFDPTNDGRLQVRKEDILAWCMQESEKGKRAPAPADNVGSLKLRGVVDLKAAYDKAVSE 3410
GGG G E L L CV FRTLYKAKR+E+ALE++ AL +RN IL NMAINC ++ +W +A++ F M + G PD+M++ + + +LFDRM D + +N ALT++LN+A+ AC +K D I+Y TLM +WK+G ++ F L + + LI GL+ DME + + CK D A+ L+ EM AP E N+APNQFTYNALI VLT+SGR+DLA E FR M E G YD++TF +MIL AL A Y A+ C W A +LR + GA + M+ G PN+ XXXXXXXXXXXXXXXXXXXX L+MIN+G+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VY+++ A+ A N DPS G V+LHGYS AVAKAAVRSGL + +++ +D S+V FTIITG G+HS+ A++P +RP Q MLLEE DPPL F P N GRL V+K +++ W ++ +K R PAD+ G+LKL+ DL+ ++ + +E
Sbjct: 325 GGGAGGAQAEDLA-GLACVAFRTLYKAKRYEQALEHVAVALGCDKYRNNILCNMAINCYVRSGQWHKAIQAFNMMRGEWGVDPDAMSYGITMXXXXXXXXXXXXXSLFDRMI---DLGLGHSNQLALTTALNTALGACFXXXXXXXXXXXXXXXXXXXIKSDAITYGTLMNTLAAGGQCAAALAVFDDMLALKLQPRLVACNYVLTKFAEHGAGAPAVGFLEAMQRARMKYTSVSYGAVISALYRQGDSRRLLQLFKEMVELYSLVPDRVTINEATTACKRIENWQALAEMTRSVWKVGGITDEDMLARIFGALGQAAYQHAVASMPILPRLRAGKTGLIKGLIQDMEHRNMTVTTGCYTALITSLYKMGRLNEALTALQSLRARGAPVGVAAYTSVINGCKWTKDWALAMELYHEMLAAPTELNLAPNQFTYNALIGVLTYSGRVDLAGEMFRRMAEEGHAYDVLTFTSMILV------------------ALSVA-------------------IYGAAMGACWRAMRWREALELLREME----------GGAPV------------------MDQGAPPKPNIVCXXXXXXXXXXXXXXXXXXXXXLRMINAGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLACYKGRSTFCHRAVAPADAAIARCRPDKALELFSYAQRYGGPLPSVQTISIIVELLEECGEFDKTVYVFDQAVAVGPGAANGSLDPSTGKTVDLHGYSLAVAKAAVRSGLQHLRRKYQSTGQDVSVVNDFTIITGIGRHSKLAFKPTVRPTVQAMLLEEQDPPLRAQFTPGNAGRLVVQKGELVNWLNKQGDKD-RVKTPADDAGNLKLKSASDLQQSFQERFTE 1143
BLAST of mRNA_C-linearis_contig104.889.1 vs. uniprot
Match: W7U458_9STRA (Pentatricopeptide repeat containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U458_9STRA) HSP 1 Score: 111 bits (278), Expect = 6.260e-21 Identity = 64/151 (42.38%), Postives = 90/151 (59.60%), Query Frame = 3 Query: 2940 VYIYEA-IFARQQAENWD-PSDGDA--VNLHGYSQAVAKAAVRSGLSRILQRFLVAEKDPSMVQQFTIITGRGKHSRQAYEPVLRPVAQDMLLEEFDPPLPTHFDPTNDGRLQVRKEDILAWCMQESEKGKRAPAPADNVGSLKLRGVVDL 3380
V+++E+ + ++E+++ SDG V+LHGYSQ VA+AAVR+GL R+ Q + K +++ F ITG G++S +EPVLRP Q ML E+FDPPLP N GRL VR D++ W +S K +PA G LKLR L
Sbjct: 1030 VHVFESSVVGYIRSEDYEMESDGPGMLVDLHGYSQPVARAAVRAGLKRLCQMYEQTGKREGVIKDFVFITGVGRNSEMPFEPVLRPAMQRMLNEDFDPPLPCETAENNPGRLIVRAHDLVEWLSAQSRKNLLSPAEMS--GILKLRSAEQL 1178
BLAST of mRNA_C-linearis_contig104.889.1 vs. uniprot
Match: I2CPG0_NANGC (Putative udp-glucosyltransferase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPG0_NANGC) HSP 1 Score: 78.2 bits (191), Expect = 9.620e-12 Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 3 Query: 2991 PSDGDAVNLHGYSQAVAKAAVRSGLSRILQRFLVAEKDPSMVQQFTIITGRGKHSRQAYEPVLRPVAQDMLLEEFDPPLPTHFDPTNDGRLQVRKEDILAW 3293
P+D A++LHG S VA AAVR L RI + + P+ V+ +I+G GK S + P LRP QDML+E++ PP+ + P N GR+ V +E +LAW
Sbjct: 181 PAD-HALDLHGMSAPVAAAAVRYALKRIREEWWRC--GPAAVKDLVLISGVGKGSLVPFRPTLRPAVQDMLVEQYYPPIDSTTQPGNAGRVVVGRESLLAW 278
BLAST of mRNA_C-linearis_contig104.889.1 vs. uniprot
Match: A0A7S2RYR1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYR1_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 8.090e-11 Identity = 43/110 (39.09%), Postives = 67/110 (60.91%), Query Frame = 3 Query: 2997 DGDAV--NLHGYSQAVAKAAVRSGLSRILQRFLVAEKDPSMVQQFTIITGRGKHSRQAYEPVLRPVAQDMLLEEFDPPLPTHFDPTNDGRLQVRKEDILAWCMQESEKGK 3320
DGDAV +LHG+S +A+ A+R+ L +L + + P++ + IITG+G++SR ++PVLR V Q ML+EEF PP+ + P N+GRL++ I W + K
Sbjct: 894 DGDAVLIDLHGFSAPLAQTAIRATLFDLLGQTTITH--PTLFPRVVIITGKGRNSR--HQPVLREVVQQMLVEEFYPPISSTTVPGNEGRLEIENSGIRKWVAYSMTRKK 999
BLAST of mRNA_C-linearis_contig104.889.1 vs. uniprot
Match: A0A4D9CXQ2_9STRA (Smr domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXQ2_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.110e-10 Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 3 Query: 2991 PSDGDAVNLHGYSQAVAKAAVRSGLSRILQRFLVAEKDPSMVQQFTIITGRGKHSRQAYEPVLRPVAQDMLLEEFDPPLPTHFDPTNDGRLQVRKEDILAW 3293
P+D A++LHG S VA AAVR L RI + + P+ V+ +I+G GK S + P LRP QDML+E++ PP+ + P N GR+ V +E +LAW
Sbjct: 1045 PAD-HALDLHGMSAPVAAAAVRYALKRIREEWWRC--GPAAVKDLVLISGVGKGSLVPFRPTLRPAVQDMLVEQYYPPIDSTTQPGNAGRVVVGRESLLAW 1142
BLAST of mRNA_C-linearis_contig104.889.1 vs. uniprot
Match: A0A7S3XTI1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTI1_HETAK) HSP 1 Score: 76.6 bits (187), Expect = 1.880e-10 Identity = 48/113 (42.48%), Postives = 62/113 (54.87%), Query Frame = 3 Query: 2979 ENWDPSDGDAV--NLHGYSQAVAKAAVRSGLSRILQRFLVAEKDPSMVQQFTIITGRGKHSRQAYEPVLRPVAQDMLLEEFDPPLPTHFDPTNDGRLQVRKEDILAWCMQESE 3311
EN D AV +LHGY VA A+R +S +L VA+ V+ IITG GKHS +PVLRP Q+ML+EEF PP+ T P N GR+ + + IL W +E
Sbjct: 415 ENSYSQDSPAVVIDLHGYVLPVAHMAIRRAMSEVLG---VAQHCQQSVKPIEIITGSGKHSINN-KPVLRPEIQNMLVEEFFPPIYTSTKPGNSGRIIITTDSILEWLSHTAE 523
BLAST of mRNA_C-linearis_contig104.889.1 vs. uniprot
Match: D7G9B6_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B6_ECTSI) HSP 1 Score: 70.5 bits (171), Expect = 4.650e-10 Identity = 46/129 (35.66%), Postives = 74/129 (57.36%), Query Frame = 3 Query: 3009 VNLHGYSQAVAKAAVRSGLSRILQRFLVAEKDPSMVQQFTIITGRGKHSRQAYEPVLRPVAQDMLLEEFDPPLPTHFDPTNDGRLQVRKEDILAWCMQESEKGKRAPAPADNVGSLKLRGVVDLKAAYD 3395
++LHG+S +A AAVR L + RF ++++ + + TIITG G+ S A++P++RP Q ML +EF PPL + + N GR+ V + I AW + + + KR P A +L+ + V AA +
Sbjct: 1 MDLHGHSLPLAHAAVRCALVEVW-RF--SQREGTALGDLTIITGMGRGSLHAFQPIIRPEVQRMLTDEFYPPLDSATEVGNTGRVVVSAKTIEAW-LDHNVEAKR-PVMARLAAALQKKASVAAAAAEE 124 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.889.1 >prot_C-linearis_contig104.889.1 ID=prot_C-linearis_contig104.889.1|Name=mRNA_C-linearis_contig104.889.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1153bp MQIQTTAGRGEWRCHAEDNRGRALSFAVHSRSRPPRSLLDSNTNLVSAASback to top mRNA from alignment at C-linearis_contig104:236347..250056+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.889.1 ID=mRNA_C-linearis_contig104.889.1|Name=mRNA_C-linearis_contig104.889.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=13710bp|location=Sequence derived from alignment at C-linearis_contig104:236347..250056+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:236347..250056+ >mRNA_C-linearis_contig104.889.1 ID=mRNA_C-linearis_contig104.889.1|Name=mRNA_C-linearis_contig104.889.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=6918bp|location=Sequence derived from alignment at C-linearis_contig104:236347..250056+ (Chordaria linearis ClinC8C monoicous)back to top |