Homology
BLAST of mRNA_C-linearis_contig104.888.1 vs. uniprot
Match:
D7FIK9_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK9_ECTSI)
HSP 1 Score: 79.0 bits (193), Expect = 2.980e-14
Identity = 51/133 (38.35%), Postives = 72/133 (54.14%), Query Frame = -2
Query: 70 MYVCDLAGPERQDRAALANDAGXXXXXXXXDHPELRKIEATHINTDTTALFRAWKLVRGGAKSASYRARTLTRVLKGLFVRPRDSPH-------------VNCVMMVCVNPAASEYGETNKVLKNSQISSTVL 429
+++ DLAG ERQ R+ + K EA +IN D + LF +K ++ GA S R RTLT VL+ +FV+P + ++CVM+V V+PAASEYGET KVL N ++SS V+
Sbjct: 264 LFLVDLAGSERQHRS------------------QSDKAEALNINLDNSDLFAKFKEMKNGAASVVCRTRTLTGVLRRVFVKPTGTSSXXXXXXXXXXXXGMSCVMIVAVHPAASEYGETQKVLSNLRLSSKVV 378
BLAST of mRNA_C-linearis_contig104.888.1 vs. uniprot
Match:
A0A6H5KBC0_9PHAE (Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBC0_9PHAE)
HSP 1 Score: 79.0 bits (193), Expect = 3.230e-14
Identity = 52/136 (38.24%), Postives = 72/136 (52.94%), Query Frame = -2
Query: 70 MYVCDLAGPERQDRAALANDAGXXXXXXXXDHPELRKIEATHINTDTTALFRAWKLVRGGAKSASYRARTLTRVLKGLFVRPRDS----------------PHVNCVMMVCVNPAASEYGETNKVLKNSQISSTVL 429
+++ DLAG ERQ R+ + K EA +IN D + LF +K ++ GA S R RTLT VL+ +FV+P + +NCVM+V V+PAASEYGET KVL N ++SS V+
Sbjct: 265 LFLVDLAGSERQHRS------------------QSDKAEALNINLDNSDLFAKFKEMKNGAASVVCRTRTLTGVLRRVFVKPTGTYSSXXXXXXXXXXXXXXGMNCVMIVTVHPAASEYGETQKVLSNLRLSSKVV 382
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.888.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.98e-14 / Id = 38.35 Expect = 3.23e-14 / Id = 38.24 Sequence D7FIK9_ECTSI A0A6H5KBC0_9PHAE
Match Name E-value Identity Description
D7FIK9_ECTSI 2.980e-14 38.35 Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more] A0A6H5KBC0_9PHAE 3.230e-14 38.24 Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 456 Cds size 414 Stop 1 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927381.4361165-CDS-C-linearis_contig104:233337..233751 1622927381.4361165-CDS-C-linearis_contig104:233337..233751 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 233338..233751 + 1690879666.8812788-CDS-C-linearis_contig104:233337..233751 1690879666.8812788-CDS-C-linearis_contig104:233337..233751 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 233338..233751 +
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927381.4486125-UTR-C-linearis_contig104:233751..233791 1622927381.4486125-UTR-C-linearis_contig104:233751..233791 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 233752..233791 + 1690879666.8907106-UTR-C-linearis_contig104:233751..233791 1690879666.8907106-UTR-C-linearis_contig104:233751..233791 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 233752..233791 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.888.1
>prot_C-linearis_contig104.888.1 ID=prot_C-linearis_contig104.888.1|Name=mRNA_C-linearis_contig104.888.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=138bp
TAGTSTAARSLALADRGSLFERGQHRRRDLRVLEHLVGFAVLGRRGVHAH back to top mRNA from alignment at C-linearis_contig104:233338..233791+
Legend: CDS polypeptide UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.888.1 ID=mRNA_C-linearis_contig104.888.1|Name=mRNA_C-linearis_contig104.888.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=454bp|location=Sequence derived from alignment at C-linearis_contig104:233338..233791+ (Chordaria linearis ClinC8C monoicous)ACCGCCGGCACCAGCACGGCTGCTCGTTCTCTGGCGCTTGCGGATCGAGG
GTCCCTCTTCGAGCGCGGCCAGCACCGTCGACGAGATCTGCGAGTTCTTG
AGCACCTTGTTGGTTTCGCCGTACTCGGACGCCGCGGGGTTCACGCACAC
CATCATGACGCAGTTCACGTGGGGCGAGTCCCTTGGCCTGACGAACAGGC
CCTTCAGCACGCGCGTCAGTGTGCGCGCGCGGTAGGACGCGGACTTGGCG
CCGCCCCGCACAAGCTTCCAGGCGCGGAACAGCGCGGTCGTGTCCGTGTT
GATGTGCGTCGCCTCGATCTTCCGCAGCTCGGGGTGGTCGCCGCCGCCGC
CGCTGCCACCACCGCCGGCGTCATTGGCCAGCGCCGCCCTGTCCTGGCGC
TCGGGGCCGGCTAG GTCGCAGACGTACATGACCGGGTCGCTCGGCCGCAG
GTCC back to top Coding sequence (CDS) from alignment at C-linearis_contig104:233338..233791+
>mRNA_C-linearis_contig104.888.1 ID=mRNA_C-linearis_contig104.888.1|Name=mRNA_C-linearis_contig104.888.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at C-linearis_contig104:233338..233791+ (Chordaria linearis ClinC8C monoicous) back to top