mRNA_C-linearis_contig104.888.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.888.1 vs. uniprot
Match: D7FIK9_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK9_ECTSI) HSP 1 Score: 79.0 bits (193), Expect = 2.980e-14 Identity = 51/133 (38.35%), Postives = 72/133 (54.14%), Query Frame = -2 Query: 70 MYVCDLAGPERQDRAALANDAGXXXXXXXXDHPELRKIEATHINTDTTALFRAWKLVRGGAKSASYRARTLTRVLKGLFVRPRDSPH-------------VNCVMMVCVNPAASEYGETNKVLKNSQISSTVL 429
+++ DLAG ERQ R+ + K EA +IN D + LF +K ++ GA S R RTLT VL+ +FV+P + ++CVM+V V+PAASEYGET KVL N ++SS V+
Sbjct: 264 LFLVDLAGSERQHRS------------------QSDKAEALNINLDNSDLFAKFKEMKNGAASVVCRTRTLTGVLRRVFVKPTGTSSXXXXXXXXXXXXGMSCVMIVAVHPAASEYGETQKVLSNLRLSSKVV 378
BLAST of mRNA_C-linearis_contig104.888.1 vs. uniprot
Match: A0A6H5KBC0_9PHAE (Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBC0_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 3.230e-14 Identity = 52/136 (38.24%), Postives = 72/136 (52.94%), Query Frame = -2 Query: 70 MYVCDLAGPERQDRAALANDAGXXXXXXXXDHPELRKIEATHINTDTTALFRAWKLVRGGAKSASYRARTLTRVLKGLFVRPRDS----------------PHVNCVMMVCVNPAASEYGETNKVLKNSQISSTVL 429
+++ DLAG ERQ R+ + K EA +IN D + LF +K ++ GA S R RTLT VL+ +FV+P + +NCVM+V V+PAASEYGET KVL N ++SS V+
Sbjct: 265 LFLVDLAGSERQHRS------------------QSDKAEALNINLDNSDLFAKFKEMKNGAASVVCRTRTLTGVLRRVFVKPTGTYSSXXXXXXXXXXXXXXGMNCVMIVTVHPAASEYGETQKVLSNLRLSSKVV 382 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.888.1 >prot_C-linearis_contig104.888.1 ID=prot_C-linearis_contig104.888.1|Name=mRNA_C-linearis_contig104.888.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=138bp TAGTSTAARSLALADRGSLFERGQHRRRDLRVLEHLVGFAVLGRRGVHAHback to top mRNA from alignment at C-linearis_contig104:233338..233791+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.888.1 ID=mRNA_C-linearis_contig104.888.1|Name=mRNA_C-linearis_contig104.888.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=454bp|location=Sequence derived from alignment at C-linearis_contig104:233338..233791+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:233338..233791+ >mRNA_C-linearis_contig104.888.1 ID=mRNA_C-linearis_contig104.888.1|Name=mRNA_C-linearis_contig104.888.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at C-linearis_contig104:233338..233791+ (Chordaria linearis ClinC8C monoicous)back to top |