mRNA_C-linearis_contig104.880.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.880.1 vs. uniprot
Match: A0A6H5JS06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS06_9PHAE) HSP 1 Score: 985 bits (2546), Expect = 0.000e+0 Identity = 682/1340 (50.90%), Postives = 808/1340 (60.30%), Query Frame = 3 Query: 171 GRAGATKRRQIVEISSDDDGSCNDGAELQVDLDIVNLCNSDD--DSDADSXXXNEIPXXXXXXXXXXRTLPNGSNGNISSGKPAPAARKPVPKFTGGQLAIPPFRGGRGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGGENFIPLTRAPAPPRS------------SAASLSSRKGKGSS---------QA-----VGGRPSSSAMDVDLDDVEVQVXXXXXGATALPAPSRGQPLPCTQANAKLKGSRGRYFEREGGGGSSDSRAPAGNGQAQPSPSGQPAALVASPRRTETGEDTTRTPKPMTMSARLWPSSSRFYRAVLRWVYVPEDLSLEEDAQSAERTADLPVVPTEFATLLDYQKTMSRLVLKETLAVLRQEFGSSKARRKFLMVKGEVYSSCLLDVDEGSEDNTNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGRLFSLKVRLELPPAPSHTRDKKDQQGPKSPFWGNELVALSSPRWKTSGGSAFLGVVQSWDPVYDKQSKRPFQKCAVLIRLLVCASPAGXXXXXXQGGWLPLEHVQECLGMRKGSAGVPVTLSSGGASLMTACREFQAVMSVSGLPETVRRCLLDPSVSKGS--KRAAVVT---APRERSGSSDGRAEMGSSGRGGEGLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDTDAAQGSGLMM-----------------PPPSNVPAELWGSLLQVFNRSQVQAIRKVVEGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGHSREGLGASRGPGAKVTVGSSVSTKAEKNRAAEGGGEKKGERIVSPLENASTRVLIVAPSNAAVDELVLRLCQDGVLGKDGRVRFPKVVRVGGGRVDRGLDGEAGGXXXXXXXXXXXXXXRGKDGLRSKVVERVSLERLVDDRIKSFGGNVQKNRLDLLLQAEVVCATLSGSGSQTLVEAVMLSAQGRAKASGKAKPRGRKWEGSRLVGGXXXXXAVLGFDAVVMDEAAQAVEPSSVIPLKFNPRAVVMVGDPAQLPSTIFSQEAARANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASSRFYNGLLSRSAPAVTKSSHGQGFHGAPRFAPYLFHNVSGGRLKRGGEGSTASTSLSNPVEVEYISSLLNDLVNSFPGTNFNGRVGIIAPYRGQIQALERGMWSTGLRRDGVEISTVDGFQGREKDIMIFSCVRAPEERPSGDSTARPVYGGIGFLDDWRRLNVAITRAKFAMWIVGHSGVLKQSKEWRELINDSKQRGAFVDSS-PGPSAKHRGNGSDGTQRTSRGT 4037
G G TKRRQI+EISSD + DGAEL DLDIV+LCN+ D DSDADS ++ P +PNG++ + + + K PK G +L IPPFRG G G E +P R+ A AS + G G+ QA + G S S D D D + + A A P+ P + A KGS Y +R G G A +T + + P +S RLWPS+SRFYRA LRWVY P+D S+EEDAQSA+R A+L +PTEFA+LLDYQKTMS+LVLKE +A L+QE + +R LMV+GEV ++ LLDVD + G DG+L+SL+V+L LP P++ K P SPF G ELV LSSPRW+ S +A LGVVQ+WDPVYDK S++P K V IR+LVC S G +GGWLP + +QECLG + GVPVT+S G SL+TACREFQAVMS+ LPE V L++PS + + R V+ P R G G XXXXXXXXXXXXXXXXXXXXXXXXXXXX P PS VP +LW SL+Q FN SQVQA+RKVV+GSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFP GHS EG G GAKVT+GSS+S K K + + G++K RIVSPLE AS R+LIVAPSNAAVDELVLRLCQ+GV G DGRVRFP+VVRVGG R D G+ G GKDG+ S VVERVSLERLV +R++ + RL +LL+AEVVCATLSGSGS LVE VM+S Q A K K +GRK + GG A+LGFDAVVM AVEPSS+IPLK+NPRAV+MVGDPAQLP+TIFS++A RANY QSLF RLQRGGHPK MLDTQYRMHPDIASFAS+RFY+GLL RSAP VT++SHGQ FH PRFAPYLFHNVSGGRLKRGGEG + SLSNP EV YI+SLL+DL+ +FPGT+FNG++G+IAPYR QI+AL+RGMWSTGLR DGVE+STVDGFQGREKDIMIFSCVRAPE + SGDS + GG+GFLDDWRRLNVAITRAKFAMWIVGH+GVLKQS +WRELINDSK+R AF+DSS PG ++ R +GS+ TSRG+
Sbjct: 64 GSQGTTKRRQILEISSDSE----DGAEL--DLDIVDLCNTSDEEDSDADSSD-DDCPAKSSASRD---AIPNGTHDSAVGSQQSAVVGKCAPKGMG-ELTIPPFRG---------------------------------------RAKEVRREANMGAGAELVLPPARSGAAXXXXXXXXXXXXXXXGIASRGAEAGAGAXXXXXXXXXXQAHSVVNLAGDSSDSGDDCDGDGGKTAIPLTKSAAQA---PASSLPRSTSSAVNLTKGSSDNYGDRIRGEGFXXXXXXXXXXXAW----------------YDTNQQKKQKPS---LSTRLWPSASRFYRAALRWVYCPKDCSIEEDAQSAQRMANLVPIPTEFASLLDYQKTMSQLVLKEAVAGLQQESATKMSRGNVLMVRGEVETANLLDVDGENMGRKKGEGGEPSSASAPLPPPSVSSS---------------------------DGKLYSLRVKLILPTVPAYGNGK--DYVPASPFRGQELVYLSSPRWRASS-NALLGVVQAWDPVYDKLSRKPSTKTVVKIRILVCVSSTGGDGVGGRGGWLPFKDIQECLG--NDNCGVPVTISGAG-SLVTACREFQAVMSLPELPERVHEFLVNPSKASTTLLPRLFVINHLPVPSSRGGREAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPPGPSGVPPKLWMSLIQKFNSSQVQAMRKVVDGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPSGHSSEG--EVSGSGAKVTIGSSISGKG-KGKKGKQKGQQKAARIVSPLEKASPRILIVAPSNAAVDELVLRLCQEGVPGVDGRVRFPRVVRVGGPRADDERSGDVDGRGGSGG---------GKDGMTSTVVERVSLERLVTERMERTKCSAVSARLGILLRAEVVCATLSGSGSHILVETVMMSMQLAATKLAKTK-KGRKKAKAAGHGGQ----AILGFDAVVM-----AVEPSSMIPLKYNPRAVIMVGDPAQLPATIFSKDAQRANYAQSLFLRLQRGGHPKTMLDTQYRMHPDIASFASTRFYSGLL-RSAPTVTEASHGQVFHRLPRFAPYLFHNVSGGRLKRGGEGYGGAKSLSNPTEVSYITSLLHDLITTFPGTDFNGKIGVIAPYRNQIRALQRGMWSTGLRHDGVEVSTVDGFQGREKDIMIFSCVRAPELQRSGDSGSSS-GGGVGFLDDWRRLNVAITRAKFAMWIVGHAGVLKQSTDWRELINDSKKRDAFIDSSNPGATSSGRNSGSN----TSRGS 1270
BLAST of mRNA_C-linearis_contig104.880.1 vs. uniprot
Match: D8LE51_ECTSI (SEN1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE51_ECTSI) HSP 1 Score: 981 bits (2537), Expect = 0.000e+0 Identity = 587/999 (58.76%), Postives = 685/999 (68.57%), Query Frame = 3 Query: 1071 ARLWPSSSRFYRAVLRWVYVPEDLSLEEDAQSAERTADLPVVPTEFATLLDYQKTMSRLVLKETLAVLRQEFGSSKARRKFLMVKGEVYSSCLLDVDEGSEDNTNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGRLFSLKVRLELPPAPSHTRDKKDQQGPKSPFWGNELVALSSPRWKTSGGSAFLGVVQSWDPVYDKQSKRPFQKCAVL-IRLLVCASPAGXXXXXXQGGWLPLEHVQECLGMRKGSAGVPVTLSSGGASLMTACREFQAVMSVSGLPETVRRCLLDPSVSKGSKRAAVVTAPRERSGSSDGRAEMGSSGRGGEGLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDTDAAQGSGLMMPPP--SNVPAELWGSLLQVFNRSQVQAIRKVVEGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGHSREG-LGASRGPGAKVTVGSSVSTKAEKNRAAEGGGEKKGERIVSPLENASTRVLIVAPSNAAVDELVLRLCQDGVLGKDGRVRFPKVVRVGGGRVDRGLDGEAGGXXXXXXXXXXXXXXRGKDGLRSKVVERVSLERLVDDRIKSFGGNVQKNRLDLLLQAEVVCATLSGSGSQTLVEAVMLSAQGRAKASGKAKPRGRKWEGSRLVGGXXXXXAVLGFDAVVMDEAAQAVEPSSVIPLKFNPRAVVMVGDPAQLPSTIFSQEAARANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASSRFYNGLLSRSAPAVTKSSHGQGFHGAPRFAPYLFHNVSGGRLKRGGEGSTASTSLSNPVEVEYISSLLNDLVNSFPGTNFNGRVGIIAPYRGQIQALERGMWSTGLRRDGVEISTVDGFQGREKDIMIFSCVRAPEERPSGDSTARPVYGGIGFLDDWRRLNVAITRAKFAMWIVGHSGVLKQSKEWRELINDSKQRGAFVDSS-PGPSAKHRGNGSDGTQRTSRGTSSRGS 4052
ARLWPS+SRFYRA LRWVY P+D S+EEDAQSA+R A+L VPTEFA+LLDYQKTMS+LVLKE +A L+QE + +R LMV+GEV ++ LLDVD G DG+L+SL+V+L LP P++ K P SPF G ELV+L+SP W+ S +A LGVVQ+WDPVYDK S++P K V+ IR+LVC S G +GGWLPL+ +QECLG + GVPVT+SS G SL+TACREFQAVMS+ LPE V LL+PS + + V SS G E G XXXXXXXXXXX D PPP S+VP +LW SL+Q FN SQVQA+RKVV+GSPSGFTLLQGPPGTGKTRTIMGIVGVLLAG CPFP GH+ EG G + G GAKVT+GSS+S K K +K RIVSPLE AS R+LIVAPSNAAVDELVLRLCQ+GV G DGRVRFP+VVRVGG R D G G G+DG+ S +VE VSLERLV +R++ + RL +LL+AEVVCATLSGSGS LVE VM+S Q A K K +K + + G +LGFDAVVMDEAAQAVEPSS+IPLK+NPRAV+MVGDPAQLP+TIFS++A RANY QSLF RLQRGGHPK MLDTQYRMHPDIASFAS+RFY+GLL RSAP VT++SHGQ FH PRFAPYLFHNVSGGRLKRGGEG + SLSNP EV YI+SLL DL+ +FPGT+FNGR+G+IAPYR QI+AL+RGMWSTGLR DGVE+STVDGFQGREKDIMIFSCVRAPE + SGDS + GGIGFLDDWRRLNVAITRAKFAMWIVGH+GVLKQS +WRELINDSK+R AF+DSS PG ++ R +GS T+RG++ GS
Sbjct: 166 ARLWPSASRFYRAALRWVYCPKDCSIEEDAQSAQRMANLVPVPTEFASLLDYQKTMSQLVLKEAVAGLQQESATKMSRGNVLMVRGEVETANLLDVDGEKRAGKKGKGGQPSSASAPLPPPSVSSS---------------------------DGKLYSLRVKLILPTVPAYGNGK--DYVPASPFRGQELVSLTSPMWRASS-NALLGVVQAWDPVYDKLSRKPSTKTVVVKIRILVCVSSTGGDGVGGRGGWLPLKDIQECLG--NDNCGVPVTISSAG-SLVTACREFQAVMSLPELPERVHEFLLNPSKAPTTLLPRFVVINHLPVSSSRGGREAGGX-------------------------XXXXXXXXXXXXDLSPPSSVYTPXPPPGPSSVPPKLWMSLIQKFNSSQVQAMRKVVDGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGACPFPSGHNSEGGEGGASGSGAKVTIGSSISGKG-KXXXXXXXXXQKAARIVSPLEKASPRILIVAPSNAAVDELVLRLCQEGVPGVDGRVRFPRVVRVGGPRADGERSGTVDGRGGSG----------GRDGVTSTMVEGVSLERLVTERMERTKCSAVSARLGILLRAEVVCATLSGSGSHILVETVMMSMQLAATKLSKTKKGQKKAKAAGREG-----QTILGFDAVVMDEAAQAVEPSSMIPLKYNPRAVIMVGDPAQLPATIFSKDAQRANYAQSLFLRLQRGGHPKTMLDTQYRMHPDIASFASTRFYSGLL-RSAPTVTEASHGQVFHRLPRFAPYLFHNVSGGRLKRGGEGYGGAKSLSNPTEVSYITSLLQDLITTFPGTDFNGRIGVIAPYRNQIRALQRGMWSTGLRHDGVEVSTVDGFQGREKDIMIFSCVRAPELQRSGDSGSSS-GGGIGFLDDWRRLNVAITRAKFAMWIVGHAGVLKQSTDWRELINDSKKRNAFIDSSNPGATSSGRNSGS----TTTRGSNVGGS 1084
BLAST of mRNA_C-linearis_contig104.880.1 vs. uniprot
Match: A0A7S3MCA3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCA3_9STRA) HSP 1 Score: 352 bits (902), Expect = 6.430e-96 Identity = 316/903 (34.99%), Postives = 425/903 (47.07%), Query Frame = 3 Query: 1632 GNELVALSSPRWKTSGGSAFLGVVQSWDPVYD-------------------------KQSKRPFQKCAVLIRLLVCASPA-GXXXXXXQGGWLPLEHVQECLGMRKGSAGVPVTLSSGGASLMTACREFQAVMSVSGLPETVRRCLLDPSVSKGSKRAAVVTAPRERSGSSDGRAEMGSSGRGGEGLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDTDAAQGS--GLMMPP---PSNVPAELWGSLLQVFNRSQVQAI----RKVVEG--------SPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPP-GHSREGLGASRGPGAKVTVG-SSVSTKAEKNRAAEGGGEKKGERIVSPLENAS--TRVLIVAPSNAAVDELVLRLCQDGVLGKDG-RVRFPKVVRVGGGRVDR----GLDGEAGGXXXXXXXXXXXXXXRGKDGLRSKVVERVSLERLVDDRIKSFGGN-----------VQKNRLDLLLQAEVVCATLSGSGSQTLVEAVMLSAQGRAKASGKAKPRGRKWEGSRLVGGXXXXXAVLGFDAVVMDEAAQAVEPSSVIPLKFNPRAVVMVGDPAQLPSTIFSQEAARANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASSRFYNGLLSRSAPAVTKSSHGQGFHGAP--RFAPYLFHNVSGGRLKRGGEGSTASTSLSNPVEVEYISSLLNDLVNSFPGTNFNGRVGIIAPYRGQIQAL-----ERGMWSTGLRRDGV--------EISTVDGFQGREKDIMIFSCVRAPEER---------------------------------------------PSGDSTARPVYG----GIGFLDDWRRLNVAITRAKFAMWIVGHSGVLKQSKEWRELINDSKQRGAF 3959
G +L+ L SP+W LG++Q WDP YD K + P Q ++ +LVC G GGW + +G + G ++MT RE QA+MS+ + ++++ +L S A R+ ++D A G+S G XXXXXXXXXXXXXXX D + LM P P NVP LW +L + +N SQ++AI R+ E + + +LLQGPPGTGKTRTI+GIV V LAG G +R GAS T G +S EK + GG + ++ TRVLI APSN AVDE+V RL GVL G R+ V+R+G D G+D D ++VER +L+ LV++R ++ + + R +L A+VVC+TLSG+GSQ ++E V+ R+ G FDAV++DEAAQAVEPSS+IP K+NP+AVV+VGDP QLP+T+FS A +A Y QSLFQRLQ G+P +ML+TQYRMHP IA + S R+Y L + +T SH +H P +F P+LFHNV +T TS SN E Y+ L +LV +P + G +GIIAPYR Q + L ER + R GV EISTVDGFQGREK+I+IFSCVRAP R S +T+ V G GIGFL +W+RLNVAITR+++A+WIVG+S VL EWR L++ SK++ +F
Sbjct: 320 GGDLMVLHSPQWS----HPLLGIIQPWDPDYDIKYGINFSVNQSTYISTQQPARDGGKLGQPPLQ----VVNILVCVDQGDGLSGSADIGGWATQGSIVPGVGFSMTAIG----------NVMTYIRECQALMSLKLINKSLQNMVLTGCFSPNYTAAL-------RAATADQSAADGTSSGYGSSXXXXXXXXXXXXXXXXXDGGIAFASHKPRADKVNRVLSPRRALMEQPINCPENVPMPLWLALRRQYNESQLRAICMVSRRFQEKEYHTGQSTTEASLSLLQGPPGTGKTRTILGIVSVFLAGALNLTAQGTTRIVAGASL---YGETAGEASTKWSDEKLQRPRGGSISHTNTVNGDGQSGGKRTRVLICAPSNTAVDEVVYRLITQGVLDSQGKRMNDLSVIRIGQPCRDEYQRTGVD--------TFGRSKHHQHLSASDENMVRIVERATLDTLVEERRRTLMASDTRAQAGATLKIADIRKQILEGADVVCSTLSGAGSQPMLEVVL-----------------------RITG--------FKFDAVIIDEAAQAVEPSSLIPFKYNPQAVVLVGDPCQLPATVFSATAKKAGYSQSLFQRLQIAGYPVLMLETQYRMHPAIAEYPSLRYYQSRLITGSQLITSDSHKMPYHNDPSGKFRPFLFHNVPWSTE------TTEGTSTSNRDEARYVVDLFEELVTKYP--DHRGGIGIIAPYRAQRRLLNTLFRER-FGNQHQHRRGVPPIFDLDTEISTVDGFQGREKNIVIFSCVRAPTNRNHYFNTRHLHTSNSTASLEGGAEEAEVAVEVAGREDAQLETQSNVSSSSATSSTVPGASFRGIGFLKEWQRLNVAITRSRYALWIVGNSDVLSADSEWRHLVDYSKKKNSF 1146
BLAST of mRNA_C-linearis_contig104.880.1 vs. uniprot
Match: A0A7S0SVB8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SVB8_9STRA) HSP 1 Score: 314 bits (805), Expect = 2.400e-88 Identity = 218/574 (37.98%), Postives = 308/574 (53.66%), Query Frame = 3 Query: 2268 LWGSLLQVFNRSQVQAIRKVV---EGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGHSREGLGASRGPGAKVTVGSSVSTKAEKNRAAEGGGEKKGERIVSPLENASTRVLIVAPSNAAVDELVLRLCQDGVLGKDG-RVRFPKVVRVGGGRVDRGLDGEAGGXXXXXXXXXXXXXXRGKDGLRSKVVERVSLERLVDDRIKSFGGNVQKN-------RLDLLLQAEVVCATLSGSGSQTLVEAVMLSAQGRAKASGKAKPRGRKWEGSRLVGGXXXXXAVLGFDAVVMDEAAQAVEPSSVIPLKFNPRAVVMVGDPAQLPSTIFSQEAARANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASSRFYNGLLSRSAPAVTKSSHGQG--FHGAPRFAPYLFHNVSGGRLKRGGEGSTASTSLSNPVEVEYISSLLNDLVNSFPGTNFNGRVGIIAPYRGQIQALERGMWSTGLRRDGVEISTVDGFQGREKDIMIFSCVRAPEERPSGDSTARPVYGGIGFLDDWRRLNVAITRAKFAMWIVGHSGVLKQSKEWRELINDSKQR 3950
+W L ++N +Q+QAI+KV+ S LLQGPPGTGKT TI+GI+G LL G++ + G KV + +S A + +S L R+L+ APSN AVDEL+ RL + GV+G DG + +VRVG +++ D + + ++V+E++SLE LV+++ K K R +L +A++VC TLSG+GSQ L+E V+ GK G K FDA+++DEAAQ+ EPS++IP KF+P V+MVGDP QLP+ I S+++ NY QSLF+RLQ+ G ML+TQYRMHP IA ++S RFYN L + + + FH + +F P++FHNV +K G + +TS N E YI+ + +L +P N +GIIAPY Q + L++ + VEIST+DGFQGREKDI+ FSCVRAP + D A IGFL + +RLNVAITRA+ A+WIVGH+ L+ EW +L+N K R
Sbjct: 170 MWNKLNTLYNDTQLQAIKKVIYYRNLSDPNILLLQGPPGTGKTHTILGIIGALLT-------GNTLDKTGK------KVIINNSKKILANNSY-----------NNISDLSIKKPRILLCAPSNTAVDELLYRLYKQGVIGLDGEKSNDLSIVRVG--FINKKKD-------FLTSKRHSNSSNQEMKSVINEVIEKLSLETLVENKRKYLNSLESKVSWTLSDIRKSILDRADIVCCTLSGAGSQALIEVVI----------GKT---GFK------------------FDAIIIDEAAQSTEPSALIPFKFDPHLVIMVGDPCQLPAVILSKKSKECNYHQSLFERLQKSGVEMTMLNTQYRMHPYIADYSSFRFYNNQLLTDISLLENAERVRPYYFHPSEKFKPFVFHNV----IK--GYQTIENTSYKNIPEALYIAEMYQELKRFYPHCLDN--IGIIAPYSAQRKLLKQIFKERFGYKCNVEISTIDGFQGREKDIIFFSCVRAPNKSYRNDKNAD---NNIGFLKEKQRLNVAITRARNALWIVGHADTLRGDSEWEQLLNYMKAR 668
BLAST of mRNA_C-linearis_contig104.880.1 vs. uniprot
Match: A0A8J2WTU9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WTU9_9STRA) HSP 1 Score: 305 bits (782), Expect = 2.510e-84 Identity = 223/573 (38.92%), Postives = 293/573 (51.13%), Query Frame = 3 Query: 2259 PAELWGSLLQVFNRSQVQAIRKVVEGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGHSREGLGASRGPGAKVTVGSSVSTKAEKNRAAEGGGEKKGERIVSPLENASTRVLIVAPSNAAVDELVLRLCQDGVLGKDGRVRFPKVVRVGGGRVDRGLDGEAGGXXXXXXXXXXXXXXRGKDGLRSKVVERVSLER--LVDDRIKSFGGNVQKNRLDLLLQAEVVCATLSGSGSQTLVEAVMLSAQGRAKASGKAKPRGRKWEGSRLVGGXXXXXAVLGFDAVVMDEAAQAVEPSSVIPLKFNPRAVVMVGDPAQLPSTIFSQEAARANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASSRFYNGLLSRSAPAVTKSSHGQG----FHGAPRFAPYLFHNVSGGRLKRGGEGSTASTSLSNPVEVEYISSLLNDLVNSFPGTNFNGRVGIIAPYRGQIQALERGMWSTGLRRDGVEISTVDGFQGREKDIMIFSCVRAPEERPSGDSTARPVYGGIGFLDDWRRLNVAITRAKFAMWIVGHSGVLKQSKEWRELINDSKQRGAF 3959
PA LW +L N SQ AI + +P F L+QGPPGTGKTRTI+G+ LL G PP R RGPG + S S +A A GG + ER S R+L+ APSNAAVDE+ R ++GV G DGR+R ++ RVG GG R++ +L R +D + G + LLQA++V ATLSG +L EA A +P FDAVV+DEAAQAVEPS+ IPL++ P+ VV+VGDPAQL +T+ S RA YGQSLF+RL RGGHP +L TQYRM D+ S RFY+GLL+ SA VT SH G AP FH+V+ G +R S A N E + L D+V + T+ + VG++APYR Q+ L + G+ D VE+STVD FQGREKD++I SCVRAP +S IGFL D RLNV ++RA+ A W+VGH+ L+++ +WR L+ +++ GA
Sbjct: 209 PAPLWQALRSSSNASQFAAIAAGADATP--FALVQGPPGTGKTRTILGVCAALLHGDLAEPPPPQRS----RRGPG---MLSSQTSMRATTRINAPGGLLQAAER--------SRRILVTAPSNAAVDEVAARFVREGVPGPDGRIRRVRLCRVG----------TVGGSH------------------RTEATPHEALLRGYTLDVLAERQAGRRAERVTSALLQADIVVATLSGCAHSSLAEAQQSIAP---------EPL---------------------FDAVVVDEAAQAVEPSTYIPLRYGPKRVVLVGDPAQLAATLLSPATERAGYGQSLFERLWRGGHPTSLLRTQYRMQRDLCDLVSRRFYSGLLT-SADRVTSQSHSLPPALTALGRTHSAPLAFHDVTSGESRRPDGRSWA-----NAAEARVCARLAGDIVRT---TSLS--VGVVAPYRAQLTELRNAL--RGINGD-VEVSTVDAFQGREKDVVIVSCVRAPSHGRDVES--------IGFLADRHRLNVLLSRARLACWVVGHASTLRRNDDWRALVEAAERAGAL 684
BLAST of mRNA_C-linearis_contig104.880.1 vs. uniprot
Match: UPI000D1C26AE (probable helicase DDB_G0274399 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C26AE) HSP 1 Score: 275 bits (702), Expect = 1.320e-75 Identity = 209/616 (33.93%), Postives = 311/616 (50.49%), Query Frame = 3 Query: 2253 NVPAELWGSLLQVFNRSQVQAIRKVVEGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGHSREGLGASRGPGAKVTVGSSVSTKAEKNRAAEGGGEKKGERIVSPLENASTRVLIVAPSNAAVDELVLRLCQDGVLGKDGRVRFPKVVRVGGGR----------VDR-------------------GLDGEAGGXXXXXXXXXXXXXXRGKDGLRS-------KVVERVSLERL--VDDRIKSF--GGNVQKN---RLDLLLQAEVVCATLSGSGSQ---TLVEAVMLSAQGRAKASGKAKPRGRKWEGSRLVGGXXXXXAVLGFDAVVMDEAAQAVEPSSVIPL---KFNPRAVVMVGDPAQLPSTIFSQEAARANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASSRFYNGLLSRSAPAVTKSSHGQGFHGAPRFAPYLFHNVSGGRLKRGGEGSTASTSLSNPVEVEYISSLLNDLVNSFPGTNFNGRVGIIAPYRGQIQALERGMWSTGLRRDGVEISTVDGFQGREKDIMIFSCVRAPEERPSGDSTARPVYGGIGFLDDWRRLNVAITRAKFAMWIVGHSGVLKQSKEWRELINDSKQRG 3953
++P +L L + +N SQ+ +I V + +L+QGPPGTGKTRTI+GIV LLA H+ E G KAE++ + +K + L+ +TR+L+ A SNAAVDELV R+ + GV DG +P +VRVG + +DR L + +DG+ + +R+ L L V++R F G N +K +L++L +A+VV TLSG G TL+E + R + + ++ FDAV++DEAAQAVEPS++IPL K +++GDP QLP+T+ S A+R + S+F+R Q+ G+P ML TQYRMHP+I SF S+ +Y G L + V + FH F PY F ++ G+ + G + SL+NP E E+I LL L +P GR+G+I PY+ Q + L+ M S G++++TVD FQGRE DI++ S VRA GDS A G+GFL D RR+NVA+TRAKF++W+VG++ L+++ +W+ L+ D ++RG
Sbjct: 52 SLPPQLRSKLRREYNESQLSSIAAVADQM---ISLIQGPPGTGKTRTILGIVSALLA--------HANEEAG-----------------KAEEHEMLDVLTDKHQTKFRDKLK--ATRILVCAQSNAAVDELVTRISKHGVYNYDGGTYWPSIVRVGDTKRVHSQAMAVHIDRLVAKRMAENAGVHNAHSPQELRSKLDEVLGNMQALAAPAEVESQDGIPKLDKLAGLQEQQRLLLSELIKVENREHGFLMGSNRKKKQAMKLEVLREADVVLTTLSGCGGHIYSTLMEFIAT----------------RDAQAAEML-----------FDAVIIDEAAQAVEPSTLIPLQLLKATRGKCILIGDPKQLPATVLSVPASRLLFDCSMFERFQKHGYPVSMLTTQYRMHPEIRSFPSTHYYGGQL-KDGSTVLHGNRSATFHRERCFEPYRFFDIRDGQERPG-----SMQSLTNPDEAEFIFQLLRVLKERYPEEVRPGRIGVITPYQEQRKVLQENMRSL---HSGIDVNTVDSFQGREADIIVLSTVRAS----FGDSQA-----GVGFLADVRRMNVALTRAKFSLWVVGNARTLERNPDWKALLQDCRRRG 592
BLAST of mRNA_C-linearis_contig104.880.1 vs. uniprot
Match: A0A482SHI2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHI2_9ARCH) HSP 1 Score: 268 bits (686), Expect = 4.230e-75 Identity = 168/389 (43.19%), Postives = 217/389 (55.78%), Query Frame = 3 Query: 2832 KVVERVSLERLVDD---RIKSFGG---NVQKNRLDLLLQAEVVCATLSGSGSQTLVEAVMLSAQGRAKASGKAKPRGRKWEGSRLVGGXXXXXAVLGFDAVVMDEAAQAVEPSSVIPLKFNPRAVVMVGDPAQLPSTIFSQEAARANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASSRFYNGLLSRSAPAVTKSSHGQGFHG--APRFAPYLFHNVSGGRLKRGGEGSTASTSLSNPVEVEYISSLLNDLVNSFPGTNFNGRVGIIAPYRGQ----IQALERGMWSTGLRRDGVEISTVDGFQGREKDIMIFSCVRAPEERPSGDSTARPVYGGIGFLDDWRRLNVAITRAKFAMWIVGHSGVLKQSKEWRELINDSKQRGAFV 3962
++VERVSL+R+V D R+ G R ++ +A++V TLSG+GSQ ++E V+ R+ G FD VV+DEAAQAVEPSS+IP K+NP+ VVMVGDP QLP+T+FS+ ANY QSLFQRLQR G P ML+TQYRMHP IA F S R+YN L + +G++ + F P +FH+V GR K G S+ N E Y+ L L+ +P N +GIIAPYR Q + L+ + EISTVDGFQGREKDI+IFSCVRAP S R GIGFL +W+RLNVAITRA+F +W+VGH L++ EW LI + + A V
Sbjct: 26 RIVERVSLDRIVQDKKQRMDKISGVPLRASDLRKQVMERADIVACTLSGAGSQPILEVVL-----------------------RISG--------FTFDCVVIDEAAQAVEPSSLIPFKYNPQLVVMVGDPCQLPATVFSRLCKEANYSQSLFQRLQRSGVPVAMLETQYRMHPAIAEFPSMRYYNNFLVTDPHVAATVPNSKGYYQDKSELFRPIVFHDVMYGREKLEG------FSMYNTAEARYVVDLFCTLIRDYPKEKTN--IGIIAPYRAQRKLITRMLKEHLGGKVYNALDTEISTVDGFQGREKDIIIFSCVRAPTGNSSKQLIDRS-GAGIGFLKEWQRLNVAITRARFGLWLVGHKATLQKDGEWDALIRFIEAKKAVV 374
BLAST of mRNA_C-linearis_contig104.880.1 vs. uniprot
Match: K3W9Z7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9Z7_GLOUD) HSP 1 Score: 280 bits (717), Expect = 1.920e-74 Identity = 202/574 (35.19%), Postives = 292/574 (50.87%), Query Frame = 3 Query: 2268 LWGSLLQVFNRSQVQAIRKVVEGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGHSREGLGASRGPGAKVTVGSSVSTKAEKNRAAEGGGEKKGERIVSPLENASTRVLIVAPSNAAVDELVLRLCQDGVL-GKDGRVRFPKVVRVGGGRVDRGLDGEAGGXXXXXXXXXXXXXXRGKDGLR--SKVVERVSLERLVDDRIKSFGGNVQKNRLDLLLQAEVVCATLSGSGSQTLVEAVMLSAQGRAKASGKAKPRGRKWEGSRLVGGXXXXXAVLGFDAVVMDEAAQAVEPSSVIPLKFNPRAVVMVGDPAQLPSTIFSQEAARANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASSRFYNGLLSRSAPAVTKSSHGQGFHGAPRFAPYLFHNVSGGRLKRGGEGSTASTSLSNPVEVEYISSLLNDLVNSFPGTNFNGRVGIIAPYRGQIQALERGMWSTGLRRD-----GVEISTVDGFQGREKDIMIFSCVRAPEERPSGDSTARPVYGGI-GFLDDWRRLNVAITRAKFAMWIVGHSGVLKQSKEWRELINDSKQRGAFV 3962
L+ L + +N SQ+ AI + ++QGPPGTGKT+TI+G++ LL G P S+E G K SSVS + S R+L+ APSNAAVDEL++RL +G+ G P++VRVG L + + K R ++ VE + LE LV K+F N + R ++ A++V TLSG+GS + + FDAVV+DEAAQAVE S++IP KF P +++VGD QLP+T+ S++ Y +SLFQRL G +LD QYRMHPDI++F S+ FY G L + A K + +H F P+LF++V G+ + + S SL N E+E+I L+ +L+ +P ++ ++GIIAPY+ QI L G + L RD +E++TVDGFQGREK+I+I+SCVR SG + R G + F D RR+NVAITRAK ++WI+G+S +L+QS+ WR LI +K ++
Sbjct: 493 LYSELERKYNSSQLDAIIGCI--GEENHVIIQGPPGTGKTKTILGVLSALLDGAAVGAPKKSKESTRIRVGASLKNDTSSSVS---------------------KSVAETSIRILVAAPSNAAVDELIVRLLNEGIYDGVKCSSYRPRIVRVGR---PESLQQQRPANERGQPDSSLTDNKKIKKKWRKYAQEVEEILLENLVTKHRKAF-PNTKMARQGIVKNAQIVFCTLSGAGSVAMCDFAQE------------------------------------FDAVVIDEAAQAVEASALIPFKFRPNRIILVGDHRQLPATVISKKLIDIGYDRSLFQRLIENGSQVFLLDKQYRMHPDISNFPSTYFYRGKLIQDAKL--KDWTARKYHAHRLFQPFLFYDVLSGQQSQ----VSGSKSLRNLNEIEFILLLVRELLRKYPEMDWRKKIGIIAPYKQQIYEL--GSHLSRLERDLDQCLEIEVNTVDGFQGREKEIIIYSCVRTS----SGGNRNR--NGKLDAFWADERRMNVAITRAKSSLWIIGNSNLLEQSRAWRALIRMAKDHKKYI 989
BLAST of mRNA_C-linearis_contig104.880.1 vs. uniprot
Match: A0A7S1YS34_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YS34_9STRA) HSP 1 Score: 282 bits (722), Expect = 5.880e-74 Identity = 215/608 (35.36%), Postives = 299/608 (49.18%), Query Frame = 3 Query: 2247 PSNVPAELWGSLLQVFNRSQVQAIRKVVEGSPSG-FTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGHSREGLGASRGPGAKVTVGSSVSTKAEKNRAAEGGGEKKGERIVSPLENASTRVLIVAPSNAAVDELVLRLCQ-----DGVLGKDGRVRFPKVV------RVGGGRVDRGLDGEAGGXXXXXXXXXXXXXXRGKDGLRSKVVERVSLERLVDD--RIKSFGG--------------NVQKNRLDLLLQAEVVCATLSGSGSQTLVEAVMLSAQGRAKASGKAKPRGRKWEGSRLVGGXXXXXAVLGFDAVVMDEAAQAVEPSSVIPLKFNPRAVVMVGDPAQLPSTIFSQEAARANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASSRFYNGLLSRSAPA-----VTKSSHGQGFHGAPRFAPYLFHNVSGGRLKRGGEGSTASTSLSNPVEVEYISSLLNDLVNSFPGTNFNG----RVGIIAPYRGQIQALERGMWSTGLRRDG---VEISTVDGFQGREKDIMIFSCVRAPEERPSGDSTARPVYGGIGFLDDWRRLNVAITRAKFAMWIVGHSGVLKQSKEWRELINDSKQR 3950
P++VP +W L N Q+ AI ++ G G F LLQGPPGTGKT TI+G+V LL G P G G +V +G+++S +++ G + P+ + R+L+ APSN AVD+L RL + +G LG VRF + R G GR R G R + + ++L+ +V+ R++ G N + R +L + VVC TLSG+GS+ E+V ++ S FDAV++DEA QA EPSS+IPLK+NP VVMVGDP QLP +FSQ + RA++G+SLF+RLQ G P +L QYRMH +I F S FY+G L S+ T SSH P F PY F N++ G +KR EG +SN E +I LLN+ G FN +GII+ Y Q++ L+R + S + G ++ISTVDGFQG EKDI+I SCVR+ + IGFL D R+NVA+TRA+ ++WIVG+ VL + W E+IND+ +R
Sbjct: 631 PASVPRGIWDKLSLTLNPFQLLAIGNIISGRSKGNFVLLQGPPGTGKTTTIIGLVTALLNGSSTLPGGKVS---------GTRVQIGNTLSRQSDD-------GNNNTATLNVPV---ARRILVCAPSNTAVDDLAWRLHKLAVGPNGALGGFNIVRFGQAPGEERHDRRGKGRKQRTTQSSVEG--------------------RDEYLREINLDLIVESIARVRGTGDFADHDGNKRLSKNINYGQERRQILTKCHVVCTTLSGAGSKAFAESVSRD----------------EFHNSE-------------FDAVIIDEACQASEPSSLIPLKYNPNIVVMVGDPQQLPVLLFSQSSKRAHFGRSLFERLQLNGWPVNVLRMQYRMHDEIVRFPSMHFYSGQLITSSNVRGRGLATWSSH-------PCFPPYRFWNLNKGIMKRSAEGG-----VSNQDEYMFIRRLLNEF-----GILFNRVRPISIGIISFYNDQVELLKRSINSLPWIKSGKISLQISTVDGFQGSEKDIIILSCVRSSSSNKPFNRDRASSNNFIGFLQDRCRVNVALTRARESLWIVGNCDVLYTNVLWAEIINDADRR 1153
BLAST of mRNA_C-linearis_contig104.880.1 vs. uniprot
Match: H3GXS9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXS9_PHYRM) HSP 1 Score: 281 bits (718), Expect = 6.850e-73 Identity = 207/567 (36.51%), Postives = 290/567 (51.15%), Query Frame = 3 Query: 2292 FNRSQVQAIRKVVEGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPPGHSREGLGASRGPGAKVTVGSSVSTKAEKNRAAEGGGEKKGERIVSPLENASTRVLIVAPSNAAVDELVLRLCQDGVL-GKDGRVRFPKVVRVGGGRVDRGLDGEAGGXXXXXXXXXXXXXXRGKDGLRSKVVERVSLERLVDDRIKSFGGNVQKNRLDLLLQAEVVCATLSGSGSQTLVEAVMLSAQGRAKASGKAKPRGRKWEGSRLVGGXXXXXAVLGFDAVVMDEAAQAVEPSSVIPLKFNPRAVVMVGDPAQLPSTIFSQEAARANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASSRFYNGLLSRSAPAVTKSSHGQGFHGAPRFAPYLFHNVSGGRLKRGGEGSTASTSLSNPVEVEYISSLLNDLVNSFPGTNFNGRVGIIAPYRGQIQALERGMWSTGLRRD---GVEISTVDGFQGREKDIMIFSCVRAP------EERPSGDSTARPVYGGIGFLDDWRRLNVAITRAKFAMWIVGHSGVLKQSKEWRELINDSKQRGAFV 3962
+N SQ+QAI + S ++QGPPGTGKT+TI+GI+ LL G L ++G A++ VG+S+ + + + + S RVL+ APSNAAVDELV+R+ +G+ G G P++VRVG + G A R K ++ VE V LE LV +F V++ R ++ A++V TLSG+GS + E FDA+++DEAAQAVE S++IP KF P VV+VGD QLP+T+ S++ Y +SL QRL G P ++L QYRMHP+IA F SS FY G L + A ++ Q +H P LF +V G + + G STSL N EVE + L+ L+N FP + R+G+IAPY+ QI + + D G+E++TVDGFQGREK+I+I+SCVR ++R S D R V F D RR+NVAITRAK ++WIVG+S +L+QS WR LI +K +V
Sbjct: 1008 YNDSQMQAILGCL--SEDSRVIIQGPPGTGKTKTILGILSALL-------DGAGLSTLQKAKGT-ARIRVGASLQSA-------------RTSAVSKTVAETSIRVLVAAPSNAAVDELVVRVLSEGLFDGGKGEPYRPRIVRVGRPETSQQQSGLAAAREASESKKN-----RKKMRKYAREVEEVLLESLVAKHRSTF-PTVKQARQAIIKNAQIVFCTLSGAGSVAMCEFAQ------------------------------------DFDALIIDEAAQAVEASTLIPFKFRPHRVVLVGDHRQLPATVISKKLVSMGYDRSLQQRLVENGSPVLLLTKQYRMHPEIAEFPSSYFYGGRLIQDANMREWTA--QDYHRDQALKPLLFLDVQGAQSQVSG-----STSLRNLSEVEVVVQLVRRLLNKFPHIEWKKRIGVIAPYKQQIYEVRGALGRLESECDRPLGIEVNTVDGFQGREKEIIIYSCVRTSHGGRRKKQRRSHDEE-RDVLDA--FWADERRMNVAITRAKSSLWIVGNSTLLQQSPAWRALIQHTKDHDRYV 1499 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.880.1 >prot_C-linearis_contig104.880.1 ID=prot_C-linearis_contig104.880.1|Name=mRNA_C-linearis_contig104.880.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1654bp MDASQPDLYSSDEDPDDSAFAKGSDSDEEENVQLLRRKRRGGKPGRAGATback to top mRNA from alignment at C-linearis_contig104:167131..184810- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.880.1 ID=mRNA_C-linearis_contig104.880.1|Name=mRNA_C-linearis_contig104.880.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=17680bp|location=Sequence derived from alignment at C-linearis_contig104:167131..184810- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:167131..184810- >mRNA_C-linearis_contig104.880.1 ID=mRNA_C-linearis_contig104.880.1|Name=mRNA_C-linearis_contig104.880.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=9924bp|location=Sequence derived from alignment at C-linearis_contig104:167131..184810- (Chordaria linearis ClinC8C monoicous)back to top |