Homology
BLAST of mRNA_C-linearis_contig104.876.1 vs. uniprot
Match: A0A6H5JH51_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH51_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 9.650e-18 Identity = 53/102 (51.96%), Postives = 62/102 (60.78%), Query Frame = 1 Query: 652 PEIVL*WGRKMRLGGNLAVCPATESVKRLVQAYLVCEVVYDD---NKRENWFKERAHLAKAEFCLGEDKAALMGVELGEATPAEQRELEKLVSDYRWVGCSV 948
PEI+L WGR MR GGNL VCP S+ RL+QAYLVCEVV D +K F+ER E K LMGVELGE + AEQ LE L+SDY + S+
Sbjct: 156 PEIILFWGRNMRRGGNLIVCPGESSMDRLIQAYLVCEVVQDSKLFDKSVTSFRERV--------TTERKGGLMGVELGETSTAEQDALENLISDYSFHDASI 249
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1108 |
| Cds size | 351 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927383.2480025-UTR-C-linearis_contig104:138294..138521 | 1622927383.2480025-UTR-C-linearis_contig104:138294..138521 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 138295..138521 + |
| 1690879667.9120274-UTR-C-linearis_contig104:138294..138521 | 1690879667.9120274-UTR-C-linearis_contig104:138294..138521 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 138295..138521 + |
| 1622927383.25965-UTR-C-linearis_contig104:140211..140424 | 1622927383.25965-UTR-C-linearis_contig104:140211..140424 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 140212..140424 + |
| 1690879667.9238837-UTR-C-linearis_contig104:140211..140424 | 1690879667.9238837-UTR-C-linearis_contig104:140211..140424 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 140212..140424 + |
| 1622927383.2686915-UTR-C-linearis_contig104:140602..140843 | 1622927383.2686915-UTR-C-linearis_contig104:140602..140843 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 140603..140843 + |
| 1690879667.932146-UTR-C-linearis_contig104:140602..140843 | 1690879667.932146-UTR-C-linearis_contig104:140602..140843 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 140603..140843 + |
| 1622927383.2941296-UTR-C-linearis_contig104:141194..141270 | 1622927383.2941296-UTR-C-linearis_contig104:141194..141270 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 141195..141270 + |
| 1690879667.951766-UTR-C-linearis_contig104:141194..141270 | 1690879667.951766-UTR-C-linearis_contig104:141194..141270 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 141195..141270 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927383.2803218-CDS-C-linearis_contig104:140843..141194 | 1622927383.2803218-CDS-C-linearis_contig104:140843..141194 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 140844..141194 + |
| 1690879667.9405143-CDS-C-linearis_contig104:140843..141194 | 1690879667.9405143-CDS-C-linearis_contig104:140843..141194 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 140844..141194 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.876.1 >prot_C-linearis_contig104.876.1 ID=prot_C-linearis_contig104.876.1|Name=mRNA_C-linearis_contig104.876.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=117bp
MRLGGNLAVCPATESVKRLVQAYLVCEVVYDDNKRENWFKERAHLAKAEF
CLGEDKAALMGVELGEATPAEQRELEKLVSDYRWVGCSVTRTCLLLSPAK
RHDVQHYRRKNCHAGW* back to topmRNA from alignment at C-linearis_contig104:138295..141270+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig104.876.1 ID=mRNA_C-linearis_contig104.876.1|Name=mRNA_C-linearis_contig104.876.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2976bp|location=Sequence derived from alignment at C-linearis_contig104:138295..141270+ (Chordaria linearis ClinC8C monoicous)
GCAGGGTTTAATCATCGCGACAGCCCGTATCATTGGCGAGGAAGTGCATA
CATTCGTTCAGAACTTGAACTTTTTCATGGTGTGCTTTACATGTACGCCA
CCGGAAGAGCGTGACCACCAGTCAGTCATTGTGACAAAAAACGCGCGGTG
CACCCGCACTGGATTTTCGTCCATGATGATGCGATTCACTGGATTGACGC
CTCCCAAGTCCGTCCCCCCTTCTACATGTGAGTGTATTGATGTTGTGACA
CTCGGCTCGCCGTAGTGGAAGGAAGCAACGCAAGAATGCGGAGAAGCTAC
TGCGGTAGATTTGTACATTACATACAGCGTGCCAAAAATAAAAATCCCTT
CCCGGCCTTTCTTCGTGCACCAAAAGAAAGAAGCAGTGCCAAGGCTTTCC
TTCGCGTCTGCCATGAAACTTCCGTTGTATCTGTCGGCATGGGTCTGGTT
CCCTGAGTTTTTAATACAGTAGGCGCCACCACTTAAGAACCTCTTGTTTT
GCCCGAGGCTCGCGGCTTATTGGCCGCCCAAACCGAGCACGTGTTCTTAT
TTGCCAAGTTCTTATTTCGGCCAGGAAATATGCTACTTACGCATGGGTTC
TTGTTCTTATTTCGACAACAAAGCGACCTACGTGGGCAGCCCTCCAGCTG
GTATTATTCCGTTCACAATACTAAGAGTAGTCATCATCACATGCCTACAT
ACATCATCAGCAGCCTCTACTCTAGGACTCTGGACGACGGCAGCACCGTG
TGGTTCAAATGCATCTGCCTCCACGGCCAGTCTCAAAACTTCACGATACT
CACACACATCGACCAACACTTGAGCAAAATAAAAGCGCACGTCACCATGG
AACAACTCTCAACCCCGTTGGTCCACAAGCGTTACGTTGGGCCTCGATAC
TCTCCCCGATCTACTCACAGCCCGGACGGAATTACCACCCACTTGCTCTG
GTGTGATCTTTTCTAGCAAAACCCACGAGCCTTTCACTGCCTCCGGGTCT
CCACTATACTTTTCGATATTATATCCTGTTGGGGGGGGGGGAGGGGGGTA
TCTTGATATTCGATCCTGCTGGGGGGGGCGTTACCTCGGCGGATCTTGGA
TCTTGGGGTTACCCACCCACCACCTGCAACCCCTATGCGATGTTCTTATC
TTCGGCCGCCATCTATTTATGTACTCCGTTCTTATTCATTGCGGCAGAGT
TACACCTCAGTTGCAGGTTCTAGTTCTTATGGCACGTCAGATTTGAGCAC
ATGTTCTTATGGTAAAGTTGTTATATTTTGGATATTTTGAGGCTGAAGTT
CTTAAGTGCTAAGTTCTTAAGTGGTGGCGCCTACTGTAGTGGACCGAGGG
TTTGCTGCGGTGTCTTGCTTCCTGCCTAGATACATAAAACCTCACAGTCA
CAAACCCCCGAGATTCCGCCGCATTTTTCGCCGCTGGGGTTGTTTTTCCG
TGCAACTCGCATTTCTGTACCATGTGCGATTACACACGAAAAGCTTTAAC
CGGTGGACACGCAGCAGTGTGCATACTTGAGCAAGGTCGGGACGACAAAT
CTCTCTCGGTCTCTCTTATTTTCTATGGAGTATATTTTTTACCGCTTGAT
GCATCTCCGGGCGTGTCCACAAAACGGGCAAGTCGATAGACTGCATGTAG
TGTAGGAGCCAACAACCGCTGCAAACGGTGAAATAACTACCCCGACATAC
GACACTGCCTGAGCACAAGCTTCTCGACAGCAGTTAGTTGCAACATTCCC
CAACACGGTCAATTTTCCCTTGTTGTTTGTTGCGCGTGTTTTACGCGATC
GTCACTCGGCGCATCTTTGTTGCTGATTTCCTTGTTTCTGCTCATCCTTG
CTCACCCCCGCGAATTATGTACGTGCGTGATGCCGATCTCCCTCCCGACC
GTTGCCTTTGATTGAAGACGGTCACCTATGGGACACACGCTCTTGGAGAT
GAGCGATCGCTTTCGGAGGAGCTGTTTGACTCTTTGGGGTTCAGACCGTG
GGAACAATTCAGTTGTTTGGACCACCTGCCTCGCCTTCGACGCCATGACC
TCTGCCTGCTTGACAAGGCCATTTCCCAGCTTAGGCCGCAGCATGTCCGA
GTATGCGTTGTCGAAGTAGACACGTTCACGGTGAGAGGAAAGGGGGGGAG
GGCCGCCAAATGAGCTATGACCCCCCGCAAGGTTGTGAGTTGATTGATCC
TCAAGCCGCTGCCGTCACGGAAACTATAGGCACAGGTGCGTGGATCGTTT
GCTCCTTCACTACTGTCACAACGCAATGCTCTCTTTCCCCCGTGCGCTTG
TGACGTAGGAGAGCGAGTGCACAATCGCGAAGGGTGGCGTTCCCCTTCAC
CTTGCACACGGTACCTACCGCTTGAAGCAGCAAGATGACCGTCACCAGAC
CCTCCCCCGAGTGATGAAACCCGTTTCAACCCACGCCCGGCCATGTCGGC
GGCAACGGGGGAGGAAGGAGGCGCACAAGAACAACCGGCAGCATCGACCC
TTCGACAGATAAGGAACCACCCGAAATCGTCCTTTAATGGGGACGTAAGA
TGCGCCTGGGGGGGAACCTCGCGGTTTGCCCTGCTACCGAGTCTGTGAAG
CGGCTCGTCCAGGCATATTTGGTGTGCGAGGTGGTCTACGACGACAACAA
GAGAGAGAATTGGTTCAAAGAACGAGCACACCTGGCCAAGGCGGAGTTTT
GCCTCGGCGAGGACAAGGCGGCATTGATGGGCGTCGAGCTGGGCGAGGCG
ACGCCTGCAGAGCAGCGTGAGCTAGAGAAGCTGGTCAGCGACTACAGGTG
GGTGGGTTGTTCGGTGACGCGGACATGCCTTCTCCTCTCACCGGCGAAAC
GGCATGATGTGCAGCACTACAGACGGAAAAATTGCCATGCTGGATGGTGA
GATCCATCATAGATTCAGGTTTTAGTCGCAGCCAAAAATCATCGGCTGTG
TCTCTCTCATCTTCCCTGCGATCTTC back to topCoding sequence (CDS) from alignment at C-linearis_contig104:138295..141270+ >mRNA_C-linearis_contig104.876.1 ID=mRNA_C-linearis_contig104.876.1|Name=mRNA_C-linearis_contig104.876.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at C-linearis_contig104:138295..141270+ (Chordaria linearis ClinC8C monoicous)
ATGCGCCTGGGGGGGAACCTCGCGGTTTGCCCTGCTACCGAGTCTGTGAA
GCGGCTCGTCCAGGCATATTTGGTGTGCGAGGTGGTCTACGACGACAACA
AGAGAGAGAATTGGTTCAAAGAACGAGCACACCTGGCCAAGGCGGAGTTT
TGCCTCGGCGAGGACAAGGCGGCATTGATGGGCGTCGAGCTGGGCGAGGC
GACGCCTGCAGAGCAGCGTGAGCTAGAGAAGCTGGTCAGCGACTACAGGT
GGGTGGGTTGTTCGGTGACGCGGACATGCCTTCTCCTCTCACCGGCGAAA
CGGCATGATGTGCAGCACTACAGACGGAAAAATTGCCATGCTGGATGGTG
AATGCGCCTGGGGGGGAACCTCGCGGTTTGCCCTGCTACCGAGTCTGTGA
AGCGGCTCGTCCAGGCATATTTGGTGTGCGAGGTGGTCTACGACGACAAC
AAGAGAGAGAATTGGTTCAAAGAACGAGCACACCTGGCCAAGGCGGAGTT
TTGCCTCGGCGAGGACAAGGCGGCATTGATGGGCGTCGAGCTGGGCGAGG
CGACGCCTGCAGAGCAGCGTGAGCTAGAGAAGCTGGTCAGCGACTACAGG
TGGGTGGGTTGTTCGGTGACGCGGACATGCCTTCTCCTCTCACCGGCGAA
ACGGCATGATGTGCAGCACTACAGACGGAAAAATTGCCATGCTGGATGGT
GA back to top
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