mRNA_C-linearis_contig104.869.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.869.1 vs. uniprot
Match: D7FIQ7_ECTSI (GRAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIQ7_ECTSI) HSP 1 Score: 963 bits (2489), Expect = 0.000e+0 Identity = 648/991 (65.39%), Postives = 716/991 (72.25%), Query Frame = 1 Query: 1 MSSAGSFVHGSSAGGEDDRKKSKEEQDIANFLSSIDDMTSSSLGEVNLHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGMHGDVSELSAIADAFPADWLQGMEGLGM-VGDQSDSSAPPQAEQTQQLPXXXXXXXXXXXXXXXXXXXPRPVAKEHS--NNREPEILGEEPEILDDVEGGYDSGR-----LMSAGGRVASWATRTPASLVGAATAAFRGDARHTAGSPSATTAADAAATATTAGADEPPLDWPGTLDMLGMTQAEAEYGGNPTAAAAAAPASELPSMPPPAAREETFPDFVEIRDPRNVSQFPKPDNALVAKVAAGGRNGGDGQAGEXXXXXXXXXXXXXXXXXXXXQRQVLPAPLRTVEVYLRPDVTWESVADVYMAVMLSRGLVVRQQTEKTVTAEKSADAPGDWSTVKLTVGVTRDKLRTLVIQFYADSR--APMLSFAGTMARFSGRAGDELYTALRDALVERRMPLSFLATDAEGVSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEERSARLAATLLPQYQANGLEPPRPMRSKPLSAYPLTTRRPPVSSCGVEEAREVMERAREHAYVAGTAGTAGSTLQKRTDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGSGSMVVAEGIRSLIRSTWEDVKDWCDEEAEARVRRKDAQVRDRLLAVERHREALVAVLRDGAGGPGASGTPVGRDFAARFRLMAKEAVLCYCKAVHAKRVGQLYLTCNHLCFHSSVLGFTSQRVLPLLTVASVSHAPSVLGMDLVTLVDRGREEHSFGIPAVEAGFPQRFRDLLNQCLVLCKADASRRAAEREGAAATDKKPDEEQILARVQRLAKAKQLREARGAXXXXXXXXXXXXXXXXPPVQPVLSPAAGVSVEKEGAVGPDQM------CGVSGGGEGIVEVGGGGAMGMGGEAAGRRNEGGRVGPXXXXXXXXXXXXA--NPGSMMAMGIQAFLEESQKR 2919
M+SAGSFVHG+ A E+ ++SKEEQDIA+F+SSIDD S ++ + + D AIADAFPADWL EG+G+ V ++DSSA Q + XXXXXXXXXXXXX ++ + NN E+LGEEP+ILD+V+ GY SG LMSAGGR+ SWA TPASLV AAT AFRGDA H + + +A A + ADE PLDW GTLDM+GM +AE + G T+A A AP SELPS+PPPAARE FPDFVEIRDPRNVSQFPKPDNALVAK AAGG GGDGQAG+ X QR VLPAPLRTVEVYLRPDVTWESV+DVYM VMLSRGLVVR QTEK VTAEKSADAPGDW+TVKLTVGVTRDKLRTLVIQFYAD+R AP+LS AGT+ARFSGR GD+LYTA+R+ LVER+MPLSFLATDAE VSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEER ARL ATLLPQY+A GL PPRP RSKPLSAYPLTTRRPPVS+CGVEEAREVMERAREH V G G + + XXXXXXXXXX GSGS VAEGIRSLIR+TWEDVK+WCDEEAEARVRRKDAQVRDRLLAVE HREAL+A LRDGAGG AS TP GR+FAARFR MAKEAVLC CKAVHAKRVGQLYLTCNH+CFHSSVLGFTSQRVLPLLTVA++SHA SVLGMDL+TLVDRG +EHSFGI AVEAGFP+RF DLL QCLVLCKADASRRAA+REGAAA++++PDEEQILARVQRLAKAKQLR XXXXXXXXXXXXXXXX ++P A + G P++ G S GG G+VE G GGAM XXXXXXXXXXXX GSMMAMGIQAFLEESQKR
Sbjct: 1 MASAGSFVHGTGAS-EERVRQSKEEQDIADFMSSIDDTASGGSTTTSVLRGGRSSVGKGGDIFLGSLSPPALQQVTGTSAAGELLADDGK---AIADAFPADWLNDFEGIGLGVQGKTDSSAASATATAQPIHSSPQGQXXXXXXXXXXXXXXXXQHRDATIQNNETGEVLGEEPQILDNVDEGYGSGAAAAGMLMSAGGRMVSWAANTPASLVDAATGAFRGDAHHAVSRNAGGDLGNGSAAAASTDADELPLDWQGTLDMVGMAEAETDTKG--TSALAVAPVSELPSLPPPAAREGGFPDFVEIRDPRNVSQFPKPDNALVAKAAAGG--GGDGQAGQGAXESGEHAAAAGQERG---QRHVLPAPLRTVEVYLRPDVTWESVSDVYMGVMLSRGLVVRHQTEKMVTAEKSADAPGDWATVKLTVGVTRDKLRTLVIQFYADTRKQAPILSLAGTIARFSGRTGDDLYTAIRNVLVERQMPLSFLATDAEEVSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEERLARLEATLLPQYRACGLAPPRPTRSKPLSAYPLTTRRPPVSACGVEEAREVMERAREH--VRG----GGDSFPPQKGVDVDDENVFASGGXXXXXXXXXXDEGRGAKVGSGSS---VAEGIRSLIRATWEDVKEWCDEEAEARVRRKDAQVRDRLLAVEGHREALIAALRDGAGGSAASSTPAGREFAARFRPMAKEAVLCQCKAVHAKRVGQLYLTCNHVCFHSSVLGFTSQRVLPLLTVATISHASSVLGMDLLTLVDRGGQEHSFGITAVEAGFPERFHDLLKQCLVLCKADASRRAAQREGAAASEREPDEEQILARVQRLAKAKQLRXXXXXXXXXXXXXXXXXXXXXXXXD--MAPPAASPHSRPGYPRPEESEFAERDTGASVGG-GVVEGGAGGAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSGSMMAMGIQAFLEESQKR 968
BLAST of mRNA_C-linearis_contig104.869.1 vs. uniprot
Match: A0A7S2F8A2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8A2_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 6.390e-5 Identity = 44/131 (33.59%), Postives = 67/131 (51.15%), Query Frame = 1 Query: 1942 LIRSTWEDVKDWCDEEAEARVRRKDAQVRDRLLAVERHREALVAVLRDGAGGPGASGTPVGRDFAARFRLMAKEAVLCYCKAVHAK-----RVGQLYLTCNHLCFHS--SVLGFTSQRVLPLLTVASVSHA 2313
++R+ W + C+EEA AR+ RK V RL A+E +R A+V+ L + + V R F RFR+ A EA+L C AV + R G++Y+T HL F +L +Q +P T+ + A
Sbjct: 69 VVRALWRLLGSKCEEEARARMARKQKVVTQRLQAIEGYRSAVVSKLANRSQQNRTELIGVERAFRGRFRV-ADEALLVDCAAVVTEADGKQRKGRVYVTMGHLWFDDPGGLLTSPTQTPIPFYTIHEIGKA 198 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.869.1 >prot_C-linearis_contig104.869.1 ID=prot_C-linearis_contig104.869.1|Name=mRNA_C-linearis_contig104.869.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=974bp MSSAGSFVHGSSAGGEDDRKKSKEEQDIANFLSSIDDMTSSSLGEVNLHGback to top mRNA from alignment at C-linearis_contig104:79265..84496- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.869.1 ID=mRNA_C-linearis_contig104.869.1|Name=mRNA_C-linearis_contig104.869.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5232bp|location=Sequence derived from alignment at C-linearis_contig104:79265..84496- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:79265..84496- >mRNA_C-linearis_contig104.869.1 ID=mRNA_C-linearis_contig104.869.1|Name=mRNA_C-linearis_contig104.869.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5844bp|location=Sequence derived from alignment at C-linearis_contig104:79265..84496- (Chordaria linearis ClinC8C monoicous)back to top |