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Homology
BLAST of mRNA_C-linearis_contig104.865.1 vs. uniprot
Match: D7FIQ5_ECTSI (POT1 protection of telomeres 1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ5_ECTSI) HSP 1 Score: 282 bits (721), Expect = 2.920e-87 Identity = 146/207 (70.53%), Postives = 166/207 (80.19%), Query Frame = 3 Query: 273 ASPRIASSIAQVSMESMRVENLRGSVQTVFPIHACMPPTANNSETQDYGTVGSDGPIEGA---------------AKVFQVILRDLSVPGSTSTSNTLHHRINAYFYDKWADKHHAGIGPGDEIEVSGPAARLVHPDPSAADNGDHPFCLVFHTANDDALLALGAVAANHPSGGAQG-GVRAEE--DTVSCRVVRKAEQPGP--RGG 833
++P +A SIA+V+ ES+RVE LRG VQTVFPIHACM PTANNSETQDYGTVGSDGPIEGA AKVFQV LRDLS+PG++ + LHHRI+AYFYDKWAD HH+GIGPGD+IEVSGPAARLVHPDPSA+DNGDHPFCLVFHT DD+LLALGAVAA+H +G A G G R++E D VSC+VVRKA QPG RGG
Sbjct: 4 STPTVARSIAEVTRESIRVEKLRGRVQTVFPIHACMTPTANNSETQDYGTVGSDGPIEGATKRSASILARDSVASAKVFQVTLRDLSLPGNSGANGNLHHRIDAYFYDKWADDHHSGIGPGDDIEVSGPAARLVHPDPSASDNGDHPFCLVFHTGRDDSLLALGAVAADHLAGVAGGSGGRSDEADDVVSCKVVRKAAQPGAGSRGG 210
BLAST of mRNA_C-linearis_contig104.865.1 vs. uniprot
Match: A0A6H5JCK4_9PHAE (Telo_bind domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK4_9PHAE) HSP 1 Score: 285 bits (730), Expect = 4.620e-86 Identity = 140/188 (74.47%), Postives = 163/188 (86.70%), Query Frame = 3 Query: 273 ASPRIASSIAQVSMESMRVENLRGSVQTVFPIHACMPPTANNSETQDYGTVGSDGPIEGAAKVFQVILRDLSVPGSTSTSNTLHHRINAYFYDKWADKHHAGIGPGDEIEVSGPAARLVHPDPSAADNGDHPFCLVFHTANDDALLALGAVAANHPSGGAQGGV-RAEE--DTVSCRVVRKAEQPGPR 827
++P +A SIA+V+ E++RVE LRG VQTVFPIHACM PTA+NSETQDYGTVGSDGPIEGA KVFQV LRDLS+PG++ + LHHRI+AYFYDKWAD HH+GIGPGD+IEVSGPAARLVHPDPSA+DNGDHPFCLVFHT +DD+LLALGA+AA+H +G A GG R +E D VSC+VVRKA QPG R
Sbjct: 4 SAPTVARSIAEVTREAIRVEKLRGRVQTVFPIHACMTPTASNSETQDYGTVGSDGPIEGATKVFQVTLRDLSLPGNSGANGNLHHRIDAYFYDKWADDHHSGIGPGDDIEVSGPAARLVHPDPSASDNGDHPFCLVFHTGSDDSLLALGAMAADHLAGVAGGGGGRNDEADDVVSCKVVRKAVQPGAR 191
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.865.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
| Match Name | E-value | Identity | Description | |
|---|
| D7FIQ5_ECTSI | 2.920e-87 | 70.53 | POT1 protection of telomeres 1 homolog n=1 Tax=Ect... | [more] |
| A0A6H5JCK4_9PHAE | 4.620e-86 | 74.47 | Telo_bind domain-containing protein n=1 Tax=Ectoca... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 283.1 |
| Seed ortholog evalue | 9.4e-74 |
| Seed eggNOG ortholog | 2880.D7FIQ5 |
| Preferred name | POT1 |
| KEGG ko | ko:K10406,ko:K11109,ko:K22128 |
| KEGG TC | 1.A.75.1 |
| KEGG Module | M00424 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000217,GO:0000228,GO:0000723,GO:0000781,GO:0000782,GO:0000783,GO:0000784,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003723,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005724,GO:0006139,GO:0006259,GO:0006278,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010521,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010638,GO:0010639,GO:0010833,GO:0016043,GO:0016233,GO:0017151,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0022607,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031933,GO:0031974,GO:0031981,GO:0032200,GO:0032202,GO:0032204,GO:0032205,GO:0032206,GO:0032210,GO:0032211,GO:0032212,GO:0032356,GO:0032357,GO:0032392,GO:0032508,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0042162,GO:0042592,GO:0043047,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045184,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051054,GO:0051095,GO:0051096,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051276,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051348,GO:0051641,GO:0051972,GO:0051973,GO:0051974,GO:0060249,GO:0060255,GO:0060382,GO:0060383,GO:0061820,GO:0061821,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070187,GO:0070198,GO:0070199,GO:0070200,GO:0070727,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0072594,GO:0080090,GO:0090304,GO:0090657,GO:0097159,GO:0098505,GO:0098687,GO:0098772,GO:0098847,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1904356,GO:1904357,GO:1904358,GO:1905462,GO:1905464,GO:1905773,GO:1905774,GO:1905776,GO:1990955,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2000573,GO:2001251,GO:2001252 |
| EggNOG free text desc. | positive regulation of DNA strand elongation |
| EggNOG OGs | KOG4757@1,KOG4757@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00002,ko02000,ko03032,ko04131,ko04812 |
| Exons | 3 |
| Model size | 833 |
| Cds size | 564 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927382.1733212-CDS-C-linearis_contig104:61502..61733 | 1622927382.1733212-CDS-C-linearis_contig104:61502..61733 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 61503..61733 - |
| 1690879667.1289155-CDS-C-linearis_contig104:61502..61733 | 1690879667.1289155-CDS-C-linearis_contig104:61502..61733 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 61503..61733 - |
| 1622927382.1895583-CDS-C-linearis_contig104:62141..62285 | 1622927382.1895583-CDS-C-linearis_contig104:62141..62285 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 62142..62285 - |
| 1690879667.1409936-CDS-C-linearis_contig104:62141..62285 | 1690879667.1409936-CDS-C-linearis_contig104:62141..62285 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 62142..62285 - |
| 1622927382.202319-CDS-C-linearis_contig104:63053..63242 | 1622927382.202319-CDS-C-linearis_contig104:63053..63242 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 63054..63242 - |
| 1690879667.14946-CDS-C-linearis_contig104:63053..63242 | 1690879667.14946-CDS-C-linearis_contig104:63053..63242 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 63054..63242 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927382.2161233-UTR-C-linearis_contig104:63242..63511 | 1622927382.2161233-UTR-C-linearis_contig104:63242..63511 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 63243..63511 - |
| 1690879667.158339-UTR-C-linearis_contig104:63242..63511 | 1690879667.158339-UTR-C-linearis_contig104:63242..63511 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 63243..63511 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.865.1 >prot_C-linearis_contig104.865.1 ID=prot_C-linearis_contig104.865.1|Name=mRNA_C-linearis_contig104.865.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=188bp
MASPRIASSIAQVSMESMRVENLRGSVQTVFPIHACMPPTANNSETQDYG
TVGSDGPIEGAAKVFQVILRDLSVPGSTSTSNTLHHRINAYFYDKWADKH
HAGIGPGDEIEVSGPAARLVHPDPSAADNGDHPFCLVFHTANDDALLALG
AVAANHPSGGAQGGVRAEEDTVSCRVVRKAEQPGPRGG back to topmRNA from alignment at C-linearis_contig104:61503..63511- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig104.865.1 ID=mRNA_C-linearis_contig104.865.1|Name=mRNA_C-linearis_contig104.865.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2009bp|location=Sequence derived from alignment at C-linearis_contig104:61503..63511- (Chordaria linearis ClinC8C monoicous)
GGTTGAATAATGAGGCATCATTTGATATTTGCTATTTGCCGTTTGTTTTG
ACTCGGGTCGCAGAGAGCAGACTGACGGCTTCTACGCGACAAATGCATAC
CGTGGCATAGTCCCTGTTCACTGCTGTGTATCACGGATCAAGGAGAGGCA
TAAAGAGAGGGAATACTTGATATACGAACGGAAAAAAGAGAGCGAGCGAG
CGCTGTCTCTCTACAACGCGCTGCGCGAACCGCCAAACCACTACTCTGTA
ACAGGTCGCTCATAGGACCATGGCGTCTCCCAGGATAGCCAGCTCTATAG
CGCAGGTGTCCATGGAGTCGATGCGCGTGGAGAACCTACGAGGAAGCGTG
CAGACGGTGTTTCCGATCCACGCGTGCATGCCGCCAACGGCCAACAACAG
CGAGACGCAAGACTACGGGACGGTGGGCAGCGACGGTCCGATCGAGGGAG
CAGCCAAGGTGATGGTGCGATGATAGTTTGGAAAAACCTGGGTTAGTTCC
GGTCACAGGTTTTGTTAAGCTAAACGGAAGACTGAGTTTGGTGTTTTTGG
CTGTTCGGGAGTTCTTGGGAACATGTTGTTTCGTCTCACGGCTTATGTAT
AAAAATTGCAAAATTGCACAGGTTCCGCCGCGTGTGGTCTCCTACTGTAT
CCTGTTCATAGCAAGACGTAGCCGTGCTGCCGTGTTATTCGCTCATTCCC
GACTATTCCACAGGATTTACCAGGGCACTGAGATGCATGCTCTTCGGCTG
TCGGTTGGGCGTGGTAGAATCAGCACAGGGCATAGAGGTGTAGAGAAAAC
CAGCACCCCGACAAAGCTGTCGGTTTTAAACACGCATGTCGCATCTCAGC
AAGCAGCTTTGCGTTTGGTTATGGGCGCTGGGTAACCAACCATTACAGAT
ACTTTCTCGCCGGTGGTAGTTGAACAACGCCGACCGGTTGTGAATCTATT
GCTGCGGCACCGTTCAGGGACTGGTTCACCGTGAAGAGAGAGTAGAGCAC
GGAAAGTGTGGTGGCAACTCCAGGAGGAAGAACCCCGAAAAATACTGCAA
CCTGCAACGGCAAGGTGGTTCATGAGCTTCTCTGCGCCCGTCCTTGCACA
CTCTGTTCTTTTCCGAGTGTAGGCGTCTACCTCGCCTCACTCTCCTCTTT
TCTCACCTGTGTACAGCAAAACCAACACCGCAAGGCTTTCGCCTTGTTTT
CTCGCCCCGGAACCTACCCCCCCCAGGTGTTCCAAGTTATCTTACGGGAC
CTAAGCGTGCCAGGTAGCACCAGCACCAGCAACACCCTTCACCACCGCAT
CAACGCCTACTTCTATGACAAGTGGGCGGACAAGCACCACGCCGGCATCG
GCCCCGGTGACGAGATAGAGGTGAGCGAAACCGCCGCGGTACAAAGGCGA
GGGGGCGCGCCAGCGCGGCAGTAATTTGTCGTGCTATTTAGCCGCAGGCG
AGCGTACCCATCTAGCCCTTGACTTGGCAACGCCGCCCCCTCCCCCTCCT
GTGGGCTTGCCAGCTGTCAAAGCATCCAACCGCTACAACACCAGTTCAGT
TCTGAAAGAACTTTGCCATAAACGTTGAACACCTGCCATCGTTGTCGACG
TAGCCTCCTCCGCGGAAGCGGGACCCCTGATTACTATTTAGTGTGGCTCT
GCCAAACCCGCGTCCGCTGCAGAGCTTCCCTGGCCCAGATCTCTCGATCG
AATGCGCATGAATGCTGCCCCCTCCCGACCATGTCACCCACCCACACACA
CTCCCGCACGCATTTGACTTTCCTCAAGGTCTCTGGGCCGGCCGCCCGGC
TCGTCCACCCGGACCCTTCCGCGGCCGACAACGGCGACCACCCCTTCTGC
CTGGTCTTCCACACCGCCAACGACGACGCCCTGCTGGCCCTGGGCGCCGT
CGCGGCGAACCACCCCAGCGGCGGCGCACAAGGGGGGGTGCGGGCGGAGG
AAGACACCGTTTCGTGCAGGGTTGTCCGGAAGGCCGAGCAGCCGGGGCCT
AGAGGCGGG back to topCoding sequence (CDS) from alignment at C-linearis_contig104:61503..63511- >mRNA_C-linearis_contig104.865.1 ID=mRNA_C-linearis_contig104.865.1|Name=mRNA_C-linearis_contig104.865.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at C-linearis_contig104:61503..63511- (Chordaria linearis ClinC8C monoicous)
ATGGCGTCTCCCAGGATAGCCAGCTCTATAGCGCAGGTGTCCATGGAGTC
GATGCGCGTGGAGAACCTACGAGGAAGCGTGCAGACGGTGTTTCCGATCC
ACGCGTGCATGCCGCCAACGGCCAACAACAGCGAGACGCAAGACTACGGG
ACGGTGGGCAGCGACGGTCCGATCGAGGGAGCAGCCAAGATGGCGTCTCC
CAGGATAGCCAGCTCTATAGCGCAGGTGTCCATGGAGTCGATGCGCGTGG
AGAACCTACGAGGAAGCGTGCAGACGGTGTTTCCGATCCACGCGTGCATG
CCGCCAACGGCCAACAACAGCGAGACGCAAGACTACGGGACGGTGGGCAG
CGACGGTCCGATCGAGGGAGCAGCCAAGGTGTTCCAAGTTATCTTACGGG
ACCTAAGCGTGCCAGGTAGCACCAGCACCAGCAACACCCTTCACCACCGC
ATCAACGCCTACTTCTATGACAAGTGGGCGGACAAGCACCACGCCGGCAT
CGGCCCCGGTGACGAGATAGAGGTGTTCCAAGTTATCTTACGGGACCTAA
GCGTGCCAGGTAGCACCAGCACCAGCAACACCCTTCACCACCGCATCAAC
GCCTACTTCTATGACAAGTGGGCGGACAAGCACCACGCCGGCATCGGCCC
CGGTGACGAGATAGAGGTCTCTGGGCCGGCCGCCCGGCTCGTCCACCCGG
ACCCTTCCGCGGCCGACAACGGCGACCACCCCTTCTGCCTGGTCTTCCAC
ACCGCCAACGACGACGCCCTGCTGGCCCTGGGCGCCGTCGCGGCGAACCA
CCCCAGCGGCGGCGCACAAGGGGGGGTGCGGGCGGAGGAAGACACCGTTT
CGTGCAGGGTTGTCCGGAAGGCCGAGCAGCCGGGGCCTAGAGGCGGGGTC
TCTGGGCCGGCCGCCCGGCTCGTCCACCCGGACCCTTCCGCGGCCGACAA
CGGCGACCACCCCTTCTGCCTGGTCTTCCACACCGCCAACGACGACGCCC
TGCTGGCCCTGGGCGCCGTCGCGGCGAACCACCCCAGCGGCGGCGCACAA
GGGGGGGTGCGGGCGGAGGAAGACACCGTTTCGTGCAGGGTTGTCCGGAA
GGCCGAGCAGCCGGGGCCTAGAGGCGGG back to top
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