mRNA_C-linearis_contig104.865.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig104.865.1
Unique Name	mRNA_C-linearis_contig104.865.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig104.865.1 vs. uniprot
Match: D7FIQ5_ECTSI (POT1 protection of telomeres 1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ5_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 2.920e-87
Identity = 146/207 (70.53%), Postives = 166/207 (80.19%), Query Frame = 3

Query:  273 ASPRIASSIAQVSMESMRVENLRGSVQTVFPIHACMPPTANNSETQDYGTVGSDGPIEGA---------------AKVFQVILRDLSVPGSTSTSNTLHHRINAYFYDKWADKHHAGIGPGDEIEVSGPAARLVHPDPSAADNGDHPFCLVFHTANDDALLALGAVAANHPSGGAQG-GVRAEE--DTVSCRVVRKAEQPGP--RGG 833
            ++P +A SIA+V+ ES+RVE LRG VQTVFPIHACM PTANNSETQDYGTVGSDGPIEGA               AKVFQV LRDLS+PG++  +  LHHRI+AYFYDKWAD HH+GIGPGD+IEVSGPAARLVHPDPSA+DNGDHPFCLVFHT  DD+LLALGAVAA+H +G A G G R++E  D VSC+VVRKA QPG   RGG
Sbjct:    4 STPTVARSIAEVTRESIRVEKLRGRVQTVFPIHACMTPTANNSETQDYGTVGSDGPIEGATKRSASILARDSVASAKVFQVTLRDLSLPGNSGANGNLHHRIDAYFYDKWADDHHSGIGPGDDIEVSGPAARLVHPDPSASDNGDHPFCLVFHTGRDDSLLALGAVAADHLAGVAGGSGGRSDEADDVVSCKVVRKAAQPGAGSRGG 210

[Close]

BLAST of mRNA_C-linearis_contig104.865.1 vs. uniprot
Match: A0A6H5JCK4_9PHAE (Telo_bind domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK4_9PHAE)

HSP 1 Score: 285 bits (730), Expect = 4.620e-86
Identity = 140/188 (74.47%), Postives = 163/188 (86.70%), Query Frame = 3

Query:  273 ASPRIASSIAQVSMESMRVENLRGSVQTVFPIHACMPPTANNSETQDYGTVGSDGPIEGAAKVFQVILRDLSVPGSTSTSNTLHHRINAYFYDKWADKHHAGIGPGDEIEVSGPAARLVHPDPSAADNGDHPFCLVFHTANDDALLALGAVAANHPSGGAQGGV-RAEE--DTVSCRVVRKAEQPGPR 827
            ++P +A SIA+V+ E++RVE LRG VQTVFPIHACM PTA+NSETQDYGTVGSDGPIEGA KVFQV LRDLS+PG++  +  LHHRI+AYFYDKWAD HH+GIGPGD+IEVSGPAARLVHPDPSA+DNGDHPFCLVFHT +DD+LLALGA+AA+H +G A GG  R +E  D VSC+VVRKA QPG R
Sbjct:    4 SAPTVARSIAEVTREAIRVEKLRGRVQTVFPIHACMTPTASNSETQDYGTVGSDGPIEGATKVFQVTLRDLSLPGNSGANGNLHHRIDAYFYDKWADDHHSGIGPGDDIEVSGPAARLVHPDPSASDNGDHPFCLVFHTGSDDSLLALGAMAADHLAGVAGGGGGRNDEADDVVSCKVVRKAVQPGAR 191

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig104.865.1 vs. uniprot

BLAST of mRNA_C-linearis_contig104.865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7FIQ5_ECTSI	2.920e-87	70.53	POT1 protection of telomeres 1 homolog n=1 Tax=Ect...	[more]
A0A6H5JCK4_9PHAE	4.620e-86	74.47	Telo_bind domain-containing protein n=1 Tax=Ectoca...	[more]

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	283.1
Seed ortholog evalue	9.4e-74
Seed eggNOG ortholog	2880.D7FIQ5
Preferred name	POT1
KEGG ko	ko:K10406,ko:K11109,ko:K22128
KEGG TC	1.A.75.1
KEGG Module	M00424
Hectar predicted targeting category	other localisation
GOs	GO:0000217,GO:0000228,GO:0000723,GO:0000781,GO:0000782,GO:0000783,GO:0000784,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003723,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005724,GO:0006139,GO:0006259,GO:0006278,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010521,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010638,GO:0010639,GO:0010833,GO:0016043,GO:0016233,GO:0017151,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0022607,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031933,GO:0031974,GO:0031981,GO:0032200,GO:0032202,GO:0032204,GO:0032205,GO:0032206,GO:0032210,GO:0032211,GO:0032212,GO:0032356,GO:0032357,GO:0032392,GO:0032508,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0042162,GO:0042592,GO:0043047,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045184,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051054,GO:0051095,GO:0051096,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051276,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051348,GO:0051641,GO:0051972,GO:0051973,GO:0051974,GO:0060249,GO:0060255,GO:0060382,GO:0060383,GO:0061820,GO:0061821,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070187,GO:0070198,GO:0070199,GO:0070200,GO:0070727,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0072594,GO:0080090,GO:0090304,GO:0090657,GO:0097159,GO:0098505,GO:0098687,GO:0098772,GO:0098847,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1904356,GO:1904357,GO:1904358,GO:1905462,GO:1905464,GO:1905773,GO:1905774,GO:1905776,GO:1990955,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2000573,GO:2001251,GO:2001252
EggNOG free text desc.	positive regulation of DNA strand elongation
EggNOG OGs	KOG4757@1,KOG4757@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00002,ko02000,ko03032,ko04131,ko04812
Exons	3
Model size	833
Cds size	564
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig104.865.1	prot_C-linearis_contig104.865.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig104 61503..63242 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927382.1733212-CDS-C-linearis_contig104:61502..61733	1622927382.1733212-CDS-C-linearis_contig104:61502..61733	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 61503..61733 -
1690879667.1289155-CDS-C-linearis_contig104:61502..61733	1690879667.1289155-CDS-C-linearis_contig104:61502..61733	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 61503..61733 -
1622927382.1895583-CDS-C-linearis_contig104:62141..62285	1622927382.1895583-CDS-C-linearis_contig104:62141..62285	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 62142..62285 -
1690879667.1409936-CDS-C-linearis_contig104:62141..62285	1690879667.1409936-CDS-C-linearis_contig104:62141..62285	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 62142..62285 -
1622927382.202319-CDS-C-linearis_contig104:63053..63242	1622927382.202319-CDS-C-linearis_contig104:63053..63242	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 63054..63242 -
1690879667.14946-CDS-C-linearis_contig104:63053..63242	1690879667.14946-CDS-C-linearis_contig104:63053..63242	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig104 63054..63242 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927382.2161233-UTR-C-linearis_contig104:63242..63511	1622927382.2161233-UTR-C-linearis_contig104:63242..63511	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig104 63243..63511 -
1690879667.158339-UTR-C-linearis_contig104:63242..63511	1690879667.158339-UTR-C-linearis_contig104:63242..63511	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig104 63243..63511 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig104:61503..63511-
coding sequence from alignment at C-linearis_contig104:61503..63511-

protein sequence of mRNA_C-linearis_contig104.865.1

>prot_C-linearis_contig104.865.1 ID=prot_C-linearis_contig104.865.1|Name=mRNA_C-linearis_contig104.865.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=188bp
MASPRIASSIAQVSMESMRVENLRGSVQTVFPIHACMPPTANNSETQDYG
TVGSDGPIEGAAKVFQVILRDLSVPGSTSTSNTLHHRINAYFYDKWADKH
HAGIGPGDEIEVSGPAARLVHPDPSAADNGDHPFCLVFHTANDDALLALG
AVAANHPSGGAQGGVRAEEDTVSCRVVRKAEQPGPRGG

mRNA from alignment at C-linearis_contig104:61503..63511-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig104.865.1 ID=mRNA_C-linearis_contig104.865.1|Name=mRNA_C-linearis_contig104.865.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2009bp|location=Sequence derived from alignment at C-linearis_contig104:61503..63511- (Chordaria linearis ClinC8C monoicous)
GGTTGAATAATGAGGCATCATTTGATATTTGCTATTTGCCGTTTGTTTTG
ACTCGGGTCGCAGAGAGCAGACTGACGGCTTCTACGCGACAAATGCATAC
CGTGGCATAGTCCCTGTTCACTGCTGTGTATCACGGATCAAGGAGAGGCA
TAAAGAGAGGGAATACTTGATATACGAACGGAAAAAAGAGAGCGAGCGAG
CGCTGTCTCTCTACAACGCGCTGCGCGAACCGCCAAACCACTACTCTGTA
ACAGGTCGCTCATAGGACCATGGCGTCTCCCAGGATAGCCAGCTCTATAG
CGCAGGTGTCCATGGAGTCGATGCGCGTGGAGAACCTACGAGGAAGCGTG
CAGACGGTGTTTCCGATCCACGCGTGCATGCCGCCAACGGCCAACAACAG
CGAGACGCAAGACTACGGGACGGTGGGCAGCGACGGTCCGATCGAGGGAG
CAGCCAAGGTGATGGTGCGATGATAGTTTGGAAAAACCTGGGTTAGTTCC
GGTCACAGGTTTTGTTAAGCTAAACGGAAGACTGAGTTTGGTGTTTTTGG
CTGTTCGGGAGTTCTTGGGAACATGTTGTTTCGTCTCACGGCTTATGTAT
AAAAATTGCAAAATTGCACAGGTTCCGCCGCGTGTGGTCTCCTACTGTAT
CCTGTTCATAGCAAGACGTAGCCGTGCTGCCGTGTTATTCGCTCATTCCC
GACTATTCCACAGGATTTACCAGGGCACTGAGATGCATGCTCTTCGGCTG
TCGGTTGGGCGTGGTAGAATCAGCACAGGGCATAGAGGTGTAGAGAAAAC
CAGCACCCCGACAAAGCTGTCGGTTTTAAACACGCATGTCGCATCTCAGC
AAGCAGCTTTGCGTTTGGTTATGGGCGCTGGGTAACCAACCATTACAGAT
ACTTTCTCGCCGGTGGTAGTTGAACAACGCCGACCGGTTGTGAATCTATT
GCTGCGGCACCGTTCAGGGACTGGTTCACCGTGAAGAGAGAGTAGAGCAC
GGAAAGTGTGGTGGCAACTCCAGGAGGAAGAACCCCGAAAAATACTGCAA
CCTGCAACGGCAAGGTGGTTCATGAGCTTCTCTGCGCCCGTCCTTGCACA
CTCTGTTCTTTTCCGAGTGTAGGCGTCTACCTCGCCTCACTCTCCTCTTT
TCTCACCTGTGTACAGCAAAACCAACACCGCAAGGCTTTCGCCTTGTTTT
CTCGCCCCGGAACCTACCCCCCCCAGGTGTTCCAAGTTATCTTACGGGAC
CTAAGCGTGCCAGGTAGCACCAGCACCAGCAACACCCTTCACCACCGCAT
CAACGCCTACTTCTATGACAAGTGGGCGGACAAGCACCACGCCGGCATCG
GCCCCGGTGACGAGATAGAGGTGAGCGAAACCGCCGCGGTACAAAGGCGA
GGGGGCGCGCCAGCGCGGCAGTAATTTGTCGTGCTATTTAGCCGCAGGCG
AGCGTACCCATCTAGCCCTTGACTTGGCAACGCCGCCCCCTCCCCCTCCT
GTGGGCTTGCCAGCTGTCAAAGCATCCAACCGCTACAACACCAGTTCAGT
TCTGAAAGAACTTTGCCATAAACGTTGAACACCTGCCATCGTTGTCGACG
TAGCCTCCTCCGCGGAAGCGGGACCCCTGATTACTATTTAGTGTGGCTCT
GCCAAACCCGCGTCCGCTGCAGAGCTTCCCTGGCCCAGATCTCTCGATCG
AATGCGCATGAATGCTGCCCCCTCCCGACCATGTCACCCACCCACACACA
CTCCCGCACGCATTTGACTTTCCTCAAGGTCTCTGGGCCGGCCGCCCGGC
TCGTCCACCCGGACCCTTCCGCGGCCGACAACGGCGACCACCCCTTCTGC
CTGGTCTTCCACACCGCCAACGACGACGCCCTGCTGGCCCTGGGCGCCGT
CGCGGCGAACCACCCCAGCGGCGGCGCACAAGGGGGGGTGCGGGCGGAGG
AAGACACCGTTTCGTGCAGGGTTGTCCGGAAGGCCGAGCAGCCGGGGCCT
AGAGGCGGG

Coding sequence (CDS) from alignment at C-linearis_contig104:61503..63511-

>mRNA_C-linearis_contig104.865.1 ID=mRNA_C-linearis_contig104.865.1|Name=mRNA_C-linearis_contig104.865.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at C-linearis_contig104:61503..63511- (Chordaria linearis ClinC8C monoicous)
ATGGCGTCTCCCAGGATAGCCAGCTCTATAGCGCAGGTGTCCATGGAGTC
GATGCGCGTGGAGAACCTACGAGGAAGCGTGCAGACGGTGTTTCCGATCC
ACGCGTGCATGCCGCCAACGGCCAACAACAGCGAGACGCAAGACTACGGG
ACGGTGGGCAGCGACGGTCCGATCGAGGGAGCAGCCAAGATGGCGTCTCC
CAGGATAGCCAGCTCTATAGCGCAGGTGTCCATGGAGTCGATGCGCGTGG
AGAACCTACGAGGAAGCGTGCAGACGGTGTTTCCGATCCACGCGTGCATG
CCGCCAACGGCCAACAACAGCGAGACGCAAGACTACGGGACGGTGGGCAG
CGACGGTCCGATCGAGGGAGCAGCCAAGGTGTTCCAAGTTATCTTACGGG
ACCTAAGCGTGCCAGGTAGCACCAGCACCAGCAACACCCTTCACCACCGC
ATCAACGCCTACTTCTATGACAAGTGGGCGGACAAGCACCACGCCGGCAT
CGGCCCCGGTGACGAGATAGAGGTGTTCCAAGTTATCTTACGGGACCTAA
GCGTGCCAGGTAGCACCAGCACCAGCAACACCCTTCACCACCGCATCAAC
GCCTACTTCTATGACAAGTGGGCGGACAAGCACCACGCCGGCATCGGCCC
CGGTGACGAGATAGAGGTCTCTGGGCCGGCCGCCCGGCTCGTCCACCCGG
ACCCTTCCGCGGCCGACAACGGCGACCACCCCTTCTGCCTGGTCTTCCAC
ACCGCCAACGACGACGCCCTGCTGGCCCTGGGCGCCGTCGCGGCGAACCA
CCCCAGCGGCGGCGCACAAGGGGGGGTGCGGGCGGAGGAAGACACCGTTT
CGTGCAGGGTTGTCCGGAAGGCCGAGCAGCCGGGGCCTAGAGGCGGGGTC
TCTGGGCCGGCCGCCCGGCTCGTCCACCCGGACCCTTCCGCGGCCGACAA
CGGCGACCACCCCTTCTGCCTGGTCTTCCACACCGCCAACGACGACGCCC
TGCTGGCCCTGGGCGCCGTCGCGGCGAACCACCCCAGCGGCGGCGCACAA
GGGGGGGTGCGGGCGGAGGAAGACACCGTTTCGTGCAGGGTTGTCCGGAA
GGCCGAGCAGCCGGGGCCTAGAGGCGGG