mRNA_C-linearis_contig103.858.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	66.6
Seed ortholog evalue	1.9e-08
Seed eggNOG ortholog	67593.Physo130249
Hectar predicted targeting category	other localisation
EggNOG free text desc.	A Receptor for Ubiquitination Targets
EggNOG OGs	2CDWZ@1,2S60F@2759,3QFI0@4776
Ec32 ortholog description	F-box domain
Ec32 ortholog	Ec-05_000820.1
COG Functional cat.	S
Best tax level	Peronosporales
Best eggNOG OG	NA\|NA\|NA
Exons	6
Model size	2150
Cds size	765
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig103.858.1	prot_C-linearis_contig103.858.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig103 536588..539453 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927380.3445566-UTR-C-linearis_contig103:535451..536587	1622927380.3445566-UTR-C-linearis_contig103:535451..536587	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig103 535452..536587 -
1690879666.1930327-UTR-C-linearis_contig103:535451..536587	1690879666.1930327-UTR-C-linearis_contig103:535451..536587	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig103 535452..536587 -
1622927380.4075227-UTR-C-linearis_contig103:539453..539550	1622927380.4075227-UTR-C-linearis_contig103:539453..539550	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig103 539454..539550 -
1690879666.2671397-UTR-C-linearis_contig103:539453..539550	1690879666.2671397-UTR-C-linearis_contig103:539453..539550	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig103 539454..539550 -
1622927380.4224281-UTR-C-linearis_contig103:540692..540844	1622927380.4224281-UTR-C-linearis_contig103:540692..540844	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig103 540693..540844 -
1690879666.2751358-UTR-C-linearis_contig103:540692..540844	1690879666.2751358-UTR-C-linearis_contig103:540692..540844	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig103 540693..540844 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927380.354807-CDS-C-linearis_contig103:536587..536682	1622927380.354807-CDS-C-linearis_contig103:536587..536682	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig103 536588..536682 -
1690879666.2059689-CDS-C-linearis_contig103:536587..536682	1690879666.2059689-CDS-C-linearis_contig103:536587..536682	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig103 536588..536682 -
1622927380.3638709-CDS-C-linearis_contig103:537338..537460	1622927380.3638709-CDS-C-linearis_contig103:537338..537460	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig103 537339..537460 -
1690879666.2163594-CDS-C-linearis_contig103:537338..537460	1690879666.2163594-CDS-C-linearis_contig103:537338..537460	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig103 537339..537460 -
1622927380.3740659-CDS-C-linearis_contig103:538012..538113	1622927380.3740659-CDS-C-linearis_contig103:538012..538113	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig103 538013..538113 -
1690879666.2271295-CDS-C-linearis_contig103:538012..538113	1690879666.2271295-CDS-C-linearis_contig103:538012..538113	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig103 538013..538113 -
1622927380.383411-CDS-C-linearis_contig103:538667..538924	1622927380.383411-CDS-C-linearis_contig103:538667..538924	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig103 538668..538924 -
1690879666.2419176-CDS-C-linearis_contig103:538667..538924	1690879666.2419176-CDS-C-linearis_contig103:538667..538924	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig103 538668..538924 -
1622927380.3953993-CDS-C-linearis_contig103:539263..539453	1622927380.3953993-CDS-C-linearis_contig103:539263..539453	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig103 539264..539453 -
1690879666.2537756-CDS-C-linearis_contig103:539263..539453	1690879666.2537756-CDS-C-linearis_contig103:539263..539453	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig103 539264..539453 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig103:535452..540844-
coding sequence from alignment at C-linearis_contig103:535452..540844-

protein sequence of mRNA_C-linearis_contig103.858.1

>prot_C-linearis_contig103.858.1 ID=prot_C-linearis_contig103.858.1|Name=mRNA_C-linearis_contig103.858.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=255bp
MTSPQCSPAGKEEDPGNTKEKRSHAAPRRSSRESFDAAVFVADAAGMPGS
PVISHLAKSGRFSARAHRGSSIVLALPDAADPGCRALVPYTASPPARGPA
VSLPAPPPLLVLPVSPSSSCRASPGEAEAGEAVVHRLDIPLEVFPVVFQY
MDAPTLCSVSSVSREWRKQGNDDQYWRRLCRARFNVTPDSFAPPPDPIKR
LYQLQHGSFKAMCRGERRISTLRGCRHGFHTAPPSISRNTSAQLLGLMMM
SNAM*

mRNA from alignment at C-linearis_contig103:535452..540844-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig103.858.1 ID=mRNA_C-linearis_contig103.858.1|Name=mRNA_C-linearis_contig103.858.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5393bp|location=Sequence derived from alignment at C-linearis_contig103:535452..540844- (Chordaria linearis ClinC8C monoicous)
TAGACAACCGACACGTGCGCTGAGATCTCAGTTTGTATGATCACGAGAGA
GGCGGACGCTTGGTGGAGCGGCAGCGGCAGGCAGGAGGCTTGAGCGCGGC
GTCGGTGTTCAAGGCTCTGTGCGTGCGTTCGAGCTGCCTGTTCTGCACTC
AGGTACGTGCGTGATGCGTTGTCCGGGCGTGTTGGTTGAACTGCTGTCTG
TCTACAGGAGCAGTAATTCAGTAATTCGCTGGACCCAACCACGGGCGCAC
GCAAACGCGGAGGTGCATCTTCAACAAGAGCAGCCGGCGACTCGTGCTCA
CCGAAGGCTGTTGTGTGGCACTCGTGAAGCTCTCTTGTTGGTCGACTTAT
ATACGTTCGAATCGATTGCTGTTGGTATGCAACGCATCTCACCCTTAGTA
CGTCATGCGAAGGGATTATGCCAGAGCGACGTCAAAGAAGCAGACGCGCC
GCAAGAGATGGTCTACTTCTGGGCAAGCCATATTGTTATTGTTGTCTACC
CGTGCTGCGTTCCTCTGCGCTTGATCGCAATGAGTGCGTGTGTCTGTAAA
AGTTCAGACTAAATCGACCGGGGGCGAAAGCGGCGCGACTTGAACGTCAT
ACGGGATGAACCGGCACTTGTGCCGTTTGGTTCCCTCTCCCCTCTCCTCG
TTGGAGGATCACACGCATGCGTCGGTGTGTGCTTGGAGGCACACCACCTA
CTGCAGCACCAGGCACACACTACCTACTGCAGCACTATATATGCTGGATT
GCACAGGTCGCAGAACGTGTTCTGGACTGTGCCTTCTAACTGTTCGAATC
GAAGTTGCAGCTTGGCCAGTTTTTCCTCCTGTGCTCTCATCAGACGCATC
GCGCCACCAGTTTACTACTGTACTCGACTTGCGCCGAGTGCGCGCGGCAA
CCTGATATTTTGCGTGCAGCAGAGCGATCCGCATGGCAATGATCCCGGGG
CATGGTCTATTGAACTGGTGGACATGAATGGGTTAGAGGTTGCAAAGTAT
TTGCGCTTCTAATTTGAGTATTCCATGAGATAAACCCAAAGACGGGAAGC
ACGCGTGCACCATACACCGATGGGTATTCATGGAATGGTTGTGTTTTTTC
ATGCCACCTTGCATTCCAGTCCCTTCGTCTTTACCAGCAAACAGGCACGG
GACTCGATCGATCCCCGACGCCGCTTGAGGGGGAAAATCGCGTGTGGGCA
ATGGTGAGAGATTACTGAAAACAAGAAAACCCACGAGCAACCCATGCCGC
CCCCGGGCGTTTTATTCTTTTCTCTCGTCCTTTCCTCTCCGAAGCTCTCC
CTGGACAGCAAAGCGCGGCACTACAGGCATCCCAACACAACACAAGCCTG
GAGCTACCGGCACTTTGCCCTGCGAGAACGACAGGTTAAGTATGACGTCA
CCGCAATGTTCGCCGGCCGGTAAGGAGGAAGACCCCGGAAATACGAAGGA
GAAGAGGTCGCACGCTGCCCCGCGCCGGTCTTCGAGAGAGTCTTTCGATG
CCGCCGTTTTCGTTGCGGATGCGGCGGGGATGCCCGGCTCGCCAGTGATC
TCGCACCTCGCCAAGAGTGGTCGGTTTTCTGGTGAGTTTTTGCTCCACTG
GGCGAGACCTAGACAGATGCGTGGGATGCATCCAACGGCGGCGTCCGTCC
GTTTTTGGGTGGGCGAGACGTTTTTATATCAGGTACTCTGTCTAAACCAA
TTTTCTATATTTCATGGCCAAAAGGTGGGCTCTTCAACTGGTACGCATTA
TCGCCGCGCCACTACTGCTGTATACCTTGTGCAAGGGGCAGTTTGTTTCG
ACTTTCAGGCCCTGAAATCAATGTGAAAATAAATACCACCCATCACTATA
CACCCTTTTTGTTTGTTTTTTTCAATTCTCGCAAATCTTGCCGCTTCATT
TCTCTGCGGATGCTCGAAAGCAAGAGCACACCGCGGCAGCAGCATCGTGC
TAGCCCTCCCGGACGCGGCCGACCCCGGCTGCCGAGCCCTGGTGCCCTAC
ACCGCGAGCCCGCCGGCGAGGGGGCCCGCAGTATCCCTCCCCGCACCCCC
TCCCCTTCTGGTGTTGCCGGTTTCTCCATCGTCGTCATGTCGGGCTTCTC
CGGGGGAAGCTGAGGCCGGGGAGGCTGTGGTGCATCGCCTGGACATCCCC
CTGGAGGTCTTCCCCGTCGTCTTCCAGGTGCGTGGGTTTGTGTCTGTCGT
GTGCCTGGCACTTTTGTTCTTGGGTGTTTGGAATGGTGTCTCTCGCAGCT
GTTTTTAAAAGGGGAATCGGTGCGTCGGACGTTGAATCCAACCCTAGTCT
TGTGGGAACCTACTGCTGTAGTCGTCTTGTTGTTGAATCTTGTTTGACGT
GATGTGATGTCTCTCCCGCAATTCGTGGGAGGGGGGGGGGTCGGCGGACG
CGTCTTCCGGTTGTTTTCGGGTGTCCGAGTCAAACACCTGCTTTTTGATA
TGGTGCAGCTTTATCAAGCGACGCCCTCGGCCCCCGCGCGGTAAATCCCA
AGCGAGTGATGCCTTTGGGTGGGTCTTGTGGCTGCTGTACGTTTACGTTG
ATTTTCCCTAACTCGGCGGTAACACACTTGGATACGCGCCGGAGATTGGC
ATAGTTCGATATATTGAGGTCATCCCATTCCTCTCCCCTCCTATGTACGC
GCCTCTGTCGTGTGAACCTTCGCTGCACTTTTTTGGCTTCTCCGGTGGTT
CTTGGTGACCAACGAAACGGTTGCCGAACAGTACATGGACGCTCCGACGT
TGTGCAGTGTCTCGAGCGTTTCGAGGGAGTGGAGAAAGCAGGGGAACGAC
GACCAGTACTGGAGACGGCTCTGCCGCGCCAGGTTTGCGTTTTGTCACGA
AATCCGCTCGTTGTGGGTGTGTACGCCGCGATAGATTGTGCTTTTGTGGA
GGGGGTGCGAAATGTGGAGTTCGGAAGCCGCGATCTAGAGGGGTCATCAT
GGAATACGAACGCGTACAGCAGTATTGGAGATGAAGCACTTGCGAAAGTA
GCACGGGTACTTCAGACCTGGGTTGATGTCTGAGCACAAAGCTTATTTTC
CTAGACCACTACTGCAGTGGACACGATAAACGAACTCAGGGTTTGAGTAC
CCCGGAAACACGGCGTGAAAGGCTGAACAGGTAGCTCCGGGGATTCTACT
CGTGGAGAGTTGAGGGGCGGCGTCTCCACGGATGGTGATTCGCGTTGCCC
GTTCTTACCTCACAAATCGTTCGATCGATGCACAACCTAACGGCGCACTT
TCTTGCTGTTGTCTTCGTGCCTCCGTGTGCGCGATCGAAATGGATGGTAT
GCCATCATTGACGGCAACATGCACACCCAATGTGATATCGTGTGGTGGAA
ATTTGGGTATTTTTCTTGTTGGTTATTCGGGAAGGTTTAATGTGACTCCG
GACTCCTTCGCGCCTCCCCCGGACCCCATCAAGCGACTCTATCAGCTCCA
GCACGGATCGTTCAAGGCAATGTGTAGAGGTGAGCGAAGGATATCCACCC
TCAGAGGTTTTGTTTTTGGCTGTGACGGAGGTGGGTACGCTGGTCTGGAG
AAACACACCCTTCCCGAATCTGGCCTGCTCCCGTGTGGCCGTATCTAGCT
ACAAATGCGAGAGAGGCAGACACCCCGAAGGGCAACTGATGAGTATCCAG
GGGTCCGGATGAAGGCATACTTGGGGGAAGTTCTTCCGACAAAACAACGT
CCTGGTGCATGATGACCTCGGCAACAGTGCTAGCATTGAAACGACGCCTC
AAAGTCACGCGTACCACTAGTTATTTTTTGCGGATCCTGCCGTTGCTGTG
ATGGACTACAAGAAGTTGCCGGCGAGGCTTCACCCCCGGCCCCCACCTGG
ATCCCTCCGCCCCCAAACACCAAATTATTGGATATGGGACTCGTGGTCGG
TGTACCTCTCTCGATCCTTTCCGACGAGAGTTTTTTGTGCCTTGTTGTGG
CGCGGCACTCTTGTGATCGCGGGCCGTGATTTGCCTGGGTTTGGCGCGGG
GCATTTTCGCATTATTTTCGGAGTATCGAAGTATTGTGGAAGAATCAGCA
ACAAACAGAAGCTGAGCGTTATTTTTGGTTCTGTTCCGTTCGTTCCGTTC
CGGTTTCTTGTTTTTTTTGTTTCTTCGCTAATTTTGTCATGAAAATTCGA
CACCAACGAAAGGATGCCGCCACGGCTTCCACACGGCGCCCCCGTCCATC
TCCCGGAACACGTCGGCGCAGCTACTGGGGCTGATGATGATGTCGAACGC
CATGTAAACAAGACCGACAGCACAGCACAATCAAGCGAGACGCACGAAGT
ACCTTTTTTCCCCCCCTTTTTTGTCGTTTTTCCAAGTAGAAGGCGGGCGA
TGCTAGGTACCGATTGTGTTGATAGTGCACAGCTGGCGGGGCCACTATAT
ACGGCGTGTTTGAGTTTATCCTACGTACATAGCTGGGGCCTGTATTCTCG
GCGATGTTCAGGTCAGAAGTTTTGGTTTTGGCCCCCAGCATTTCGCCCGT
CTGCCTTGTGTCTACGCTGTAAGTTGCTGGCGTAATGCTTAGCACTGTTT
TGTTTTTTTGTCGAGTTGACCTCAATGTAAAAAATGTGATGGTAGGGAAA
TGAGTAGACACGGCCCCGGCAACGAGGTTGTGTTCCAACTTTTTCGGTCT
GTATTTGGTGAGATATGCGGTTCCCGCAGGGCTGAAAGGGGAACGGGTCG
TGCCCCTGTTGCGAACGGGCGGCATTTGTTTTTTTATACATCAAAACGAC
ATCAAAGACATTTTTGTCTCAACGTTAGGCATCTACTATTTGCGCCATGC
TTAAAAAAACGATTTTGCAGCGGCTCGTGAGCAATTTACACATTTACCGA
GACAAATGTGCATGTACAAAATGCTGGTGTGAGCATGGAAAATGCTCCAT
TGATGATACACTCGGTCTTATTGGAAGAGGATCGAGTGTTGTAGAGATAG
GGCGATGCCGGGCAAAGGTTAGGTTTGGGTAGCCGTAGTCGTATCGCAGT
GCCTTCGTCGGACGCTTTGTTTTCGCACGTTTCCGCTCAACGGGAGACAG
GACACCAGACCCAACGACAGGCACCTATTGTCCTGCCTTAGCCAATACGT
AAACTTCGTACGTAGTTACACCGGTTGTGTGCTTCTTGTGTGCGCATCAT
CTCTGAACTTTGTTGGTGGGGAGCAATCGACGGGTTCGCCAGCGTTTAAG
GGTACCACGGTCTAGCCGTAGAGGACAGAGTCTTCGCGTTCCGAATCCAG
AGGTAGCTAGTTTCAGGTTTTTTTCTTTTTTGGTGTAAATTTCACGTACT
AGGTAGATGGCGATTAGCACTGAATTGGGTACCACATGGTATATGCGTAA
ATATGGACGAATGTAGATGTTAAGTAGATGGAGGTTTCCCCCC

Coding sequence (CDS) from alignment at C-linearis_contig103:535452..540844-

>mRNA_C-linearis_contig103.858.1 ID=mRNA_C-linearis_contig103.858.1|Name=mRNA_C-linearis_contig103.858.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at C-linearis_contig103:535452..540844- (Chordaria linearis ClinC8C monoicous)
ATGACGTCACCGCAATGTTCGCCGGCCGGTAAGGAGGAAGACCCCGGAAA
TACGAAGGAGAAGAGGTCGCACGCTGCCCCGCGCCGGTCTTCGAGAGAGT
CTTTCGATGCCGCCGTTTTCGTTGCGGATGCGGCGGGGATGCCCGGCTCG
CCAGTGATCTCGCACCTCGCCAAGAGTGGTCGGTTTTCTGATGACGTCAC
CGCAATGTTCGCCGGCCGGTAAGGAGGAAGACCCCGGAAATACGAAGGAG
AAGAGGTCGCACGCTGCCCCGCGCCGGTCTTCGAGAGAGTCTTTCGATGC
CGCCGTTTTCGTTGCGGATGCGGCGGGGATGCCCGGCTCGCCAGTGATCT
CGCACCTCGCCAAGAGTGGTCGGTTTTCTGCAAGAGCACACCGCGGCAGC
AGCATCGTGCTAGCCCTCCCGGACGCGGCCGACCCCGGCTGCCGAGCCCT
GGTGCCCTACACCGCGAGCCCGCCGGCGAGGGGGCCCGCAGTATCCCTCC
CCGCACCCCCTCCCCTTCTGGTGTTGCCGGTTTCTCCATCGTCGTCATGT
CGGGCTTCTCCGGGGGAAGCTGAGGCCGGGGAGGCTGTGGTGCATCGCCT
GGACATCCCCCTGGAGGTCTTCCCCGTCGTCTTCCAGCAAGAGCACACCG
CGGCAGCAGCATCGTGCTAGCCCTCCCGGACGCGGCCGACCCCGGCTGCC
GAGCCCTGGTGCCCTACACCGCGAGCCCGCCGGCGAGGGGGCCCGCAGTA
TCCCTCCCCGCACCCCCTCCCCTTCTGGTGTTGCCGGTTTCTCCATCGTC
GTCATGTCGGGCTTCTCCGGGGGAAGCTGAGGCCGGGGAGGCTGTGGTGC
ATCGCCTGGACATCCCCCTGGAGGTCTTCCCCGTCGTCTTCCAGTACATG
GACGCTCCGACGTTGTGCAGTGTCTCGAGCGTTTCGAGGGAGTGGAGAAA
GCAGGGGAACGACGACCAGTACTGGAGACGGCTCTGCCGCGCCAGTACAT
GGACGCTCCGACGTTGTGCAGTGTCTCGAGCGTTTCGAGGGAGTGGAGAA
AGCAGGGGAACGACGACCAGTACTGGAGACGGCTCTGCCGCGCCAGGTTT
AATGTGACTCCGGACTCCTTCGCGCCTCCCCCGGACCCCATCAAGCGACT
CTATCAGCTCCAGCACGGATCGTTCAAGGCAATGTGTAGAGGTGAGCGAA
GGATATCCACCCTCAGAGGTTTAATGTGACTCCGGACTCCTTCGCGCCTC
CCCCGGACCCCATCAAGCGACTCTATCAGCTCCAGCACGGATCGTTCAAG
GCAATGTGTAGAGGTGAGCGAAGGATATCCACCCTCAGAGGATGCCGCCA
CGGCTTCCACACGGCGCCCCCGTCCATCTCCCGGAACACGTCGGCGCAGC
TACTGGGGCTGATGATGATGTCGAACGCCATGTAAGATGCCGCCACGGCT
TCCACACGGCGCCCCCGTCCATCTCCCGGAACACGTCGGCGCAGCTACTG
GGGCTGATGATGATGTCGAACGCCATGTAA

mRNA_C-linearis_contig103.858.1 (mRNA) Chordaria linearis ClinC8C monoicous

ZOOM

x 1

POSITION

0