mRNA_C-linearis_contig103.850.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_C-linearis_contig103.850.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE) HSP 1 Score: 570 bits (1470), Expect = 1.190e-174 Identity = 375/808 (46.41%), Postives = 442/808 (54.70%), Query Frame = 3 Query: 192 GALVLVEICGLGVEYRDTIGGEDSSGNGGGVGVGTKQSYPAFSGGSDRAPAGPETDA-KSGQGEPRAPGTRTPPSVPLPSAEDACGGGSGARYFCLGAASFRVRDMHQRVRGDPGFSYLLSTTDPSRPPSSPTLLPLAAQYTVRIT-HALAKTGGXXXXXXXXXXXXXXXXXXXXRTTVTLGGVWANWNPETVAALSIFAYGMYGNSATVGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAGEVSPPSEAGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPAEAGERGGVVVVEVKRLSLWLNKEVHGRRLVLLEAGESTVEIVKYQHPEGSVSNYSLGFSSPALTDLGTRDSRWRSLVSPSLNSGLPAQQVRLNVVQDSRRGVEFPLTVRLVLQSCAVNYLNQTWLEALDYVMNGVLGDGPWCPWLL--DTEGGCSVDGKAFQPPPPVLRKKRLLIEAVDAEVKLPAGHVGAGWVAIEAKHLTA-----------------NNSYEVRRMGDAPAAPLELCQVWSVKLSGVDIHSSRCPRHTQAATSAAPRSSRSSTTSTSPGVPRSAVPQAGSRLLREGGASPGDVTVEAWWPVVPRVGDPKFDGVVSNYMVVGRAPGLDLTLHELDFSVLWQ---VLGDNVSGPVPVTADSLFAEASFSSMVDHPEGEKKKATTNRNNAEERVDT---GAAETI--AIKGIAPPAGGKGGRR--QLAVFPYEHPSPIATTFDVTFHLPDVGLVAHA 2522
GALVL+EICGLGV+YRD +GG D G RA A + DA K G P PPS P DA FCL +SFRV+DMHQRV GD GFSYLLS+ DPS S P LLP + +RIT H LA+ RT V LGGVW NWNPETV AL++F YGMYGNS G A +A P EA AE G+RGGV++ +VKR+SLWLNKEVHGRRL+LLEA ES+ EI KY H +GSVSNYS+ S +LT+LGT+ SRWRSLV PSL+S LP Q+VRL+++QDSR+GVEFP++V LVLQSC VNYLNQTWLE LDY+MNGVLGDGPWCPWLL +E SV + VL+KK L I+A+DAEV+LPAGH G+ WV +AK LTA +NSY RRMGD +A E CQVWS+ L GV I SSR R + AA + AP SSR ST VP P+AGS+LLR+ G S G+VTV+AWWPVVPRVG + DGV SNY+VVGRAPGLDL LHE DFSVLWQ VL +N+SGPVP ADSLFA + + + + + + N A + VDT G ++T A G A G+ GRR QLAVFPYEHPS IATTFD+TFHLPDV LVAHA
Sbjct: 636 GALVLLEICGLGVDYRDAVGGGDRCSGG-------------------RAIA--DADATKQDDGNPAV----EPPSKGDPPGADANVDDDSPCMFCLSVSSFRVKDMHQRVTGDAGFSYLLSSQDPSSSASLPLLLP--EEEALRITYHTLAEKRAGDGGSGS-------------RTVVVLGGVWGNWNPETVGALAVFTYGMYGNSGGGGTAPETGDGGGEGGRPNAEEGKVENNSGRGVPSPRSEGLPSSARGSIPEQAEVEAGKRAERTGAAEPAS-------------------------------------------------------------AETGKRGGVIIAKVKRVSLWLNKEVHGRRLLLLEARESSAEIFKYHHSDGSVSNYSIALGSASLTNLGTKHSRWRSLVCPSLDSTLPPQEVRLDIIQDSRQGVEFPISVNLVLQSCTVNYLNQTWLETLDYLMNGVLGDGPWCPWLLIPQSEDDRSVHERVLPXXXXVLKKKSLRIKALDAEVRLPAGHAGSSWVTFDAKTLTATNRVAHHAPNDARLAGRSNSYGTRRMGDISSAKPETCQVWSIALDGVGIRSSRLYRPSPAA-AVAPSSSRGSTV-----VP----PRAGSKLLRDDGVSLGEVTVDAWWPVVPRVGGAESDGVTSNYVVVGRAPGLDLGLHEDDFSVLWQGCEVLAENISGPVPEAADSLFASSGLAVGPWRAKADDNELGISTNEATDLVDTAGEGKSDTANNARGGHTSAAVGRTGRRRRQLAVFPYEHPSDIATTFDITFHLPDVALVAHA 1332
BLAST of mRNA_C-linearis_contig103.850.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI) HSP 1 Score: 541 bits (1393), Expect = 2.130e-164 Identity = 369/798 (46.24%), Postives = 423/798 (53.01%), Query Frame = 3 Query: 171 TGAAAVV--GALVLVEICGLGVEYRDTIGGEDSSGNGGGVGVGTKQSYPAFSGGSDRAPAGPETDAKSGQGEPRAPGTRTPPSVPLPSAEDACGGGSGARYFCLGAASFRVRDMHQRVRGDPGFSYLLSTTDPSRPPSSPTLLPLAAQYTVRIT-HALA--KTGGXXXXXXXXXXXXXXXXXXXXRTTVTLGGVWANWNPETVAALSIFAYGMYGNSATVGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAGEVSPPSEAGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPAEAGERGGVVVVEVKRLSLWLNKEVHGRRLVLLEAGESTVEIVKYQHPEGSVSNYSLGFSSPALTDLGTRDSRWRSLVSPSLNSGLPAQQVRLNVVQDSRRGVEFPLTVRLVLQSCAVNYLNQTWLEALDYVMNGVLGDGPWCPWLL--DTEGGCSVDGKAFQPPPPVLRKKRLLIEAVDAEVKLPAGHVGAGWVAIEAKHLTANNSYEVRRMGDAPAAPLELCQVWSVKLSGVDIHSSRCPRHTQAATSAAPRSSRSSTTSTSPGVPRSAVPQAGSRLLREGGASPGDVTVEAWWPVVPRVGDPKFDGVVSNYMVVGRAPGLDLTLHELDFSVLWQVLGDNVSGPVPVTADSLFAEAS-----FSSMVDHPE--GEKKKATTNRNNAEERVDTGAAETIAIKGIAPPAGGKGGRRQLAVFPYEHPSPIATTFDVTFHLPDVGLVAHA 2522
GA+ V GALVL+EICGLGV+YRD +GG D G+GG V DA + + E R P PPS P DA G G FCL +SFRV+DMHQR+ GD GFSYLLS+ DPS P LLP + +RIT H L +TGG RT V LGGVW NWNPETV ALS+F YGMYG+S G A XXXXXX +A S P +AG AE G RGG ++V+ EI K H EGSVSNYS+ +LTDLGT+ SRWRSLV PSL+S LP Q+VRL++VQDSR+GVEFP++V LVLQSC VNYLNQTWLE LDY+MNGVLGDGPWCPWLL E SVD + PPPP L KK L I+A DAEV+LPAGH GA WV +AK LTA NSY RRMGD P+A E CQVWS+ L G+ I SSRC R + AA + AP S ST VP P+AGS+LLRE G S G+VTVEAWWP+VPRVG + DGV SNY+VVGRAPGLDL LHE DFSVLWQVL +N+ GPVP DSLFA + +S+ VD E +AT N A E A A + RRQLAVFPYEHPS IATTFDVTFHLPDV LVAHA
Sbjct: 1350 VGASETVAEGALVLLEICGLGVDYRDAVGG-DGHGSGGRAVV----------------------DADATKQEDRNPAVE-PPSKGDPPGADADGNGDSPCKFCLSVSSFRVKDMHQRLTGDAGFSYLLSSQDPSSSAPLPLLLP--EEEALRITYHTLGEKRTGGDRSGS---------------RTVVVLGGVWGNWNPETVGALSVFTYGMYGSSGGGGTAPEIGDXXXXXXRPNAEQGKVDERSGRGVPSPRSEDLPSSASGRSIPEQAGVQAETQAERTGAAEPVS------------------------------------------------------------AEKGRRGGAIIVKA--------------------------EIFKCHHSEGSVSNYSIALGFASLTDLGTKHSRWRSLVCPSLDSTLPPQEVRLDIVQDSRQGVEFPISVNLVLQSCTVNYLNQTWLETLDYLMNGVLGDGPWCPWLLIPQPEDEHSVDERVLPPPPPALNKKSLRIKAFDAEVRLPAGHAGASWVTFDAKTLTATNSYGTRRMGDVPSAKPETCQVWSINLDGLGIRSSRCYRPSPAA-AVAPSPSLGSTV-----VP----PRAGSKLLREDGVSLGEVTVEAWWPMVPRVGGAESDGVTSNYVVVGRAPGLDLGLHEDDFSVLWQVLAENICGPVPEVVDSLFASSGLAVGPWSAKVDDGEHGSSTNEATDLVNTAWEGKPDKADNARGEHTSAAVSRTGRRRRQLAVFPYEHPSDIATTFDVTFHLPDVALVAHA 2010 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.850.1 >prot_C-linearis_contig103.850.1 ID=prot_C-linearis_contig103.850.1|Name=mRNA_C-linearis_contig103.850.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=685bp MHQRVRGDPGFSYLLSTTDPSRPPSSPTLLPLAAQYTVRITHALAKTGGGback to top mRNA from alignment at C-linearis_contig103:471143..477035- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.850.1 ID=mRNA_C-linearis_contig103.850.1|Name=mRNA_C-linearis_contig103.850.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5893bp|location=Sequence derived from alignment at C-linearis_contig103:471143..477035- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:471143..477035- >mRNA_C-linearis_contig103.850.1 ID=mRNA_C-linearis_contig103.850.1|Name=mRNA_C-linearis_contig103.850.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4110bp|location=Sequence derived from alignment at C-linearis_contig103:471143..477035- (Chordaria linearis ClinC8C monoicous)back to top |