mRNA_C-linearis_contig103.847.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig103.847.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE) HSP 1 Score: 1129 bits (2919), Expect = 0.000e+0 Identity = 789/1673 (47.16%), Postives = 940/1673 (56.19%), Query Frame = 1 Query: 52 ANSGERRCSTVAVDLERPIAANWNPRTLVALWAVRAALSRAATGDG------GAYASEESGCCGSEEGGSRRETAAQAPAGVRSIGAASVPACSTEVRVAARRGLEMTLNKEWEGRQLLAMSAASLDLAVEATSGGDATKNNSADTQSAVVWTGRVEELKATDPRGSNLLYSTLVG-PLPXXXXXXXXXXXXXXXXXGRQRSAAVAPVALSFRYAKEK------GGGVGNPTGVSGVDLPAVSVP--AAAAGSGVVAGGCEKCGPWESSALSLSFTELQVVYFQPIWLEVIDFAWDGVLGTAVWGGSAESDGAAAAAPXXXXXXXXVPIARGGDAPTVPAAAAGQXXXXXGDGLRSTSRISVTLSAPTIVLPGGSLTDPRHLALRPKSVRFDTWTGGAGDTSAPPRLEQCSPAGPVARHMAVEAIETDIDLGYFRGSSSTAAAGPGRAEQE----LHPLLREPTDVTVTVKTISPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGSPVDELGGPPDSDXXXXXXXXXXXXASLTPENTPAFRGEECGTGGGXXXXXXXXXXXXXXXXXGVDAAAGADAGGPQEKTMQVRVGVPRMLRLSLPTSDARAALSGCVNGNVLAAGFHGEVSENFPLRAVPLDEDEEEGGCDSTTGAVERRGGARGQEEGNVEEEDGIEGEGEXXXXXXGAVVGSPKKRSGGARGGEKEPGSRSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSSALGSRGSGGAEADGSSLECAVCADPFDELLARHECAWCGGTVCRKCMHTQVLAANDRGTSKTTSAETTTVGAADANDGDGSALLPALVCDACAARNFPESSVHPAGEVRYRYGDDGPVTAVDVALEIPGIQITFGERRGTSSTETGSNEDTHDQDHXKAQEQEQEG--------MAVHGGGLELTYKRSARRRGGLEAAIGTVSLVDLSKGAAFSRLISPA-PAAVSGDARPPQVVLSYHFSPNTEAQVQVREVMFRCQQVMVNHLEAIVAPSTIHKLSTLA--SPPXXXXVHGQGAGDGKVSSPACPRGLQGDPRASSPAEGHGAADG-------------AAAAVTAMHDLATLQLAAEG----------TLGGEHGRPPQQPLTLKVTLLDPVLMLPQDDGDPDSKALFLRGLVMANYVRSGGGDIGKD-------GPAAEARETSLEIIRLESQIGRMFGGSGRGQDVTGVSTSLGGLGAGAGAIDPVTLSLHYSEVERPLHPMVKDVKCQVEEVVCQLTYQDMALFNAVLSGWSSAMMPQEDPATATA-----------------------------------HEDTDDALQRPAGLGLLSSPR-AKDADSPATPGTAAAPVSLRGAAALELDDYDDDCXXXXXGDLFEDGQPRVQQTGRFYDVVFETAQLGLVLLRQNGVAVVEKVSTFNGVRGRAGGPFPGDELVEVAGMPTSQLSYNGVVDRICAGPRPVTLRFRRALYRCWWGREYTLDLSNWDGHRLGGVLLVGGGAGDQALVGSTDGYRPQKP-LPGAPSLRPRPGALIASIAGTPVSHLSLSAVTAFLDELTSETXXXXXXXXXASPFYDDGYGRIAGGGSXXXXXXXXXLAGGWTQAMLPKSAAARGRAEGR-----------------RSRPRRQRHQLLP 4728
A+SGE +VAV+L P+ ANWNP TLVALW VR+AL R+A G G +EE+ G + + A Q R GA+ P CSTE++VAAR+GLE+ NK+ EGRQL+ +SAASL L VEA+SGG AT +S VVW GR+++L A DPR SNLLYSTLVG P P +PV+L+FRY+KEK G V +P +P ++P A A G VAG PWESS+LSLSF+ELQVVYFQP+WLEVIDF W+GVLG AVWGGSA S+ A P A G P GLRS S+I VTLSAPT+VLPG SLTDPRHLALRPK RF+TWTGGA D+SAPPRLE+CSP GPVARHMAVEA ETDI LG S + G + L+ LL+E DV V VKT+SP G+ V A + E TP G C + G D AG+ G QEKTM+VRV +PR+L++SL T DARAAL+GC+ N+LAAGFHGEVSENFPL A D+D D GA G E+ + D I+ E E G G R GG G + ++ G S +A+GSRG G L C +C D FDELLARHECAWCGGTVCRKCMHTQVL +D GTS T + D +LP+L+CD CAAR FPE+SV+PAG+VRYRYGDDGPVTAVDVALEI IQ+ F ++S G+ E+ D + E G ++V G GLELTY+RSARR GGLEA++ VSL+DLS G AFSR++SPA P VSG+ RPPQVV+SYHFSP TEAQVQV MVNHLE + PS IHKL LA +PP ++G G + SP P G +P EG G +G AAA MHDLA LQL EG T+ GE G P + PLTLK TLL+PVL+LPQDD DPD ALFL+GL++ANYVRS D G A EAR+TSLEIIRLESQ+GRMFGGSGR G ST GGLG GAGA DPVTLSLHYSEVERPLHPMVKD+KCQVEEV CQLTYQDM+LFNAVLSGWSS ++ Q TA A HED D AL+ LG+ P+ A D+ L GA+AL+L+D E+G ++Q GRFY+VVFETAQLG+VLLRQNGVAVVE+VS++NGV GRA GPFPGDEL EVAGMPTS LSY+GVVDRI A PRP++LRFRRAL+R WWGREYTLDLS+WDGHRL G+LLVGGGAGDQA+VGS DG+RP+K L G P+LRPR GAL+ S+AG PVSHL++SAVT+ L+++ SE P + R GG +AGGWT+ +L + RPRRQ+HQLLP
Sbjct: 2135 ASSGEHCRVSVAVELGGPVTANWNPCTLVALWGVRSALLRSAAGVGRDPDLDDVTPAEEADPGGGDRDPGKATDAGQKMDSRRGTGASPTPTCSTEIQVAARKGLEVMFNKKKEGRQLIGVSAASLALTVEASSGGRATD------KSTVVWDGRLDDLTARDPRASNLLYSTLVGRPSPPRPTAQQPE----------------SPVSLTFRYSKEKEDESAEGPFVADP-------IPPAALPQGATAPAEGRVAG------PWESSSLSLSFSELQVVYFQPLWLEVIDFLWEGVLGAAVWGGSAVSEKEA---------EQGAPAATGRGDP----------------GLRSLSQIQVTLSAPTVVLPG-SLTDPRHLALRPKKFRFNTWTGGADDSSAPPRLEECSPGGPVARHMAVEAGETDIGLGVCYPRSPLPQSPVGAVQHWATGLLYSLLQETIDVKVAVKTVSPPPSSDGATGIVGSDCGDRDPPREVGSRSSSRIGSGGTGV----------TPEVEVRSTRAGAKVIEEETPGDEG--CNSDGTED-----------------DGGAGSIEEGVQEKTMEVRVELPRLLQISL-TPDARAALAGCLGANILAAGFHGEVSENFPLVASKQDDDAATSNFDGA--------GAAGVEQ----DMDEIDPEREARGTTRGG--GEKFHREGG---GTEPRVDKAVGGVGGYPLPYSPRAVRKHQQRYPSPPQSPSGTAVGSRGGDGVSPP---LACPLCTDSFDELLARHECAWCGGTVCRKCMHTQVLIYDDDGTSNAPGGNT--------GESDAPTVLPSLICDNCAARVFPETSVNPAGQVRYRYGDDGPVTAVDVALEIRRIQVDF--LPSSASLPWGAGEEEEDGNEGFPAEHRSRGTGRPTPGGISVLGDGLELTYRRSARRMGGLEASVDAVSLLDLSPGTAFSRILSPAAPIPVSGEMRPPQVVISYHFSPKTEAQVQV----------MVNHLETVAVPSAIHKLRVLAKRTPPPPTPMYGWKPGGERDPSPVGPPNSGG---LGTPGEGVGTTEGSVEETRAATGGLGAAAEAECMHDLAALQLTQEGVTPPPPIISDTIRGEDGAP-KTPLTLKATLLNPVLILPQDDKDPDCNALFLQGLIIANYVRSPRNDTAFQQHSNSARGAAVEARDTSLEIIRLESQLGRMFGGSGR---APGASTP-GGLGGGAGAFDPVTLSLHYSEVERPLHPMVKDLKCQVEEVECQLTYQDMSLFNAVLSGWSSGLLSQTVDETADAVTGDTTAAAVVDAAVSPLAAAATSPFVRNSSSKNGHEDVD-ALR----LGIGMPPQHANDSADAXXXXXXXXXXXLMGASALDLEDE-------------EEGGEQIQD-GRFYEVVFETAQLGIVLLRQNGVAVVEEVSSYNGVGGRAAGPFPGDELTEVAGMPTSCLSYDGVVDRIRASPRPISLRFRRALFRSWWGREYTLDLSSWDGHRLDGILLVGGGAGDQAVVGSVDGFRPRKRRLKGVPTLRPRAGALVVSVAGIPVSHLTVSAVTSLLNDIASE------------PSRRSPHARGVAGGERKM------VAGGWTETVLANXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQRPRRQQHQLLP 3631
BLAST of mRNA_C-linearis_contig103.847.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI) HSP 1 Score: 797 bits (2059), Expect = 1.960e-243 Identity = 580/1161 (49.96%), Postives = 670/1161 (57.71%), Query Frame = 1 Query: 310 CSTEVRVAARRGLEMTLNKEWEGRQLLAMSAASLDLAVEATSGGDATKNNSADTQSAVVWTGRVEELKATDPRGSNLLYSTLVG-PLPXXXXXXXXXXXXXXXXXGRQRSAAVAPVALSFRYAKEKGGGVGNPTGVSGVDLPAVSVPAAAA-GSGVVAGGCEKCGPWESSALSLSFTELQVVYFQPIWLEVIDFAWDGVLGTAVWGGSAESD-----GAAAAAPXXXXXXXXVPIARGGDAPTVPAAAAGQXXXXXGD-GLRSTSRISVTLSAPTIVLPGGSLTDPRHLALRPKSVRFDTWTGGAGDTSAPPRLEQCSPAGPVARHMAVEAIETDIDLG--YFRGS--SSTAAAGPGRAEQELHPLLREPTDVTVTVKTISPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGS-PVDELGGPPDSDXXXXXXXXXXXXASLTPENTPAFRGEECGTGGGXXXXXXXXXXXXXXXXXGVDAAAGADAGGPQEKTMQVRVGVPRMLRLSLPTSDARAALSGCVNGNVLAAGFHGEVSENFPLRAVPLDEDEEEGGCDSTTGAVERRGGARGQEEGNVEEE-DGIEGEGEXXXXXXGAVVGSPKKRSGGARGGEKEPGSRSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSSALGSRGSGGAEADGSSLECAVCADPFDELLARHECAWCGGTVCRKCMHTQVLAANDRGTSKTTSAETTTVGAADANDGDGSALLPALVCDACAARNFPESSVHPAGEVRYRYGDDGPVTAVDVALEIPGIQITFGERRGTSSTETGSNEDTHDQDHXKAQEQEQEG--------MAVHGGGLELTYKRSARRRGGLEAAIGTVSLVDLSKGAAFSRLISPA-PAAVSGDARPPQVVLSYHFSPNTEAQVQVREVMFRCQQVMVNHLEAIVAPSTIHKLSTLA--SPPXXXXVHGQGAGDGKVSSPACPRGLQGDPRASSPAEGHGAAD------------GAAAAVTAMHDLATLQLAAEGTLGGEHGRPPQQPLTLKVTLLDPVLMLPQDDGDPDSKALFLRGLVMANYVRSGGGDIGKD-------GPAAEARETSLEIIRLESQIGRMFGGSGRGQDVTGVSTSLGGLGAGAGAIDPVTLSLHYSEVERPLHPMVKDVKCQ 3660
CSTE+ VAARRGLE+ NKE EGRQL+A+SAASL L VEA+SGG AT +S VVW GR+++L A DPR SNLLYSTLVG P P +PV+L+FRY+KEKG G V+ PA + A A G VAG PWESS+LSLSF+ELQVVYFQP+WLEVIDF W+GVLG AVWGGSA + GA AA P AR + AAA G GD GLRS S+I VTLSAPT+VLPG SLTDPRHLALRPK+ RF TWTGGA D+SAPPRLE+CSP GPVARHMAVEA ETDI LG Y RG S A RA + LL+EP DV V VKT+SP G G+ P ++G A + E T G C + G XXXXXXXXXX G QEKTM+VRV +PR+L++SL T DARAAL+GC+ N+LAAGFHGEVSENFPL A D+D S G + G VE+E D I+ E E G G +KR RGG + R+ G S +A+GSRG G L C +C D FDELLARHECAWCGGTVCRKC+HTQVL +D GTS T +GD +LP+L+CD CAAR FPE+SV PAG+VRYRYGDDGPVTAVDVALEIP IQ+ F ++S G+ E+ D + G M+V G GLELTY+RSARR GGLE ++G V L+DLS G AFSR++SPA P VSG+ RPPQVV+SYHFSP TEAQVQV MVNHLE I PS IHKL LA +PP ++G GD + SP P G +P EG G GAAA MHDLA LQL +G GE G P + PLTLK TLL+PVL+LPQDD DPD ALFL+GL++ANYVRS D G AAEAR+TSLEIIRLESQ+GRMFGGSGR G ST GLGAGAGAIDPVTLSLHYSEVERPLHPMVKD+KCQ
Sbjct: 2906 CSTEIEVAARRGLEVMFNKEKEGRQLIALSAASLALTVEASSGGCATD------KSTVVWDGRLDDLTARDPRASNLLYSTLVGRPSPPRPTAQQPE----------------SPVSLTFRYSKEKGDESGEGPYVAYRIPPAALLQGATAPAEGRVAG------PWESSSLSLSFSELQVVYFQPLWLEVIDFLWEGVLGAAVWGGSAVPEEEAEQGAPAATDGSTPADRRTPGAREQER----AAADG------GDPGLRSLSQIQVTLSAPTVVLPG-SLTDPRHLALRPKTFRFSTWTGGADDSSAPPRLEECSPGGPVARHMAVEAGETDIGLGFCYPRGPRPQSPVGAVQHRATGLFYSLLQEPIDVKVAVKTVSPPPPSDGATGIAGSDCDDRDPPREVGRSSSSSSGGTGTTPAVQVG-------------LTSGGAKVVEEKTSGDEG--CNSDGTXXXXXXXXXXE-----------------GEQEKTMEVRVELPRLLQVSL-TPDARAALAGCLGANILAAGFHGEVSENFPLVASKDDDD----AATSIFGGADAAG---------VEQEMDEIDPEREVR----GTTRGGGEKRHH-ERGGTEPRVDRAGGEVGGYPLPYSPRAVRKHQRRHPSPPQSPSGTAVGSRGGDGVSPP---LACPLCTDSFDELLARHECAWCGGTVCRKCLHTQVLIYDDDGTSNAPGGNT--------GEGDAPIVLPSLICDNCAARVFPETSVSPAGQVRYRYGDDGPVTAVDVALEIPRIQVDF--LPSSASLPWGAGEEEEDSNEGFPAGHRSRGTGHPTPGGMSVLGDGLELTYRRSARRMGGLEGSVGAVLLLDLSPGTAFSRIVSPAAPVPVSGEMRPPQVVISYHFSPKTEAQVQV----------MVNHLETIAVPSAIHKLHVLAKPTPPPPTPMYGWKPGDERDPSPVGPPHSSG---LGTPGEGVGTERNVKETRAATGGLGAAAEAECMHDLAALQLTQQG---GEDGAP-KTPLTLKATLLNPVLILPQDDKDPDCNALFLQGLIIANYVRSPRNDTAFQQHSNSARGAAAEARDTSLEIIRLESQVGRMFGGSGR---APGASTPS-GLGAGAGAIDPVTLSLHYSEVERPLHPMVKDLKCQ 3942
BLAST of mRNA_C-linearis_contig103.847.1 vs. uniprot
Match: D7FHV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV4_ECTSI) HSP 1 Score: 159 bits (402), Expect = 2.970e-41 Identity = 84/140 (60.00%), Postives = 98/140 (70.00%), Query Frame = 1 Query: 3967 EDGQPRVQQTGRFYDVVFETAQLGLVLLRQNGVAVVEKVSTFNGVRGRAGGPFPGDELVEVAGMPTSQLSYNGVVDRICAGPRPVTLRFRRALYRCWWGREYTLDLSNWDGHRLGGVLLVGGGAGDQALVGSTDGYRPQK 4386
E+G ++Q GRFY+VVFETAQLG+VLLRQ VAGMPTS LSY+GVVDRI A P P++LRFRRAL++ WWGREYTLDLS WDGHRL G+LLVGGGAGDQA+VGS DG+RP+K
Sbjct: 42 EEGGEQIQD-GRFYEVVFETAQLGIVLLRQ------------------------------VAGMPTSCLSYDGVVDRIRASPCPISLRFRRALFKSWWGREYTLDLSYWDGHRLDGILLVGGGAGDQAVVGSVDGFRPRK 150
BLAST of mRNA_C-linearis_contig103.847.1 vs. uniprot
Match: A0A836C849_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C849_9STRA) HSP 1 Score: 138 bits (348), Expect = 7.890e-29 Identity = 181/690 (26.23%), Postives = 267/690 (38.70%), Query Frame = 1 Query: 2551 AGEVRYRYGDDGPVTAVDVALEIPGIQITFGERRGTSSTETGSNEDTHDQDHXKAQEQEQEGMAVHGGGLELTYKRSARRRGGLEAAIGTVSLVDLSKGAAFSRLISPAPAAVSGDARP------------PQVVLSYHFSPNTEAQVQVREVMFRCQQVMVNHLEAIVAPSTIHKLSTLASPPXXXXVHGQGAGDGKVSSPACPRGLQGDPRASSPAEGHGAADGAAAAVTAMHDLATLQLAAEGTL----GGEHGRPPQQPLTLKVTLLDPVLMLPQDDGDPDSKALFLRGLVMANYVRSGGGDIGKDGPAAEARETSLEII----------RLESQIGRMFGGSGRGQDVTGVSTSLGGLGAGAGAIDPVTLSLHYSEVERPLHPMVKDVKCQVEEVVCQLTYQDMALFNAVLSGWSSAMMPQEDPATATAHEDTDDALQRPAGLGLLSSPRAKDADSPATPGTAAAPVSLRGAAALELDDYDDDCXXXXXGDLFEDGQPRVQQTGRFYDVVFETAQLGLVLLRQNGVAVVEKVSTFNGVRGRAGGPFPGDELVEVAGMPTSQLSYNGVVDRICAGP---------------RPVTLRFRRALYRCWWGREYTLDLSNWDGHRLGGVLLVGGGAGDQALVGSTDGYRPQKPLPGAPSLR---PRPGALIASIAGTPVSHLSLSAVTA 4488
A +RYR+G DGP + L++P + + T S D + + E +A L+ +R+A R G LE ++ T L D G + P P S D PQ+ S HF+ Q+M+NH+EA++A + ++ + V +PA P G G G A MHDLA LQLA++ G PLT+KVTL +P L+L ++ DP + AL L+GL++ Y RS + +DG A +T L++ RLES I M G G G G G +DPVT+SL S + RPLHP V CQVE V Q +Y D+++ + VL GWS A+A A +Q PA G G A + + L + G G P V++ + A+ GL + + VE + G+R A +V+ + S L Y V+ + + P RP+ L FRRA YR E+ + ++ +G L G+ GG GDQ +V S+ YR + PR GA++ S+ G + L +A A
Sbjct: 2929 AAAIRYRFGSDGPSMPFSLDLQVPSATVQLCAKTAGPLAVTASETGGADPNGTPIAVLDVEKLA-------LSVQRAADRSGSLELSLRTFCLRDPRPGCVHPNIAIPKPELDSQDGEDSGXXXXXXXXXAPQLACSLHFNAQQSR-----------MQIMLNHMEAMIAFGALREMRAALA----------------VPAPAAP--------------GRGGPPGTTMAQPHMHDLAPLQLASDCDFVAGGGXXXXXXXALPLTVKVTLNNPRLLLLGEERDPHTHALVLQGLIIGRYTRSAA--LLEDGEVAVTSKTRLQVXXXXXXXXRVHRLESYIHAMGGD--------------GDTGTGVGILDPVTVSLDSSLMRRPLHPDEHHVTCQVEGVDAQFSYADLSVLSKVLRGWS---------ASAAAAGGATPEVQEPAAGG--------------DGGDAGLYRVIFASEKLGI-------TIARHG-----GLPVVEEVAEW------RAKDGLGPWPNDELVEVEGLEVA-GLRYEAA-------VVDQCAVTLSLLRYEAAVEALRSRPLXXXXXXXXXXXXXXRPLALTFRRATYRGPGFEEFVV--THTEGTGLEGIEACRGGLGDQLVVRSSRAYRSAQXXXXXXXXXXXAPRAGAVVWSVNGEACAELGAAAACA 3503 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.847.1 >prot_C-linearis_contig103.847.1 ID=prot_C-linearis_contig103.847.1|Name=mRNA_C-linearis_contig103.847.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1580bp ADADADADADADAASSSANSGERRCSTVAVDLERPIAANWNPRTLVALWAback to top mRNA from alignment at C-linearis_contig103:455988..467052- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.847.1 ID=mRNA_C-linearis_contig103.847.1|Name=mRNA_C-linearis_contig103.847.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=11065bp|location=Sequence derived from alignment at C-linearis_contig103:455988..467052- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:455988..467052- >mRNA_C-linearis_contig103.847.1 ID=mRNA_C-linearis_contig103.847.1|Name=mRNA_C-linearis_contig103.847.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=9480bp|location=Sequence derived from alignment at C-linearis_contig103:455988..467052- (Chordaria linearis ClinC8C monoicous)back to top |